Wall clock time and date at job start Mon Mar 30 2020 04:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99979 * 2 1 4 4 C 1.53005 * 109.47146 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47173 * 304.99883 * 4 3 2 6 6 O 1.42897 * 109.46848 * 54.99682 * 5 4 3 7 7 C 1.42903 * 114.00001 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47007 * 64.99957 * 4 3 2 9 9 C 1.46901 * 110.99974 * 155.00051 * 8 4 3 10 10 C 1.53005 * 109.47018 * 185.40166 * 9 8 4 11 11 C 1.50697 * 115.54803 * 294.79974 * 10 9 8 12 12 H 1.08002 * 120.00065 * 95.20620 * 11 10 9 13 13 C 1.37878 * 120.00235 * 274.92761 * 11 10 9 14 14 N 1.31516 * 119.99772 * 355.42449 * 13 11 10 15 15 Si 1.86801 * 120.00155 * 175.42086 * 13 11 10 16 16 H 1.48496 * 109.47300 * 90.00318 * 15 13 11 17 17 H 1.48501 * 109.46981 * 210.00331 * 15 13 11 18 18 H 1.48504 * 109.47263 * 330.00105 * 15 13 11 19 19 C 1.52997 * 117.49966 * 80.47306 * 10 9 8 20 20 C 1.52997 * 117.49715 * 149.13413 * 10 9 8 21 21 H 1.08999 * 109.46536 * 60.00458 * 1 2 3 22 22 H 1.09007 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47548 * 299.99987 * 1 2 3 24 24 H 1.09005 * 109.47252 * 59.99741 * 3 2 1 25 25 H 1.08995 * 109.47225 * 299.99795 * 3 2 1 26 26 H 1.08999 * 109.46769 * 185.00059 * 4 3 2 27 27 H 1.08990 * 109.47420 * 174.99966 * 5 4 3 28 28 H 1.08997 * 109.46784 * 295.00273 * 5 4 3 29 29 H 1.09000 * 109.46615 * 300.00310 * 7 6 5 30 30 H 1.08992 * 109.47119 * 60.00244 * 7 6 5 31 31 H 1.08999 * 109.47195 * 180.02562 * 7 6 5 32 32 H 1.00899 * 111.00320 * 278.95387 * 8 4 3 33 33 H 1.09001 * 109.47161 * 65.40096 * 9 8 4 34 34 H 1.09000 * 109.47157 * 305.40166 * 9 8 4 35 35 H 0.97004 * 120.00039 * 184.99908 * 14 13 11 36 36 H 1.09001 * 117.49786 * 215.00051 * 19 10 9 37 37 H 1.08996 * 117.49687 * 0.02562 * 19 10 9 38 38 H 1.09001 * 117.50010 * 359.97158 * 20 10 9 39 39 H 1.08998 * 117.49740 * 144.97327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9781 0.3198 1.1826 6 8 3.3067 -0.9405 1.1285 7 6 3.6506 -1.8285 2.1940 8 7 3.9779 0.5622 -1.2542 9 6 5.3599 0.9449 -1.5730 10 6 5.7386 0.3898 -2.9476 11 6 5.7897 -1.1129 -3.0501 12 1 4.9306 -1.6591 -3.4107 13 6 6.9352 -1.7900 -2.6890 14 7 8.0126 -1.1207 -2.3412 15 14 6.9569 -3.6578 -2.6939 16 1 7.3881 -4.1444 -4.0289 17 1 7.9050 -4.1445 -1.6597 18 1 5.5949 -4.1695 -2.3967 19 6 5.2650 1.1661 -4.1780 20 6 6.7430 1.1892 -3.7801 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.9784 2.1765 0.0902 27 1 5.0551 0.1601 1.1328 28 1 3.7284 0.8246 2.1158 29 1 4.7209 -2.0328 2.1655 30 1 3.3938 -1.3681 3.1479 31 1 3.0997 -2.7622 2.0808 32 1 3.8807 -0.4413 -1.2141 33 1 6.0330 0.5375 -0.8186 34 1 5.4425 2.0317 -1.5847 35 1 8.8392 -1.5938 -2.1573 36 1 4.9904 0.5900 -5.0616 37 1 4.6840 2.0726 -4.0082 38 1 7.1336 2.1109 -3.3487 39 1 7.4409 0.6283 -4.4016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388406641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:07 Heat of formation + Delta-G solvation = -63.939412 kcal Electronic energy + Delta-G solvation = -18752.358948 eV Core-core repulsion = 15889.334928 eV Total energy + Delta-G solvation = -2863.024020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.47196 -36.82361 -36.60507 -34.27866 -31.81189 -29.70629 -27.04107 -26.02617 -25.44333 -24.65482 -23.85548 -20.88717 -20.12487 -18.96136 -16.51475 -15.89869 -15.84560 -15.62265 -15.26045 -14.75156 -14.53388 -14.37622 -13.72436 -13.53878 -13.20009 -12.54213 -12.36441 -11.98698 -11.53327 -11.44508 -11.24620 -11.04855 -10.87793 -10.83001 -10.79676 -10.45590 -10.36071 -10.01155 -9.32040 -9.18810 -9.11514 -8.76142 -8.30974 -7.96290 -7.36616 -5.93337 -3.99340 3.34072 3.40782 3.46916 4.07410 4.32586 4.48040 4.96593 5.25462 5.34524 5.38774 5.50696 5.55187 5.58395 5.63368 5.67690 5.73379 5.78725 5.83758 5.90692 5.95657 6.11640 6.22533 6.26392 6.56199 6.64866 6.91518 6.93465 7.00633 7.27759 7.55011 7.59251 7.64086 7.71230 7.97715 8.12378 8.48612 8.59836 9.04138 9.65957 11.13861 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.008208 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.596516 B = 3410.511624 C = 4093.111761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.078 3.922 4 C 0.090 3.910 5 C 0.033 3.967 6 O -0.352 6.352 7 C 0.032 3.968 8 N -0.667 5.667 9 C 0.103 3.897 10 C 0.049 3.951 11 C -0.486 4.486 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.883 5.883 15 Si 0.885 3.115 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.271 1.271 19 C -0.201 4.201 20 C -0.157 4.157 21 H 0.033 0.967 22 H 0.078 0.922 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.364 0.636 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.257 0.743 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 3.856 8.007 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.001 3.999 4 C -0.022 4.022 5 C -0.046 4.046 6 O -0.269 6.269 7 C -0.065 4.065 8 N -0.300 5.300 9 C -0.025 4.025 10 C 0.048 3.952 11 C -0.524 4.524 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.521 5.521 15 Si 0.713 3.287 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.196 1.196 19 C -0.238 4.238 20 C -0.195 4.195 21 H 0.052 0.948 22 H 0.097 0.903 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.756 4.083 7.584 13.014 hybrid contribution 0.754 -1.206 0.986 1.731 sum -9.002 2.877 8.570 12.758 Atomic orbital electron populations 1.22636 0.83206 1.01925 0.98744 1.88197 1.17342 1.26424 1.94938 1.22484 0.93251 0.85403 0.98789 1.21761 0.93804 0.97414 0.89198 1.23202 0.96359 0.86368 0.98629 1.88132 1.66183 1.25092 1.47526 1.22661 0.99664 0.94214 0.89976 1.60484 1.23552 1.17246 1.28684 1.21519 0.86977 0.96033 0.98020 1.18721 0.97158 0.92805 0.86525 1.20480 0.99307 0.89365 1.43253 0.92201 1.24982 0.95798 0.97778 0.94783 1.70015 1.00440 1.35001 1.46603 0.86697 0.78021 0.86438 0.77565 1.20848 1.21467 1.19572 1.22862 0.97430 1.01821 1.01712 1.22499 0.91094 1.00284 1.05639 0.94831 0.90342 0.95349 0.94622 0.92991 0.88951 0.93339 0.94453 0.94632 0.95194 0.90117 0.81474 0.95330 0.94532 0.93310 0.90993 0.91829 0.92453 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.35 -5.79 8.21 -58.58 -0.48 -6.27 16 3 C 0.08 1.17 5.77 37.16 0.21 1.38 16 4 C 0.09 1.48 2.90 -67.71 -0.20 1.28 16 5 C 0.03 0.54 5.61 37.16 0.21 0.75 16 6 O -0.35 -6.18 7.63 -58.58 -0.45 -6.63 16 7 C 0.03 0.46 11.01 101.05 1.11 1.57 16 8 N -0.67 -13.63 6.16 -106.72 -0.66 -14.29 16 9 C 0.10 2.33 5.37 -3.82 -0.02 2.31 16 10 C 0.05 1.22 1.65 -155.66 -0.26 0.96 16 11 C -0.49 -13.40 8.33 -34.44 -0.29 -13.69 16 12 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 13 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 14 N -0.88 -25.22 12.65 55.43 0.70 -24.52 16 15 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.20 -4.62 9.96 -26.69 -0.27 -4.89 16 20 C -0.16 -3.82 9.14 -26.69 -0.24 -4.07 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 27 H 0.05 0.86 7.44 -51.93 -0.39 0.47 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.36 8.35 7.52 -39.29 -0.30 8.06 16 33 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 34 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 36 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -29.49 321.71 -6.70 -36.19 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.92 Total: 5.22 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 1.28 Total: -11.06 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.04 Total: -38.81 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.93 Total: -12.90 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.49 -6.70 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388406641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.748 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds