Wall clock time and date at job start Mon Mar 30 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53003 * 112.93961 * 48.43168 * 4 3 2 6 6 C 1.53930 * 113.73197 * 276.72335 * 4 3 2 7 7 N 1.47958 * 86.18313 * 221.92298 * 6 4 3 8 8 C 1.46898 * 111.00155 * 137.58255 * 7 6 4 9 9 C 1.53002 * 109.47060 * 70.64510 * 8 7 6 10 10 O 1.42899 * 109.47475 * 64.99709 * 9 8 7 11 11 C 1.42897 * 113.99957 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99562 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00105 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00277 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47299 * 60.00354 * 16 14 12 18 18 H 1.48507 * 109.46693 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47106 * 299.99917 * 16 14 12 20 20 C 1.47959 * 90.76303 * 24.68847 * 7 6 4 21 21 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.08997 * 109.46868 * 69.66940 * 5 4 3 27 27 H 1.09002 * 109.46894 * 189.66741 * 5 4 3 28 28 H 1.08998 * 109.46850 * 309.66662 * 5 4 3 29 29 H 1.09003 * 113.76505 * 336.24140 * 6 4 3 30 30 H 1.09005 * 113.76000 * 107.60631 * 6 4 3 31 31 H 1.09007 * 109.47130 * 190.64338 * 8 7 6 32 32 H 1.08994 * 109.47152 * 310.64199 * 8 7 6 33 33 H 1.09003 * 109.47108 * 185.00466 * 9 8 7 34 34 H 1.09003 * 109.46944 * 304.99644 * 9 8 7 35 35 H 1.08994 * 109.47852 * 300.00364 * 11 10 9 36 36 H 1.09004 * 109.46828 * 60.00534 * 11 10 9 37 37 H 0.97001 * 120.00246 * 179.97438 * 15 14 12 38 38 H 1.08993 * 113.76433 * 220.99075 * 20 7 6 39 39 H 1.09005 * 113.75935 * 89.62442 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0995 0.5752 -1.0532 6 6 4.0608 1.3449 1.4003 7 7 4.9415 2.4598 0.9874 8 6 5.0946 3.4391 2.0716 9 6 5.9440 2.8327 3.1904 10 8 7.2674 2.5934 2.7075 11 6 8.1470 2.0251 3.6798 12 6 9.5071 1.8158 3.0655 13 1 9.6823 2.0899 2.0355 14 6 10.5276 1.2746 3.8181 15 7 10.3141 0.9404 5.0720 16 14 12.2137 1.0159 3.0566 17 1 12.7569 2.3209 2.6015 18 1 13.1274 0.4241 4.0667 19 1 12.0971 0.0965 1.8964 20 6 3.9371 2.9140 0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.8812 0.9656 -2.0471 27 1 5.1777 0.5713 -0.8931 28 1 3.7161 -0.4417 -0.9699 29 1 3.3790 1.6011 2.2113 30 1 4.5895 0.4065 1.5680 31 1 5.5852 4.3333 1.6869 32 1 4.1126 3.7036 2.4636 33 1 5.9837 3.5243 4.0320 34 1 5.4997 1.8915 3.5144 35 1 8.2325 2.7002 4.5312 36 1 7.7486 1.0672 4.0143 37 1 11.0321 0.5593 5.6014 38 1 4.3668 3.2293 -0.9502 39 1 3.2190 3.6290 0.4020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399854055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:50 Heat of formation + Delta-G solvation = -86.702093 kcal Electronic energy + Delta-G solvation = -17843.027942 eV Core-core repulsion = 14979.016858 eV Total energy + Delta-G solvation = -2864.011084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54818 -38.73522 -37.80265 -34.97867 -33.17997 -31.60082 -30.14554 -28.86583 -27.33847 -25.85930 -24.48665 -23.53312 -22.39158 -20.22257 -18.66393 -18.15683 -17.52525 -16.88038 -16.63083 -16.45210 -16.12117 -15.90233 -15.30827 -15.00648 -14.36845 -14.22721 -13.92519 -13.70376 -13.34377 -13.17912 -13.09687 -12.91963 -12.81276 -12.76193 -12.64847 -12.23889 -12.15115 -11.86844 -11.66802 -11.33681 -11.28955 -10.86820 -10.46936 -10.22975 -9.78480 -8.32482 -6.45020 1.39428 1.44771 1.53140 2.34789 2.52202 2.94719 3.01030 3.19187 3.35201 3.81498 3.86259 4.05468 4.17720 4.22063 4.35257 4.38858 4.44215 4.50074 4.52230 4.54975 4.64246 4.70967 4.78709 4.87514 4.88439 4.93678 5.00643 5.05496 5.16276 5.22385 5.28638 5.34388 5.54445 5.95134 6.00754 6.27778 6.54495 6.83169 7.27153 8.79852 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.004139 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.233497 B = 6764.044941 C = 6940.130095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.386 6.386 4 C 0.092 3.908 5 C -0.153 4.153 6 C -0.021 4.021 7 N -0.484 5.484 8 C 0.037 3.963 9 C 0.060 3.940 10 O -0.396 6.396 11 C 0.210 3.790 12 C -0.549 4.549 13 H 0.061 0.939 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.984 3.016 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.265 1.265 20 C 0.021 3.979 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.034 0.966 35 H -0.016 1.016 36 H -0.019 1.019 37 H 0.271 0.729 38 H 0.104 0.896 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.284 -0.383 -10.434 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.305 6.305 4 C 0.052 3.948 5 C -0.211 4.211 6 C -0.150 4.150 7 N -0.208 5.208 8 C -0.092 4.092 9 C -0.018 4.018 10 O -0.316 6.316 11 C 0.135 3.865 12 C -0.586 4.586 13 H 0.079 0.921 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.190 1.190 20 C -0.107 4.107 21 H 0.107 0.893 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.002 0.998 36 H -0.001 1.001 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.602 -0.370 -10.652 20.577 hybrid contribution 0.164 -0.216 0.952 0.989 sum -17.438 -0.586 -9.700 19.963 Atomic orbital electron populations 1.21755 0.92551 1.03346 1.02748 1.22672 0.96292 0.83397 1.00791 1.87930 1.19935 1.27876 1.94783 1.23284 0.80516 0.96871 0.94141 1.21996 1.01294 0.99507 0.98257 1.24610 0.94969 0.97179 0.98208 1.68582 1.34622 1.06936 1.10677 1.22608 0.98547 0.96102 0.91898 1.22506 0.84365 0.98529 0.96378 1.87896 1.20719 1.83372 1.39612 1.19791 0.88715 0.90544 0.87490 1.21360 0.95416 1.42842 0.98989 0.92106 1.25983 1.03812 0.94223 0.95213 1.70065 1.35084 1.43024 1.08937 0.85221 0.76862 0.79072 0.78172 1.18929 1.19846 1.19013 1.24191 0.92806 0.95075 0.98676 0.89322 0.92456 0.91861 0.91960 0.93528 0.90318 0.91472 0.90826 0.90366 0.90650 0.89756 0.90420 0.93283 0.94773 0.99805 1.00120 0.92011 0.87802 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.79 6.00 71.98 0.43 1.22 16 3 O -0.39 -8.81 10.31 -148.98 -1.54 -10.35 16 4 C 0.09 2.18 1.43 -10.15 -0.01 2.17 16 5 C -0.15 -3.31 8.80 71.98 0.63 -2.68 16 6 C -0.02 -0.57 6.37 86.40 0.55 -0.02 16 7 N -0.48 -15.03 6.07 -910.72 -5.53 -20.56 16 8 C 0.04 1.13 5.20 86.30 0.45 1.58 16 9 C 0.06 2.33 6.09 71.98 0.44 2.77 16 10 O -0.40 -20.46 10.27 -148.98 -1.53 -21.99 16 11 C 0.21 12.30 5.69 71.24 0.41 12.71 16 12 C -0.55 -33.84 9.43 25.60 0.24 -33.60 16 13 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.98 45.29 29.54 68.60 2.03 47.31 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.02 0.50 7.38 86.41 0.64 1.14 16 21 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.98 6.40 -2.39 -0.02 0.97 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 28 H 0.07 1.38 6.27 -2.39 -0.01 1.37 16 29 H 0.08 2.06 7.78 -2.39 -0.02 2.04 16 30 H 0.08 2.31 8.10 -2.38 -0.02 2.29 16 31 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.08 1.91 7.69 -2.39 -0.02 1.89 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.33 7.41 -2.39 -0.02 1.31 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 39 H 0.09 1.87 7.79 -2.38 -0.02 1.85 16 Total: -1.00 -69.62 319.87 -0.32 -69.94 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.99 Total: 7.76 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.97 Total: -15.19 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -5.24 Total: -77.48 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -3.07 Total: -32.34 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.62 -0.32 -69.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399854055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.764 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds