Wall clock time and date at job start Mon Mar 30 2020 04:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00362 * 2 1 4 4 H 1.09001 * 109.47205 * 328.84238 * 3 2 1 5 5 C 1.52999 * 109.47234 * 208.84022 * 3 2 1 6 6 N 1.46906 * 109.46993 * 64.99984 * 5 3 2 7 7 C 1.46900 * 110.99971 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.46870 * 180.02562 * 7 6 5 9 9 O 1.42893 * 109.47313 * 65.00395 * 8 7 6 10 10 C 1.42903 * 114.00083 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46935 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00324 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99498 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00280 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99813 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46733 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47029 * 119.99637 * 15 13 11 18 18 H 1.48495 * 109.47346 * 240.00324 * 15 13 11 19 19 C 1.52997 * 109.46742 * 88.84013 * 3 2 1 20 20 C 1.52995 * 117.50301 * 253.70496 * 19 3 2 21 21 C 1.52997 * 117.49760 * 185.04599 * 19 3 2 22 22 H 1.09001 * 109.46409 * 304.56403 * 1 2 3 23 23 H 1.08999 * 109.46844 * 64.55798 * 1 2 3 24 24 H 1.08992 * 109.47235 * 184.56228 * 1 2 3 25 25 H 1.09004 * 109.47306 * 305.00737 * 5 3 2 26 26 H 1.08999 * 109.46980 * 184.99999 * 5 3 2 27 27 H 1.00899 * 110.99347 * 56.04788 * 6 5 3 28 28 H 1.09003 * 109.47273 * 300.00734 * 7 6 5 29 29 H 1.09002 * 109.46614 * 60.00157 * 7 6 5 30 30 H 1.09010 * 109.46786 * 185.00250 * 8 7 6 31 31 H 1.09002 * 109.47545 * 304.99527 * 8 7 6 32 32 H 1.09002 * 109.46944 * 299.99477 * 10 9 8 33 33 H 1.08997 * 109.47219 * 59.99850 * 10 9 8 34 34 H 0.97002 * 119.99554 * 179.97438 * 14 13 11 35 35 H 1.09004 * 115.55197 * 39.38275 * 19 3 2 36 36 H 1.09000 * 117.49444 * 0.02562 * 20 19 3 37 37 H 1.09005 * 117.50101 * 145.01850 * 20 19 3 38 38 H 1.09001 * 117.49864 * 214.98205 * 21 19 3 39 39 H 1.09000 * 117.50123 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3548 1.9951 -0.5317 5 6 3.3721 1.2574 -0.6958 6 7 3.1864 0.9146 -2.1122 7 6 4.4758 0.8598 -2.8140 8 6 4.2420 0.5015 -4.2829 9 8 3.5101 1.5513 -4.9186 10 6 3.2377 1.3153 -6.3014 11 6 2.4664 2.4797 -6.8674 12 1 2.2095 3.3162 -6.2343 13 6 2.0879 2.4767 -8.1931 14 7 2.4003 1.4579 -8.9639 15 14 1.1312 3.9197 -8.8945 16 1 0.9071 4.9297 -7.8292 17 1 1.9038 4.5333 -10.0043 18 1 -0.1784 3.4431 -9.4073 19 6 2.1911 1.7831 1.4422 20 6 1.2333 2.8604 1.9550 21 6 2.6924 3.2129 1.6552 22 1 -0.3632 0.5831 0.8463 23 1 -0.3633 0.4415 -0.9280 24 1 -0.3633 -1.0243 0.0817 25 1 3.9976 0.5029 -0.2185 26 1 3.8545 2.2317 -0.6180 27 1 2.5578 1.5633 -2.5617 28 1 4.9656 1.8315 -2.7507 29 1 5.1093 0.1029 -2.3513 30 1 5.2022 0.3736 -4.7829 31 1 3.6739 -0.4267 -4.3446 32 1 4.1772 1.2046 -6.8430 33 1 2.6489 0.4040 -6.4053 34 1 2.1335 1.4557 -9.8965 35 1 2.5203 1.0235 2.1513 36 1 0.4741 3.2285 1.2649 37 1 0.9325 2.8097 3.0015 38 1 3.3510 3.3940 2.5047 39 1 2.8938 3.8131 0.7679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385262509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:55 Heat of formation + Delta-G solvation = -98.344148 kcal Electronic energy + Delta-G solvation = -17484.817528 eV Core-core repulsion = 14620.301607 eV Total energy + Delta-G solvation = -2864.515921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00646 -38.80580 -37.10477 -36.50879 -34.86938 -31.70211 -29.53287 -28.20440 -26.75721 -24.54061 -24.05132 -23.15726 -22.66494 -21.27211 -18.65540 -18.08646 -17.49468 -17.04936 -16.60798 -16.50893 -16.30453 -15.83126 -15.27067 -15.11156 -14.98902 -14.43362 -14.14594 -13.57816 -13.34955 -13.11103 -12.84115 -12.62548 -12.60976 -12.48953 -12.43360 -12.28721 -12.02723 -11.86713 -11.32942 -11.27231 -10.99013 -10.88130 -10.41169 -10.23861 -9.32852 -8.32688 -6.45392 1.39757 1.41425 1.55832 2.34208 2.71917 2.88479 3.01268 3.17738 3.23694 3.85243 3.93046 4.03851 4.13160 4.18371 4.32882 4.38474 4.50681 4.52963 4.55999 4.62457 4.66248 4.76029 4.79510 4.84912 4.89323 4.94771 4.98443 4.99736 5.17431 5.19920 5.22804 5.54138 5.94832 6.07410 6.29991 6.43016 6.52281 6.80635 7.26698 8.80049 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.004176 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.552513 B = 6702.757297 C = 7043.902893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.389 6.389 3 C 0.124 3.876 4 H 0.053 0.947 5 C 0.067 3.933 6 N -0.694 5.694 7 C 0.077 3.923 8 C 0.055 3.945 9 O -0.408 6.408 10 C 0.210 3.790 11 C -0.547 4.547 12 H 0.063 0.937 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.182 4.182 20 C -0.175 4.175 21 C -0.169 4.169 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.340 0.660 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.040 0.960 32 H -0.015 1.015 33 H -0.016 1.016 34 H 0.271 0.729 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 1.304 21.307 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.308 6.308 3 C 0.066 3.934 4 H 0.071 0.929 5 C -0.062 4.062 6 N -0.326 5.326 7 C -0.052 4.052 8 C -0.023 4.023 9 O -0.328 6.328 10 C 0.135 3.865 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.201 4.201 20 C -0.212 4.212 21 C -0.206 4.206 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.003 0.997 33 H 0.001 0.999 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.614 0.544 21.343 21.359 hybrid contribution -0.248 1.121 -0.956 1.494 sum -0.862 1.665 20.387 20.473 Atomic orbital electron populations 1.22848 0.80487 1.03331 1.00029 1.87924 1.20465 1.27540 1.94905 1.21636 0.94105 0.84665 0.92988 0.92924 1.22028 0.96171 1.00193 0.87803 1.60425 1.12727 1.56846 1.02590 1.21902 0.91450 1.00961 0.90914 1.22599 0.95224 0.90820 0.93612 1.87740 1.75601 1.44196 1.25313 1.19807 0.93545 0.95795 0.77310 1.21414 1.36236 1.04978 0.95865 0.91906 1.25981 0.96843 0.99824 0.96611 1.70085 1.47285 1.32345 1.07341 0.85117 0.77975 0.77967 0.78214 1.18732 1.19632 1.19697 1.22736 1.06793 0.93222 0.97327 1.23110 0.93246 1.02121 1.02743 1.22995 0.97448 0.96251 1.03861 0.92882 0.94786 0.88931 0.90078 0.92923 0.84223 0.94524 0.87939 0.93183 0.94163 0.99678 0.99871 0.92034 0.87000 0.89026 0.87339 0.87112 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.79 113.37 1.22 1.85 16 2 O -0.39 -10.40 10.30 -148.98 -1.53 -11.93 16 3 C 0.12 2.89 2.47 30.59 0.08 2.97 16 4 H 0.05 1.28 7.64 -2.39 -0.02 1.26 16 5 C 0.07 1.64 5.30 86.30 0.46 2.10 16 6 N -0.69 -21.65 6.45 -513.87 -3.32 -24.96 16 7 C 0.08 2.34 6.11 86.30 0.53 2.87 16 8 C 0.05 2.12 6.28 71.98 0.45 2.57 16 9 O -0.41 -20.22 9.84 -148.98 -1.47 -21.69 16 10 C 0.21 12.10 5.69 71.24 0.41 12.50 16 11 C -0.55 -32.94 9.43 25.60 0.24 -32.70 16 12 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 15 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C -0.18 -3.29 5.36 -10.80 -0.06 -3.34 16 20 C -0.18 -2.65 10.18 30.61 0.31 -2.34 16 21 C -0.17 -2.57 9.74 30.62 0.30 -2.27 16 22 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 23 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.05 1.17 7.49 -2.39 -0.02 1.16 16 27 H 0.34 11.84 8.29 -89.69 -0.74 11.10 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.49 7.91 -2.39 -0.02 1.47 16 Total: -1.00 -67.28 328.89 0.65 -66.63 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.26 Total: 16.71 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.40 Total: -14.99 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.03 Total: -81.28 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -3.00 Total: -33.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.28 0.65 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385262509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.711 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds