Wall clock time and date at job start Mon Mar 30 2020 04:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00362 * 2 1 4 4 H 1.09001 * 109.47205 * 328.84238 * 3 2 1 5 5 C 1.52999 * 109.47234 * 208.84022 * 3 2 1 6 6 N 1.46906 * 109.46993 * 64.99984 * 5 3 2 7 7 C 1.46900 * 110.99971 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.46870 * 180.02562 * 7 6 5 9 9 O 1.42893 * 109.47313 * 65.00395 * 8 7 6 10 10 C 1.42903 * 114.00083 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46935 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00324 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99498 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00280 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99813 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46733 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47029 * 119.99637 * 15 13 11 18 18 H 1.48495 * 109.47346 * 240.00324 * 15 13 11 19 19 C 1.52997 * 109.46742 * 88.84013 * 3 2 1 20 20 C 1.52995 * 117.50301 * 253.70496 * 19 3 2 21 21 C 1.52997 * 117.49760 * 185.04599 * 19 3 2 22 22 H 1.09001 * 109.46409 * 304.56403 * 1 2 3 23 23 H 1.08999 * 109.46844 * 64.55798 * 1 2 3 24 24 H 1.08992 * 109.47235 * 184.56228 * 1 2 3 25 25 H 1.09004 * 109.47306 * 305.00737 * 5 3 2 26 26 H 1.08999 * 109.46980 * 184.99999 * 5 3 2 27 27 H 1.00899 * 110.99347 * 56.04788 * 6 5 3 28 28 H 1.09003 * 109.47273 * 300.00734 * 7 6 5 29 29 H 1.09002 * 109.46614 * 60.00157 * 7 6 5 30 30 H 1.09010 * 109.46786 * 185.00250 * 8 7 6 31 31 H 1.09002 * 109.47545 * 304.99527 * 8 7 6 32 32 H 1.09002 * 109.46944 * 299.99477 * 10 9 8 33 33 H 1.08997 * 109.47219 * 59.99850 * 10 9 8 34 34 H 0.97002 * 119.99554 * 179.97438 * 14 13 11 35 35 H 1.09004 * 115.55197 * 39.38275 * 19 3 2 36 36 H 1.09000 * 117.49444 * 0.02562 * 20 19 3 37 37 H 1.09005 * 117.50101 * 145.01850 * 20 19 3 38 38 H 1.09001 * 117.49864 * 214.98205 * 21 19 3 39 39 H 1.09000 * 117.50123 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3548 1.9951 -0.5317 5 6 3.3721 1.2574 -0.6958 6 7 3.1864 0.9146 -2.1122 7 6 4.4758 0.8598 -2.8140 8 6 4.2420 0.5015 -4.2829 9 8 3.5101 1.5513 -4.9186 10 6 3.2377 1.3153 -6.3014 11 6 2.4664 2.4797 -6.8674 12 1 2.2095 3.3162 -6.2343 13 6 2.0879 2.4767 -8.1931 14 7 2.4003 1.4579 -8.9639 15 14 1.1312 3.9197 -8.8945 16 1 0.9071 4.9297 -7.8292 17 1 1.9038 4.5333 -10.0043 18 1 -0.1784 3.4431 -9.4073 19 6 2.1911 1.7831 1.4422 20 6 1.2333 2.8604 1.9550 21 6 2.6924 3.2129 1.6552 22 1 -0.3632 0.5831 0.8463 23 1 -0.3633 0.4415 -0.9280 24 1 -0.3633 -1.0243 0.0817 25 1 3.9976 0.5029 -0.2185 26 1 3.8545 2.2317 -0.6180 27 1 2.5578 1.5633 -2.5617 28 1 4.9656 1.8315 -2.7507 29 1 5.1093 0.1029 -2.3513 30 1 5.2022 0.3736 -4.7829 31 1 3.6739 -0.4267 -4.3446 32 1 4.1772 1.2046 -6.8430 33 1 2.6489 0.4040 -6.4053 34 1 2.1335 1.4557 -9.8965 35 1 2.5203 1.0235 2.1513 36 1 0.4741 3.2285 1.2649 37 1 0.9325 2.8097 3.0015 38 1 3.3510 3.3940 2.5047 39 1 2.8938 3.8131 0.7679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385262509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:55 Heat of formation + Delta-G solvation = -76.368353 kcal Electronic energy + Delta-G solvation = -17483.864586 eV Core-core repulsion = 14620.301607 eV Total energy + Delta-G solvation = -2863.562979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.10178 -37.07755 -36.28540 -35.11342 -32.69275 -30.41400 -27.83766 -26.61619 -25.74315 -23.14368 -22.39482 -22.28548 -21.34136 -20.38566 -17.16387 -16.45133 -15.91187 -15.81244 -15.31724 -15.07822 -14.98617 -14.41818 -14.07933 -13.79586 -13.51711 -13.32666 -12.66859 -12.16088 -11.84924 -11.76615 -11.72224 -11.50982 -11.28638 -11.12997 -10.79044 -10.74479 -10.59754 -10.55013 -10.20740 -9.99131 -9.48906 -9.08109 -8.81241 -8.15342 -8.11791 -6.10239 -4.11966 3.28922 3.35288 3.41255 3.47499 3.76095 4.25991 4.35471 4.61825 4.73353 4.80971 4.97883 5.03469 5.24666 5.26257 5.32258 5.38339 5.41695 5.48130 5.53496 5.63865 5.65033 5.74391 5.78282 5.86143 5.90709 5.96883 6.12586 6.25887 6.39755 7.13854 7.21504 7.29997 7.46182 7.70039 7.79821 8.16620 8.59682 9.01598 9.52901 11.01363 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.004176 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.552513 B = 6702.757297 C = 7043.902893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.124 3.876 4 H 0.061 0.939 5 C 0.065 3.935 6 N -0.681 5.681 7 C 0.067 3.933 8 C 0.062 3.938 9 O -0.400 6.400 10 C 0.197 3.803 11 C -0.514 4.514 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.175 4.175 20 C -0.181 4.181 21 C -0.174 4.174 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.352 0.648 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 0.149 20.248 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.065 3.935 4 H 0.079 0.921 5 C -0.065 4.065 6 N -0.313 5.313 7 C -0.062 4.062 8 C -0.016 4.016 9 O -0.320 6.320 10 C 0.122 3.878 11 C -0.552 4.552 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.734 3.266 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.194 4.194 20 C -0.218 4.218 21 C -0.211 4.211 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.171 0.829 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.325 -0.597 20.256 20.267 hybrid contribution -0.378 1.559 -0.672 1.739 sum -0.703 0.962 19.584 19.620 Atomic orbital electron populations 1.22748 0.81576 1.02358 0.99817 1.87974 1.19138 1.26534 1.94691 1.21628 0.94897 0.85278 0.91673 0.92137 1.21966 0.95303 0.99556 0.89643 1.60389 1.12992 1.56820 1.01127 1.21942 0.90965 0.99916 0.93375 1.22297 0.95587 0.92185 0.91508 1.87773 1.74750 1.42327 1.27185 1.20179 0.95020 0.97056 0.75511 1.21093 1.34841 1.04394 0.94895 0.91623 1.24949 0.96286 0.96676 0.96596 1.69977 1.46711 1.30324 1.06700 0.86298 0.79425 0.81959 0.78900 1.19552 1.20851 1.20827 1.22888 1.05142 0.92587 0.98797 1.23033 0.93316 1.03407 1.02018 1.22923 0.97057 0.97576 1.03513 0.94508 0.93856 0.89974 0.90466 0.94097 0.82895 0.94938 0.90658 0.94176 0.93476 0.97827 0.97586 0.92714 0.87133 0.88800 0.88798 0.88604 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.79 101.05 1.09 1.44 16 2 O -0.37 -4.97 10.30 -35.23 -0.36 -5.33 16 3 C 0.12 1.48 2.47 -26.73 -0.07 1.42 16 4 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 5 C 0.06 0.83 5.30 -3.82 -0.02 0.81 16 6 N -0.68 -10.75 6.45 -113.77 -0.73 -11.49 16 7 C 0.07 1.06 6.11 -3.83 -0.02 1.04 16 8 C 0.06 1.20 6.28 37.16 0.23 1.43 16 9 O -0.40 -9.71 9.84 -35.23 -0.35 -10.06 16 10 C 0.20 5.48 5.69 36.01 0.20 5.68 16 11 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 15 Si 0.91 21.90 29.54 -169.99 -5.02 16.87 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 C -0.18 -1.72 5.36 -90.63 -0.49 -2.20 16 20 C -0.18 -1.54 10.18 -26.70 -0.27 -1.81 16 21 C -0.17 -1.50 9.74 -26.70 -0.26 -1.76 16 22 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.49 7.49 -51.93 -0.39 0.10 16 27 H 0.35 6.06 8.29 -39.29 -0.33 5.73 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -31.52 328.89 -7.77 -39.30 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.98 Total: 0.10 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.02 Total: -7.99 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.00 Total: -37.85 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.71 Total: -15.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.52 -7.77 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385262509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.070 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds