Wall clock time and date at job start Mon Mar 30 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09009 * 110.05565 * 28.58119 * 3 2 1 5 5 C 1.54266 * 110.02991 * 267.16966 * 3 2 1 6 6 C 1.54899 * 104.19319 * 217.10076 * 5 3 2 7 7 C 1.54891 * 102.74611 * 37.94376 * 6 5 3 8 8 C 1.53869 * 110.03622 * 149.99938 * 3 2 1 9 9 H 1.09001 * 110.03290 * 238.57432 * 8 3 2 10 10 N 1.46906 * 110.03214 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00215 * 203.61925 * 10 8 3 12 12 C 1.53003 * 109.46958 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.46943 * 65.00139 * 12 11 10 14 14 C 1.42905 * 114.00008 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47334 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00249 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47111 * 89.99555 * 19 17 15 21 21 H 1.48498 * 109.47003 * 209.99745 * 19 17 15 22 22 H 1.48498 * 109.46875 * 330.00053 * 19 17 15 23 23 H 1.08993 * 109.47019 * 60.00235 * 1 2 3 24 24 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47079 * 299.99743 * 1 2 3 26 26 H 1.08998 * 110.48811 * 98.43060 * 5 3 2 27 27 H 1.08993 * 110.60227 * 335.83087 * 5 3 2 28 28 H 1.08997 * 110.75810 * 279.62763 * 6 5 3 29 29 H 1.08996 * 110.91000 * 156.32706 * 6 5 3 30 30 H 1.09000 * 110.48374 * 203.37774 * 7 6 5 31 31 H 1.08995 * 110.49176 * 80.73636 * 7 6 5 32 32 H 1.00900 * 111.00171 * 327.57998 * 10 8 3 33 33 H 1.08999 * 109.47223 * 300.00509 * 11 10 8 34 34 H 1.08998 * 109.47297 * 60.00595 * 11 10 8 35 35 H 1.08999 * 109.47116 * 185.00268 * 12 11 10 36 36 H 1.08991 * 109.47104 * 304.99926 * 12 11 10 37 37 H 1.09003 * 109.47050 * 300.00361 * 14 13 12 38 38 H 1.09003 * 109.46576 * 59.99686 * 14 13 12 39 39 H 0.96998 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2906 1.7590 -1.4476 6 6 3.6253 2.5389 -1.3495 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7228 9 1 3.3580 1.9715 1.5635 10 7 3.6589 -0.0822 1.1962 11 6 4.6019 -0.0575 2.3222 12 6 4.8799 -1.4887 2.7861 13 8 5.5507 -2.2044 1.7469 14 6 5.8590 -3.5595 2.0799 15 6 6.5614 -4.2147 0.9188 16 1 6.7537 -3.6525 0.0169 17 6 6.9588 -5.5320 1.0078 18 7 6.7251 -6.2165 2.1062 19 14 7.8302 -6.3441 -0.4311 20 1 9.2963 -6.1516 -0.2944 21 1 7.5204 -7.7963 -0.4417 22 1 7.3666 -5.7297 -1.7011 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4932 2.4110 -1.8042 27 1 2.4001 0.8968 -2.1053 28 1 3.4544 3.5534 -0.9896 29 1 4.1391 2.5530 -2.3107 30 1 5.1881 2.3358 0.1622 31 1 4.8817 0.8450 -0.7829 32 1 2.8101 -0.5672 1.4458 33 1 5.5346 0.4089 2.0049 34 1 4.1712 0.5140 3.1444 35 1 5.5085 -1.4665 3.6762 36 1 3.9377 -1.9846 3.0191 37 1 6.5081 -3.5799 2.9553 38 1 4.9371 -4.0986 2.2985 39 1 7.0050 -7.1431 2.1690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395510483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:03 Heat of formation + Delta-G solvation = -122.385075 kcal Electronic energy + Delta-G solvation = -17938.850813 eV Core-core repulsion = 15073.292399 eV Total energy + Delta-G solvation = -2865.558414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 6.46 seconds Orbital eigenvalues (eV) -40.32618 -38.64005 -37.13420 -35.45934 -34.68535 -30.74735 -29.16516 -28.93658 -27.25898 -26.41955 -24.46250 -22.93911 -21.63985 -20.81646 -18.63096 -17.85505 -17.53734 -17.18776 -16.54321 -16.45005 -16.06884 -15.77909 -15.12782 -15.05042 -14.83487 -14.41913 -14.00172 -13.72663 -13.33030 -13.09202 -12.84982 -12.69172 -12.39171 -12.29999 -12.18454 -12.05363 -11.87880 -11.80684 -11.58522 -11.41841 -11.24181 -10.84592 -10.47483 -10.17208 -9.13510 -8.30677 -6.42561 1.39629 1.43180 1.55565 2.36471 2.73964 3.02685 3.26760 3.43049 3.61629 3.69152 4.13109 4.25795 4.29097 4.31751 4.45194 4.49582 4.50442 4.56632 4.62298 4.65381 4.76187 4.80468 4.86132 4.92862 5.02432 5.04480 5.09942 5.17380 5.20834 5.28668 5.50154 5.56922 5.99075 6.14469 6.42519 6.58551 6.68692 6.88702 7.29680 8.81918 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.004666 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.452138 B = 5999.645906 C = 6096.783292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.080 3.920 4 H 0.085 0.915 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.119 4.119 8 C 0.081 3.919 9 H 0.064 0.936 10 N -0.684 5.684 11 C 0.075 3.925 12 C 0.056 3.944 13 O -0.396 6.396 14 C 0.209 3.791 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.267 1.267 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.346 0.654 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.035 0.965 37 H -0.016 1.016 38 H -0.019 1.019 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 19.004 -3.204 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.022 3.978 4 H 0.103 0.897 5 C -0.178 4.178 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.029 4.029 9 H 0.082 0.918 10 N -0.319 5.319 11 C -0.054 4.054 12 C -0.021 4.021 13 O -0.315 6.315 14 C 0.133 3.867 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.191 1.191 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.002 0.998 38 H -0.001 1.001 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.017 18.628 -3.750 21.965 hybrid contribution -0.389 -0.478 0.708 0.938 sum -11.405 18.150 -3.043 21.651 Atomic orbital electron populations 1.22945 0.80036 1.03326 1.00800 1.87972 1.20813 1.28179 1.94802 1.23090 0.93766 0.84579 0.96350 0.89671 1.22821 0.98667 1.00093 0.96213 1.22367 0.94870 0.98787 0.99124 1.22458 0.97455 0.99187 0.96591 1.22406 0.94007 0.89629 0.96849 0.91786 1.60283 1.17916 1.16491 1.37253 1.21937 0.97308 0.93671 0.92507 1.22580 0.95493 0.93376 0.90673 1.87920 1.77792 1.25168 1.40646 1.19797 0.92909 0.78590 0.95371 1.21377 1.38537 0.97161 1.01296 0.92393 1.25962 0.96414 0.97076 0.99733 1.70071 1.47741 1.10547 1.28745 0.85180 0.78683 0.77331 0.78188 1.19075 1.19694 1.19138 0.92994 0.89648 0.92889 0.89559 0.92452 0.89379 0.90944 0.91174 0.93218 0.83207 0.91159 0.91737 0.93376 0.94682 0.99784 1.00087 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 113.37 1.23 1.68 16 2 O -0.40 -10.41 8.31 -148.98 -1.24 -11.65 16 3 C 0.08 1.71 3.37 31.32 0.11 1.82 16 4 H 0.09 1.36 7.81 -2.38 -0.02 1.34 16 5 C -0.14 -2.73 6.56 31.67 0.21 -2.52 16 6 C -0.11 -2.07 6.91 31.89 0.22 -1.85 16 7 C -0.12 -2.92 6.43 31.67 0.20 -2.71 16 8 C 0.08 1.99 3.24 45.64 0.15 2.14 16 9 H 0.06 1.33 7.83 -2.39 -0.02 1.31 16 10 N -0.68 -22.22 5.96 -487.84 -2.91 -25.13 16 11 C 0.07 2.36 5.90 86.31 0.51 2.87 16 12 C 0.06 2.24 6.22 71.98 0.45 2.69 16 13 O -0.40 -20.97 10.27 -148.98 -1.53 -22.50 16 14 C 0.21 12.49 5.69 71.23 0.41 12.89 16 15 C -0.55 -34.43 9.43 25.60 0.24 -34.19 16 16 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 19 Si 0.98 46.24 29.54 68.60 2.03 48.27 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.35 11.45 6.94 -89.69 -0.62 10.83 16 33 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 34 H 0.06 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.53 319.26 1.19 -71.34 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.38 Total: 13.66 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 4.18 Total: -16.34 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.62 Total: -82.78 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -2.77 Total: -34.15 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.53 1.19 -71.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395510483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.046 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds