Wall clock time and date at job start Mon Mar 30 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99979 * 2 1 4 4 C 1.53005 * 109.47146 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47173 * 304.99883 * 4 3 2 6 6 O 1.42897 * 109.46848 * 54.99682 * 5 4 3 7 7 C 1.42903 * 114.00001 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47007 * 64.99957 * 4 3 2 9 9 C 1.46901 * 110.99974 * 155.00051 * 8 4 3 10 10 C 1.53005 * 109.47018 * 185.40166 * 9 8 4 11 11 C 1.50697 * 115.54803 * 294.79974 * 10 9 8 12 12 H 1.08002 * 120.00065 * 95.20620 * 11 10 9 13 13 C 1.37878 * 120.00235 * 274.92761 * 11 10 9 14 14 N 1.31516 * 119.99772 * 355.42449 * 13 11 10 15 15 Si 1.86801 * 120.00155 * 175.42086 * 13 11 10 16 16 H 1.48496 * 109.47300 * 90.00318 * 15 13 11 17 17 H 1.48501 * 109.46981 * 210.00331 * 15 13 11 18 18 H 1.48504 * 109.47263 * 330.00105 * 15 13 11 19 19 C 1.52997 * 117.49966 * 80.47306 * 10 9 8 20 20 C 1.52997 * 117.49715 * 149.13413 * 10 9 8 21 21 H 1.08999 * 109.46536 * 60.00458 * 1 2 3 22 22 H 1.09007 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47548 * 299.99987 * 1 2 3 24 24 H 1.09005 * 109.47252 * 59.99741 * 3 2 1 25 25 H 1.08995 * 109.47225 * 299.99795 * 3 2 1 26 26 H 1.08999 * 109.46769 * 185.00059 * 4 3 2 27 27 H 1.08990 * 109.47420 * 174.99966 * 5 4 3 28 28 H 1.08997 * 109.46784 * 295.00273 * 5 4 3 29 29 H 1.09000 * 109.46615 * 300.00310 * 7 6 5 30 30 H 1.08992 * 109.47119 * 60.00244 * 7 6 5 31 31 H 1.08999 * 109.47195 * 180.02562 * 7 6 5 32 32 H 1.00899 * 111.00320 * 278.95387 * 8 4 3 33 33 H 1.09001 * 109.47161 * 65.40096 * 9 8 4 34 34 H 1.09000 * 109.47157 * 305.40166 * 9 8 4 35 35 H 0.97004 * 120.00039 * 184.99908 * 14 13 11 36 36 H 1.09001 * 117.49786 * 215.00051 * 19 10 9 37 37 H 1.08996 * 117.49687 * 0.02562 * 19 10 9 38 38 H 1.09001 * 117.50010 * 359.97158 * 20 10 9 39 39 H 1.08998 * 117.49740 * 144.97327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9781 0.3198 1.1826 6 8 3.3067 -0.9405 1.1285 7 6 3.6506 -1.8285 2.1940 8 7 3.9779 0.5622 -1.2542 9 6 5.3599 0.9449 -1.5730 10 6 5.7386 0.3898 -2.9476 11 6 5.7897 -1.1129 -3.0501 12 1 4.9306 -1.6591 -3.4107 13 6 6.9352 -1.7900 -2.6890 14 7 8.0126 -1.1207 -2.3412 15 14 6.9569 -3.6578 -2.6939 16 1 7.3881 -4.1444 -4.0289 17 1 7.9050 -4.1445 -1.6597 18 1 5.5949 -4.1695 -2.3967 19 6 5.2650 1.1661 -4.1780 20 6 6.7430 1.1892 -3.7801 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.9784 2.1765 0.0902 27 1 5.0551 0.1601 1.1328 28 1 3.7284 0.8246 2.1158 29 1 4.7209 -2.0328 2.1655 30 1 3.3938 -1.3681 3.1479 31 1 3.0997 -2.7622 2.0808 32 1 3.8807 -0.4413 -1.2141 33 1 6.0330 0.5375 -0.8186 34 1 5.4425 2.0317 -1.5847 35 1 8.8392 -1.5938 -2.1573 36 1 4.9904 0.5900 -5.0616 37 1 4.6840 2.0726 -4.0082 38 1 7.1336 2.1109 -3.3487 39 1 7.4409 0.6283 -4.4016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388406641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:06 Heat of formation + Delta-G solvation = -82.983239 kcal Electronic energy + Delta-G solvation = -18753.184750 eV Core-core repulsion = 15889.334928 eV Total energy + Delta-G solvation = -2863.849822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78835 -38.40420 -37.98238 -35.76699 -33.92348 -31.14180 -28.15483 -27.64921 -27.01082 -25.87733 -25.50408 -22.78463 -21.46521 -20.89140 -18.05547 -17.48967 -17.14939 -16.92294 -16.59767 -16.46146 -16.08818 -15.63610 -15.46177 -15.02622 -14.62417 -14.18650 -13.67393 -13.48841 -13.10027 -12.93150 -12.88678 -12.79057 -12.54814 -12.43285 -12.25607 -11.97426 -11.92017 -11.69335 -11.14972 -10.80561 -10.46772 -10.34637 -10.24628 -9.87374 -9.00169 -8.05647 -6.16358 1.38979 1.41256 1.51605 2.44249 2.88380 3.21023 3.22314 3.43539 3.81269 4.04161 4.17425 4.37628 4.40923 4.49009 4.52904 4.56924 4.59656 4.67110 4.68333 4.73195 4.77248 4.85273 4.87311 4.95390 4.99278 5.10339 5.11233 5.15022 5.34787 5.69980 5.75012 5.84888 6.33977 6.44383 6.52211 6.65158 6.72747 6.92381 7.51004 9.00849 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.008208 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.596516 B = 3410.511624 C = 4093.111761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.083 3.917 4 C 0.083 3.917 5 C 0.037 3.963 6 O -0.375 6.375 7 C 0.028 3.972 8 N -0.667 5.667 9 C 0.120 3.880 10 C 0.023 3.977 11 C -0.497 4.497 12 H 0.046 0.954 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.270 1.270 19 C -0.180 4.180 20 C -0.160 4.160 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.347 0.653 33 H -0.002 1.002 34 H 0.054 0.946 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 4.453 8.868 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.301 6.301 3 C 0.005 3.995 4 C -0.027 4.027 5 C -0.041 4.041 6 O -0.294 6.294 7 C -0.069 4.069 8 N -0.298 5.298 9 C -0.010 4.010 10 C 0.022 3.978 11 C -0.535 4.535 12 H 0.064 0.936 13 C -0.174 4.174 14 N -0.546 5.546 15 Si 0.767 3.233 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.217 4.217 20 C -0.199 4.199 21 H 0.057 0.943 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.129 4.692 8.447 14.739 hybrid contribution 1.122 -1.383 0.729 1.925 sum -10.007 3.309 9.176 13.975 Atomic orbital electron populations 1.22775 0.81428 1.02680 0.99913 1.88155 1.19403 1.27338 1.95203 1.22456 0.91692 0.85233 1.00090 1.21990 0.95351 0.97841 0.87558 1.23146 0.94836 0.86349 0.99794 1.88102 1.66405 1.25849 1.48996 1.22799 0.99232 0.94467 0.90364 1.60475 1.21833 1.16067 1.31416 1.21251 0.87624 0.96489 0.95625 1.18901 0.98382 0.91983 0.88513 1.20668 0.98823 0.91067 1.42990 0.93576 1.25589 0.95571 1.01509 0.94690 1.70106 1.00756 1.36314 1.47470 0.85812 0.77868 0.81959 0.77611 1.20376 1.21156 1.19489 1.22835 0.96428 1.02032 1.00380 1.22399 0.91393 1.00484 1.05584 0.94315 0.89922 0.93414 0.91734 0.93105 0.87193 0.95729 0.91566 0.95629 0.92810 0.89187 0.83421 0.98369 0.92810 0.93387 0.91435 0.89425 0.91000 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.90 16 2 O -0.38 -11.91 8.21 -126.65 -1.04 -12.95 16 3 C 0.08 2.26 5.77 71.98 0.42 2.67 16 4 C 0.08 2.61 2.90 44.92 0.13 2.74 16 5 C 0.04 1.17 5.61 71.98 0.40 1.57 16 6 O -0.38 -12.84 7.63 -126.65 -0.97 -13.80 16 7 C 0.03 0.77 11.01 113.37 1.25 2.02 16 8 N -0.67 -26.86 6.16 -491.56 -3.03 -29.89 16 9 C 0.12 5.34 5.37 86.30 0.46 5.81 16 10 C 0.02 1.14 1.65 -52.93 -0.09 1.06 16 11 C -0.50 -27.79 8.33 25.60 0.21 -27.57 16 12 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 13 C 0.03 1.46 5.43 84.65 0.46 1.92 16 14 N -0.91 -52.61 12.65 21.45 0.27 -52.34 16 15 Si 0.94 44.74 29.54 68.60 2.03 46.76 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.18 -8.06 9.96 30.62 0.30 -7.75 16 20 C -0.16 -7.79 9.14 30.62 0.28 -7.51 16 21 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 3.02 7.71 -2.39 -0.02 3.00 16 27 H 0.02 0.87 7.44 -2.39 -0.02 0.86 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.35 16.05 7.52 -89.69 -0.67 15.38 16 33 H 0.00 -0.10 7.49 -2.39 -0.02 -0.11 16 34 H 0.05 2.18 7.87 -2.39 -0.02 2.17 16 35 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 36 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -62.84 321.71 2.67 -60.17 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.33 Total: 25.19 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 5.08 Total: -23.15 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.76 Total: -82.23 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -2.01 Total: -26.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.84 2.67 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388406641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.810 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds