Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99547 * 2 1 4 4 C 1.52992 * 109.50642 * 64.06055 * 3 2 1 5 5 O 1.42898 * 109.47591 * 58.96114 * 4 3 2 6 6 C 1.53119 * 109.50125 * 184.13809 * 3 2 1 7 7 C 1.53118 * 109.16380 * 62.32401 * 6 3 2 8 8 C 1.53036 * 109.27959 * 57.65343 * 7 6 3 9 9 N 1.46847 * 109.52240 * 300.82626 * 8 7 6 10 10 C 1.46907 * 111.00068 * 185.83813 * 9 8 7 11 11 C 1.52993 * 109.47323 * 66.04101 * 10 9 8 12 12 C 1.50696 * 109.47446 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99779 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00222 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46929 * 59.99663 * 16 14 12 18 18 H 1.48501 * 109.47046 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47114 * 299.99912 * 16 14 12 20 20 C 1.46848 * 111.20128 * 61.73962 * 9 8 7 21 21 H 1.08996 * 109.47225 * 65.85891 * 1 2 3 22 22 H 1.09004 * 109.46840 * 185.85960 * 1 2 3 23 23 H 1.09004 * 109.46889 * 305.85304 * 1 2 3 24 24 H 1.09005 * 109.47381 * 298.95790 * 4 3 2 25 25 H 1.09008 * 109.47221 * 178.96239 * 4 3 2 26 26 H 0.96696 * 114.00728 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.52408 * 182.22866 * 6 3 2 28 28 H 1.09005 * 109.52112 * 302.35702 * 6 3 2 29 29 H 1.08995 * 109.51139 * 177.59617 * 7 6 3 30 30 H 1.09009 * 109.50206 * 297.71726 * 7 6 3 31 31 H 1.08998 * 109.46173 * 60.83937 * 8 7 6 32 32 H 1.09001 * 109.46900 * 180.80965 * 8 7 6 33 33 H 1.09001 * 109.47336 * 186.04576 * 10 9 8 34 34 H 1.09000 * 109.46968 * 306.04408 * 10 9 8 35 35 H 1.09001 * 109.47302 * 300.00495 * 11 10 9 36 36 H 1.09000 * 109.46848 * 60.00234 * 11 10 9 37 37 H 0.97000 * 120.00197 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46348 * 178.24156 * 20 9 8 39 39 H 1.08996 * 109.46213 * 58.27331 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6416 2.0287 1.2968 5 8 2.1162 1.2749 2.4142 6 6 3.5332 1.1870 -0.1042 7 6 3.8955 0.5163 -1.4320 8 6 3.3130 1.3342 -2.5868 9 7 1.8541 1.4178 -2.4420 10 6 1.2464 2.0774 -3.6056 11 6 1.4396 1.2031 -4.8461 12 6 0.8169 1.8800 -6.0398 13 1 0.3321 2.8382 -5.9251 14 6 0.8659 1.2760 -7.2783 15 7 1.4567 0.1094 -7.4180 16 14 0.0945 2.1155 -8.7580 17 1 0.7454 3.4325 -8.9750 18 1 0.2820 1.2668 -9.9621 19 1 -1.3565 2.3149 -8.5134 20 6 1.4823 2.1007 -1.1963 21 1 -0.3633 0.4203 -0.9377 22 1 -0.3633 -1.0223 0.1049 23 1 -0.3633 0.6019 0.8330 24 1 0.5582 2.1304 1.3609 25 1 2.1003 3.0175 1.3044 26 1 1.9170 1.6749 3.2717 27 1 3.9794 2.1807 -0.0644 28 1 3.9092 0.5854 0.7234 29 1 4.9799 0.4676 -1.5313 30 1 3.4818 -0.4920 -1.4553 31 1 3.7375 2.3380 -2.5713 32 1 3.5569 0.8516 -3.5332 33 1 0.1812 2.2226 -3.4257 34 1 1.7231 3.0446 -3.7649 35 1 2.5048 1.0579 -5.0260 36 1 0.9629 0.2359 -4.6867 37 1 1.4915 -0.3153 -8.2894 38 1 0.3967 2.1746 -1.1327 39 1 1.9154 3.1008 -1.1872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401774989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = -122.167772 kcal Electronic energy + Delta-G solvation = -18726.705987 eV Core-core repulsion = 15861.156996 eV Total energy + Delta-G solvation = -2865.548991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05920 -38.21300 -36.94713 -35.53505 -34.13608 -31.91109 -31.09997 -27.74208 -26.90088 -26.74048 -24.36997 -23.12424 -21.45099 -20.57400 -18.62071 -18.26129 -17.27796 -16.88426 -16.54211 -16.25947 -16.20147 -15.80780 -15.16230 -14.76165 -14.40079 -14.25761 -13.99543 -13.87802 -13.54437 -13.30789 -13.09997 -12.94431 -12.79569 -12.47579 -12.19886 -11.92088 -11.76558 -11.67703 -11.32096 -11.25463 -11.08261 -10.84119 -10.52988 -10.26960 -9.12161 -8.19147 -6.31164 1.40121 1.43578 1.51555 2.39930 2.68306 3.14011 3.16572 3.41937 3.73711 3.80206 4.07492 4.23802 4.28902 4.31051 4.40132 4.42593 4.53254 4.55869 4.58897 4.61640 4.69964 4.79035 4.90058 4.97042 5.00814 5.04041 5.08939 5.28445 5.42437 5.47100 5.67318 5.79003 6.11158 6.26920 6.33509 6.49285 6.86115 6.94293 7.38032 8.92862 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.042849 B = 0.005052 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.306580 B = 5541.202923 C = 5713.536505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.119 3.881 4 C 0.058 3.942 5 O -0.576 6.576 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.056 3.944 9 N -0.542 5.542 10 C 0.081 3.919 11 C 0.038 3.962 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.033 3.967 21 H 0.034 0.966 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.395 0.605 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.022 0.978 35 H -0.007 1.007 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 5.985 18.796 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.079 3.921 4 C -0.020 4.020 5 O -0.384 6.384 6 C -0.133 4.133 7 C -0.145 4.145 8 C -0.072 4.072 9 N -0.266 5.266 10 C -0.046 4.046 11 C 0.001 3.999 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.191 1.191 20 C -0.096 4.096 21 H 0.052 0.948 22 H 0.103 0.897 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.245 0.755 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.012 0.988 36 H 0.006 0.994 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.958 4.821 18.229 18.880 hybrid contribution -0.486 1.364 -0.808 1.658 sum 0.473 6.185 17.421 18.493 Atomic orbital electron populations 1.22756 0.81182 1.02893 0.99802 1.87956 1.20065 1.26997 1.94728 1.21648 0.94888 0.83790 0.91756 1.22633 0.98771 0.94461 0.86157 1.86511 1.82208 1.52406 1.17266 1.21468 0.92354 1.01862 0.97576 1.21486 1.00319 0.99265 0.93463 1.22097 0.87218 0.98670 0.99207 1.61768 1.10014 1.53122 1.01721 1.21959 0.97994 0.94812 0.89811 1.18895 0.95080 0.94341 0.91609 1.21593 1.36824 1.05724 0.94255 0.92074 1.25974 0.95804 0.95490 1.02355 1.70114 1.44839 1.17360 1.24891 0.85476 0.79193 0.78438 0.77768 1.19088 1.20873 1.19087 1.22616 1.01278 0.95788 0.89892 0.94761 0.89711 0.92696 0.92252 0.90860 0.75509 0.89532 0.90590 0.89951 0.92748 0.94678 0.92787 0.91898 0.95983 0.98830 0.99368 0.92779 0.90173 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.13 113.37 1.15 1.94 16 2 O -0.38 -12.00 9.56 -139.03 -1.33 -13.33 16 3 C 0.12 3.15 0.50 -10.74 -0.01 3.14 16 4 C 0.06 1.10 5.67 71.98 0.41 1.51 16 5 O -0.58 -11.05 12.96 -139.03 -1.80 -12.85 16 6 C -0.10 -2.45 4.84 30.67 0.15 -2.30 16 7 C -0.11 -3.26 5.94 30.65 0.18 -3.07 16 8 C 0.06 2.00 5.29 86.33 0.46 2.46 16 9 N -0.54 -20.44 4.54 -896.36 -4.07 -24.51 16 10 C 0.08 3.53 4.90 86.30 0.42 3.95 16 11 C 0.04 2.10 4.91 29.84 0.15 2.25 16 12 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 0.10 5.46 84.66 0.46 0.57 16 15 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 16 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.03 0.94 3.74 86.33 0.32 1.26 16 21 H 0.03 1.00 6.68 -2.39 -0.02 0.98 16 22 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 23 H 0.05 1.16 6.29 -2.39 -0.01 1.15 16 24 H 0.06 0.99 6.56 -2.38 -0.02 0.97 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.40 3.46 9.12 -74.06 -0.68 2.79 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.98 7.79 -2.38 -0.02 1.96 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.91 7.80 -2.38 -0.02 1.89 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 2.28 6.22 -2.39 -0.01 2.26 16 33 H 0.06 2.64 7.98 -2.39 -0.02 2.62 16 34 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 35 H -0.01 -0.39 6.44 -2.39 -0.02 -0.40 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.08 2.22 6.46 -2.39 -0.02 2.20 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -70.93 304.20 -0.61 -71.54 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.35 Total: 9.91 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.93 Total: -19.67 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.78 Total: -82.26 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -3.13 Total: -26.18 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.93 -0.61 -71.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401774989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.626 kcal (2) G-P(sol) polarization free energy of solvation -70.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds