Wall clock time and date at job start Mon Mar 30 2020 04:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09009 * 110.05565 * 28.58119 * 3 2 1 5 5 C 1.54266 * 110.02991 * 267.16966 * 3 2 1 6 6 C 1.54899 * 104.19319 * 217.10076 * 5 3 2 7 7 C 1.54891 * 102.74611 * 37.94376 * 6 5 3 8 8 C 1.53869 * 110.03622 * 149.99938 * 3 2 1 9 9 H 1.09001 * 110.03290 * 238.57432 * 8 3 2 10 10 N 1.46906 * 110.03214 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00215 * 203.61925 * 10 8 3 12 12 C 1.53003 * 109.46958 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.46943 * 65.00139 * 12 11 10 14 14 C 1.42905 * 114.00008 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47334 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00249 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47111 * 89.99555 * 19 17 15 21 21 H 1.48498 * 109.47003 * 209.99745 * 19 17 15 22 22 H 1.48498 * 109.46875 * 330.00053 * 19 17 15 23 23 H 1.08993 * 109.47019 * 60.00235 * 1 2 3 24 24 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47079 * 299.99743 * 1 2 3 26 26 H 1.08998 * 110.48811 * 98.43060 * 5 3 2 27 27 H 1.08993 * 110.60227 * 335.83087 * 5 3 2 28 28 H 1.08997 * 110.75810 * 279.62763 * 6 5 3 29 29 H 1.08996 * 110.91000 * 156.32706 * 6 5 3 30 30 H 1.09000 * 110.48374 * 203.37774 * 7 6 5 31 31 H 1.08995 * 110.49176 * 80.73636 * 7 6 5 32 32 H 1.00900 * 111.00171 * 327.57998 * 10 8 3 33 33 H 1.08999 * 109.47223 * 300.00509 * 11 10 8 34 34 H 1.08998 * 109.47297 * 60.00595 * 11 10 8 35 35 H 1.08999 * 109.47116 * 185.00268 * 12 11 10 36 36 H 1.08991 * 109.47104 * 304.99926 * 12 11 10 37 37 H 1.09003 * 109.47050 * 300.00361 * 14 13 12 38 38 H 1.09003 * 109.46576 * 59.99686 * 14 13 12 39 39 H 0.96998 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2906 1.7590 -1.4476 6 6 3.6253 2.5389 -1.3495 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7228 9 1 3.3580 1.9715 1.5635 10 7 3.6589 -0.0822 1.1962 11 6 4.6019 -0.0575 2.3222 12 6 4.8799 -1.4887 2.7861 13 8 5.5507 -2.2044 1.7469 14 6 5.8590 -3.5595 2.0799 15 6 6.5614 -4.2147 0.9188 16 1 6.7537 -3.6525 0.0169 17 6 6.9588 -5.5320 1.0078 18 7 6.7251 -6.2165 2.1062 19 14 7.8302 -6.3441 -0.4311 20 1 9.2963 -6.1516 -0.2944 21 1 7.5204 -7.7963 -0.4417 22 1 7.3666 -5.7297 -1.7011 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4932 2.4110 -1.8042 27 1 2.4001 0.8968 -2.1053 28 1 3.4544 3.5534 -0.9896 29 1 4.1391 2.5530 -2.3107 30 1 5.1881 2.3358 0.1622 31 1 4.8817 0.8450 -0.7829 32 1 2.8101 -0.5672 1.4458 33 1 5.5346 0.4089 2.0049 34 1 4.1712 0.5140 3.1444 35 1 5.5085 -1.4665 3.6762 36 1 3.9377 -1.9846 3.0191 37 1 6.5081 -3.5799 2.9553 38 1 4.9371 -4.0986 2.2985 39 1 7.0050 -7.1431 2.1690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395510483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:07 Heat of formation + Delta-G solvation = -98.732777 kcal Electronic energy + Delta-G solvation = -17937.825172 eV Core-core repulsion = 15073.292399 eV Total energy + Delta-G solvation = -2864.532773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.38429 -36.88124 -36.04427 -34.09191 -32.52332 -29.28338 -28.26479 -27.01110 -26.23589 -25.29961 -22.20255 -21.53469 -20.72656 -19.84372 -16.91227 -16.47452 -16.06569 -15.67026 -15.25530 -15.02870 -14.61003 -14.38224 -14.02339 -13.72359 -13.41585 -13.06224 -12.53028 -12.41772 -11.87830 -11.51087 -11.38668 -11.21197 -11.09900 -10.95703 -10.86113 -10.71304 -10.64291 -10.55225 -10.30276 -9.88255 -9.60780 -8.97600 -8.69181 -8.03445 -7.95095 -6.00803 -4.01093 3.37519 3.41922 3.48786 3.61714 4.44535 4.46466 4.51776 4.57353 4.96146 5.03737 5.10718 5.20923 5.25203 5.35690 5.37556 5.45372 5.54776 5.61299 5.65836 5.79482 5.80309 5.82252 5.96698 6.03080 6.12909 6.19252 6.21010 6.42755 6.51821 7.07582 7.22777 7.48109 7.55955 7.87154 7.92035 8.28650 8.74799 9.14366 9.63386 11.11051 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.004666 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.452138 B = 5999.645906 C = 6096.783292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.082 3.918 4 H 0.059 0.941 5 C -0.142 4.142 6 C -0.122 4.122 7 C -0.116 4.116 8 C 0.086 3.914 9 H 0.045 0.955 10 N -0.658 5.658 11 C 0.064 3.936 12 C 0.067 3.933 13 O -0.378 6.378 14 C 0.193 3.807 15 C -0.508 4.508 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.902 5.902 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.038 0.962 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.350 0.650 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.001 0.999 38 H 0.003 0.997 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 17.702 -2.573 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.283 6.283 3 C 0.023 3.977 4 H 0.077 0.923 5 C -0.180 4.180 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.025 4.025 9 H 0.063 0.937 10 N -0.293 5.293 11 C -0.065 4.065 12 C -0.012 4.012 13 O -0.298 6.298 14 C 0.119 3.881 15 C -0.546 4.546 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.587 17.300 -3.131 20.523 hybrid contribution -0.463 -0.110 0.442 0.650 sum -11.050 17.190 -2.690 20.612 Atomic orbital electron populations 1.22803 0.81676 1.02877 0.99401 1.88017 1.18834 1.26867 1.94596 1.22971 0.94195 0.84616 0.95882 0.92254 1.22832 0.97545 1.00525 0.97061 1.22378 0.95760 0.98129 0.99759 1.22478 0.96913 1.00108 0.95874 1.22251 0.92938 0.91129 0.96197 0.93735 1.60334 1.17911 1.14032 1.37033 1.22043 0.97080 0.96232 0.91169 1.22205 0.95826 0.91791 0.91339 1.87961 1.77014 1.26588 1.38209 1.20173 0.94500 0.77010 0.96424 1.21081 1.36679 0.95942 1.00895 0.91511 1.24943 0.96285 0.96887 0.96489 1.69970 1.47564 1.09887 1.26726 0.86352 0.79644 0.78190 0.82408 1.20563 1.21182 1.19594 0.94310 0.89467 0.94496 0.92053 0.89972 0.91929 0.91185 0.92050 0.89317 0.82804 0.90626 0.95366 0.94420 0.94883 0.98109 0.97919 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.88 8.31 -35.23 -0.29 -5.18 16 3 C 0.08 0.95 3.37 -25.62 -0.09 0.86 16 4 H 0.06 0.57 7.81 -51.92 -0.41 0.17 16 5 C -0.14 -1.50 6.56 -25.07 -0.16 -1.66 16 6 C -0.12 -1.23 6.91 -24.73 -0.17 -1.40 16 7 C -0.12 -1.46 6.43 -25.07 -0.16 -1.62 16 8 C 0.09 1.11 3.24 -66.59 -0.22 0.89 16 9 H 0.04 0.53 7.83 -51.93 -0.41 0.12 16 10 N -0.66 -10.74 5.96 -105.55 -0.63 -11.37 16 11 C 0.06 1.03 5.90 -3.83 -0.02 1.01 16 12 C 0.07 1.31 6.22 37.16 0.23 1.55 16 13 O -0.38 -9.71 10.27 -35.23 -0.36 -10.07 16 14 C 0.19 5.57 5.69 36.00 0.20 5.78 16 15 C -0.51 -15.61 9.43 -34.44 -0.32 -15.93 16 16 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.82 13.29 55.43 0.74 -27.09 16 19 Si 0.91 22.59 29.54 -169.99 -5.02 17.57 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.30 8.10 -51.93 -0.42 -0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.00 8.08 -51.93 -0.42 0.59 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 32 H 0.35 5.77 6.94 -39.29 -0.27 5.50 16 33 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -33.08 319.26 -7.42 -40.50 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.96 Total: -1.55 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 0.29 Total: -7.62 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.11 Total: -38.46 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.65 Total: -15.25 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.08 -7.42 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395510483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.233 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds