Wall clock time and date at job start Mon Mar 30 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53003 * 112.93961 * 48.43168 * 4 3 2 6 6 C 1.53930 * 113.73197 * 276.72335 * 4 3 2 7 7 N 1.47958 * 86.18313 * 221.92298 * 6 4 3 8 8 C 1.46898 * 111.00155 * 137.58255 * 7 6 4 9 9 C 1.53002 * 109.47060 * 70.64510 * 8 7 6 10 10 O 1.42899 * 109.47475 * 64.99709 * 9 8 7 11 11 C 1.42897 * 113.99957 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99562 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00105 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00277 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47299 * 60.00354 * 16 14 12 18 18 H 1.48507 * 109.46693 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47106 * 299.99917 * 16 14 12 20 20 C 1.47959 * 90.76303 * 24.68847 * 7 6 4 21 21 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.08997 * 109.46868 * 69.66940 * 5 4 3 27 27 H 1.09002 * 109.46894 * 189.66741 * 5 4 3 28 28 H 1.08998 * 109.46850 * 309.66662 * 5 4 3 29 29 H 1.09003 * 113.76505 * 336.24140 * 6 4 3 30 30 H 1.09005 * 113.76000 * 107.60631 * 6 4 3 31 31 H 1.09007 * 109.47130 * 190.64338 * 8 7 6 32 32 H 1.08994 * 109.47152 * 310.64199 * 8 7 6 33 33 H 1.09003 * 109.47108 * 185.00466 * 9 8 7 34 34 H 1.09003 * 109.46944 * 304.99644 * 9 8 7 35 35 H 1.08994 * 109.47852 * 300.00364 * 11 10 9 36 36 H 1.09004 * 109.46828 * 60.00534 * 11 10 9 37 37 H 0.97001 * 120.00246 * 179.97438 * 15 14 12 38 38 H 1.08993 * 113.76433 * 220.99075 * 20 7 6 39 39 H 1.09005 * 113.75935 * 89.62442 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0995 0.5752 -1.0532 6 6 4.0608 1.3449 1.4003 7 7 4.9415 2.4598 0.9874 8 6 5.0946 3.4391 2.0716 9 6 5.9440 2.8327 3.1904 10 8 7.2674 2.5934 2.7075 11 6 8.1470 2.0251 3.6798 12 6 9.5071 1.8158 3.0655 13 1 9.6823 2.0899 2.0355 14 6 10.5276 1.2746 3.8181 15 7 10.3141 0.9404 5.0720 16 14 12.2137 1.0159 3.0566 17 1 12.7569 2.3209 2.6015 18 1 13.1274 0.4241 4.0667 19 1 12.0971 0.0965 1.8964 20 6 3.9371 2.9140 0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.8812 0.9656 -2.0471 27 1 5.1777 0.5713 -0.8931 28 1 3.7161 -0.4417 -0.9699 29 1 3.3790 1.6011 2.2113 30 1 4.5895 0.4065 1.5680 31 1 5.5852 4.3333 1.6869 32 1 4.1126 3.7036 2.4636 33 1 5.9837 3.5243 4.0320 34 1 5.4997 1.8915 3.5144 35 1 8.2325 2.7002 4.5312 36 1 7.7486 1.0672 4.0143 37 1 11.0321 0.5593 5.6014 38 1 4.3668 3.2293 -0.9502 39 1 3.2190 3.6290 0.4020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399854055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:51 Heat of formation + Delta-G solvation = -62.733237 kcal Electronic energy + Delta-G solvation = -17841.988574 eV Core-core repulsion = 14979.016858 eV Total energy + Delta-G solvation = -2862.971716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48478 -37.35826 -36.30408 -32.82247 -31.97788 -30.69144 -28.78824 -26.88245 -26.26026 -24.63650 -22.71602 -22.24737 -21.10379 -19.21088 -17.14561 -16.36370 -15.87936 -15.84213 -15.23638 -15.08520 -14.77410 -14.26495 -13.94601 -13.56584 -13.17086 -13.04237 -12.63839 -12.57731 -12.15914 -12.08315 -11.92234 -11.51765 -11.49016 -11.27316 -10.90200 -10.80095 -10.68121 -10.39423 -10.34330 -9.94540 -9.54148 -9.06350 -8.77475 -8.63934 -8.10257 -6.06553 -4.07656 3.35476 3.37499 3.42021 3.43789 4.02893 4.32810 4.39061 4.77251 4.86802 4.88731 4.93297 5.08144 5.18851 5.29314 5.29754 5.38593 5.46619 5.51214 5.64076 5.68726 5.69262 5.79365 5.84595 5.88846 5.93006 5.95413 6.12993 6.13537 6.30051 6.52900 7.11865 7.16358 7.17937 7.47860 7.84907 8.21226 8.65824 9.06726 9.57018 11.05143 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.004139 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.233497 B = 6764.044941 C = 6940.130095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.377 6.377 4 C 0.083 3.917 5 C -0.157 4.157 6 C -0.018 4.018 7 N -0.452 5.452 8 C 0.028 3.972 9 C 0.069 3.931 10 O -0.381 6.381 11 C 0.195 3.805 12 C -0.511 4.511 13 H 0.066 0.934 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.016 3.984 21 H 0.069 0.931 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.955 -0.316 -9.255 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.296 6.296 4 C 0.043 3.957 5 C -0.214 4.214 6 C -0.147 4.147 7 N -0.176 5.176 8 C -0.100 4.100 9 C -0.010 4.010 10 O -0.300 6.300 11 C 0.120 3.880 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.113 4.113 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.240 -0.310 -9.470 19.672 hybrid contribution 0.174 -0.226 0.547 0.617 sum -17.066 -0.536 -8.923 19.265 Atomic orbital electron populations 1.21747 0.94013 1.02096 1.02911 1.22449 0.95068 0.84432 1.00398 1.87942 1.20485 1.26329 1.94802 1.23430 0.80117 0.96957 0.95176 1.22032 1.02690 0.98792 0.97864 1.24604 0.95097 0.98282 0.96708 1.68626 1.32762 1.06227 1.09986 1.22675 0.98001 0.96532 0.92825 1.22169 0.86571 0.97941 0.94279 1.87942 1.18477 1.83667 1.39964 1.20171 0.88313 0.91935 0.87568 1.21036 0.93943 1.41172 0.98822 0.91539 1.24949 0.99341 0.95429 0.94837 1.69957 1.33349 1.43163 1.07572 0.86396 0.82717 0.78618 0.78737 1.20018 1.21220 1.20005 1.24158 0.93405 0.94557 0.99134 0.91239 0.92011 0.92014 0.92947 0.93314 0.91719 0.89517 0.92013 0.90890 0.89020 0.89680 0.93523 0.94213 0.94766 0.97997 0.97966 0.92678 0.88641 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.52 6.00 37.16 0.22 0.74 16 3 O -0.38 -4.62 10.31 -35.23 -0.36 -4.99 16 4 C 0.08 1.04 1.43 -89.69 -0.13 0.91 16 5 C -0.16 -1.78 8.80 37.16 0.33 -1.45 16 6 C -0.02 -0.25 6.37 -2.77 -0.02 -0.27 16 7 N -0.45 -7.15 6.07 -238.19 -1.45 -8.60 16 8 C 0.03 0.45 5.20 -3.82 -0.02 0.43 16 9 C 0.07 1.33 6.09 37.16 0.23 1.56 16 10 O -0.38 -9.60 10.27 -35.23 -0.36 -9.96 16 11 C 0.19 5.51 5.69 36.01 0.20 5.72 16 12 C -0.51 -15.48 9.43 -34.44 -0.32 -15.81 16 13 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 16 Si 0.91 22.26 29.54 -169.99 -5.02 17.23 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.02 0.21 7.38 -2.77 -0.02 0.19 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.47 6.40 -51.93 -0.33 0.13 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.12 8.00 -51.93 -0.42 0.71 16 28 H 0.06 0.62 6.27 -51.93 -0.33 0.29 16 29 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 30 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.05 0.62 7.69 -51.93 -0.40 0.22 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.65 7.41 -51.93 -0.38 0.27 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -32.49 319.87 -7.74 -40.23 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -6.86 Total: -4.75 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.75 Total: -7.27 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.71 Total: -35.32 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.73 Total: -14.95 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.49 -7.74 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399854055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.503 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds