Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99547 * 2 1 4 4 C 1.52992 * 109.50642 * 64.06055 * 3 2 1 5 5 O 1.42898 * 109.47591 * 58.96114 * 4 3 2 6 6 C 1.53119 * 109.50125 * 184.13809 * 3 2 1 7 7 C 1.53118 * 109.16380 * 62.32401 * 6 3 2 8 8 C 1.53036 * 109.27959 * 57.65343 * 7 6 3 9 9 N 1.46847 * 109.52240 * 300.82626 * 8 7 6 10 10 C 1.46907 * 111.00068 * 185.83813 * 9 8 7 11 11 C 1.52993 * 109.47323 * 66.04101 * 10 9 8 12 12 C 1.50696 * 109.47446 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99779 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00222 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46929 * 59.99663 * 16 14 12 18 18 H 1.48501 * 109.47046 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47114 * 299.99912 * 16 14 12 20 20 C 1.46848 * 111.20128 * 61.73962 * 9 8 7 21 21 H 1.08996 * 109.47225 * 65.85891 * 1 2 3 22 22 H 1.09004 * 109.46840 * 185.85960 * 1 2 3 23 23 H 1.09004 * 109.46889 * 305.85304 * 1 2 3 24 24 H 1.09005 * 109.47381 * 298.95790 * 4 3 2 25 25 H 1.09008 * 109.47221 * 178.96239 * 4 3 2 26 26 H 0.96696 * 114.00728 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.52408 * 182.22866 * 6 3 2 28 28 H 1.09005 * 109.52112 * 302.35702 * 6 3 2 29 29 H 1.08995 * 109.51139 * 177.59617 * 7 6 3 30 30 H 1.09009 * 109.50206 * 297.71726 * 7 6 3 31 31 H 1.08998 * 109.46173 * 60.83937 * 8 7 6 32 32 H 1.09001 * 109.46900 * 180.80965 * 8 7 6 33 33 H 1.09001 * 109.47336 * 186.04576 * 10 9 8 34 34 H 1.09000 * 109.46968 * 306.04408 * 10 9 8 35 35 H 1.09001 * 109.47302 * 300.00495 * 11 10 9 36 36 H 1.09000 * 109.46848 * 60.00234 * 11 10 9 37 37 H 0.97000 * 120.00197 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46348 * 178.24156 * 20 9 8 39 39 H 1.08996 * 109.46213 * 58.27331 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6416 2.0287 1.2968 5 8 2.1162 1.2749 2.4142 6 6 3.5332 1.1870 -0.1042 7 6 3.8955 0.5163 -1.4320 8 6 3.3130 1.3342 -2.5868 9 7 1.8541 1.4178 -2.4420 10 6 1.2464 2.0774 -3.6056 11 6 1.4396 1.2031 -4.8461 12 6 0.8169 1.8800 -6.0398 13 1 0.3321 2.8382 -5.9251 14 6 0.8659 1.2760 -7.2783 15 7 1.4567 0.1094 -7.4180 16 14 0.0945 2.1155 -8.7580 17 1 0.7454 3.4325 -8.9750 18 1 0.2820 1.2668 -9.9621 19 1 -1.3565 2.3149 -8.5134 20 6 1.4823 2.1007 -1.1963 21 1 -0.3633 0.4203 -0.9377 22 1 -0.3633 -1.0223 0.1049 23 1 -0.3633 0.6019 0.8330 24 1 0.5582 2.1304 1.3609 25 1 2.1003 3.0175 1.3044 26 1 1.9170 1.6749 3.2717 27 1 3.9794 2.1807 -0.0644 28 1 3.9092 0.5854 0.7234 29 1 4.9799 0.4676 -1.5313 30 1 3.4818 -0.4920 -1.4553 31 1 3.7375 2.3380 -2.5713 32 1 3.5569 0.8516 -3.5332 33 1 0.1812 2.2226 -3.4257 34 1 1.7231 3.0446 -3.7649 35 1 2.5048 1.0579 -5.0260 36 1 0.9629 0.2359 -4.6867 37 1 1.4915 -0.3153 -8.2894 38 1 0.3967 2.1746 -1.1327 39 1 1.9154 3.1008 -1.1872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401774989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = -97.255313 kcal Electronic energy + Delta-G solvation = -18725.625702 eV Core-core repulsion = 15861.156996 eV Total energy + Delta-G solvation = -2864.468706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88636 -36.95843 -35.96929 -33.73975 -32.40453 -30.71270 -29.25758 -26.62572 -25.71792 -25.02502 -22.76565 -21.73364 -19.81163 -19.39706 -17.45844 -16.49178 -16.15337 -15.65038 -15.07892 -14.95421 -14.57512 -14.30307 -13.86008 -13.47296 -13.10400 -12.96478 -12.53384 -12.24091 -12.19389 -12.02995 -11.88017 -11.22642 -10.97578 -10.85998 -10.64328 -10.50510 -10.33772 -10.23524 -9.95899 -9.71415 -9.49030 -9.12256 -9.05148 -8.30709 -7.65289 -5.97360 -4.00067 3.34085 3.38680 3.40642 3.73463 4.22666 4.44510 4.60123 4.77129 4.89066 5.13434 5.17608 5.31372 5.37983 5.42260 5.53762 5.62218 5.66200 5.73099 5.78864 5.96811 6.00618 6.06577 6.11323 6.22833 6.31265 6.48579 6.58865 6.72566 6.98058 7.41389 7.51951 7.54491 7.65053 7.82051 7.93048 8.11614 8.45393 9.07034 9.63300 11.13889 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.042849 B = 0.005052 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.306580 B = 5541.202923 C = 5713.536505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.126 3.874 4 C 0.051 3.949 5 O -0.557 6.557 6 C -0.099 4.099 7 C -0.115 4.115 8 C 0.054 3.946 9 N -0.525 5.525 10 C 0.064 3.936 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.032 3.968 21 H 0.050 0.950 22 H 0.080 0.920 23 H 0.030 0.970 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.373 0.627 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 4.062 17.576 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.086 3.914 4 C -0.027 4.027 5 O -0.361 6.361 6 C -0.137 4.137 7 C -0.152 4.152 8 C -0.074 4.074 9 N -0.250 5.250 10 C -0.063 4.063 11 C -0.008 4.008 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.097 4.097 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.219 0.781 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.409 2.881 16.967 17.268 hybrid contribution -0.653 2.015 -0.479 2.172 sum 0.757 4.896 16.488 17.216 Atomic orbital electron populations 1.22705 0.82089 1.02127 0.99712 1.87992 1.18889 1.25428 1.94528 1.21487 0.94989 0.84381 0.90548 1.22779 0.97904 0.94360 0.87693 1.86574 1.81980 1.51556 1.16008 1.21463 0.92148 1.00990 0.99076 1.21561 0.99425 1.00976 0.93266 1.22145 0.87462 0.97998 0.99746 1.61891 1.09500 1.52385 1.01187 1.22342 0.97430 0.95911 0.90574 1.19081 0.97285 0.95199 0.89231 1.21150 1.36618 1.05218 0.93242 0.92947 1.24981 0.95458 0.94908 0.98860 1.69961 1.43537 1.15656 1.23959 0.86671 0.79813 0.79375 0.82183 1.20342 1.21258 1.20267 1.22540 1.00667 0.95151 0.91345 0.93135 0.90168 0.95118 0.93394 0.93050 0.78123 0.91649 0.90633 0.91941 0.90226 0.95919 0.89341 0.92332 0.96346 0.96412 0.95645 0.92936 0.90742 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.13 101.05 1.02 1.44 16 2 O -0.35 -5.70 9.56 -45.64 -0.44 -6.14 16 3 C 0.13 1.80 0.50 -90.54 -0.05 1.75 16 4 C 0.05 0.57 5.67 37.15 0.21 0.79 16 5 O -0.56 -6.22 12.96 -45.64 -0.59 -6.82 16 6 C -0.10 -1.38 4.84 -26.61 -0.13 -1.51 16 7 C -0.11 -1.75 5.94 -26.65 -0.16 -1.91 16 8 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 9 N -0.53 -9.87 4.54 -234.67 -1.07 -10.93 16 10 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 11 C 0.03 0.77 4.91 -27.89 -0.14 0.64 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.03 0.49 3.74 -3.83 -0.01 0.48 16 21 H 0.05 0.75 6.68 -51.93 -0.35 0.40 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.36 6.29 -51.93 -0.33 0.03 16 24 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.37 2.28 9.12 45.56 0.42 2.69 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.36 7.80 -51.92 -0.40 0.96 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 1.76 6.22 -51.93 -0.32 1.44 16 33 H 0.06 1.23 7.98 -51.93 -0.41 0.81 16 34 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.02 0.49 6.44 -51.93 -0.33 0.16 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.10 6.46 -51.93 -0.34 0.76 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -32.33 304.20 -7.23 -39.56 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.74 Total: -1.00 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.30 Total: -9.66 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.33 Total: -37.25 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.03 Total: -12.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.33 -7.23 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401774989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.697 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds