Wall clock time and date at job start Mon Mar 30 2020 03:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00472 * 2 1 4 4 C 1.53003 * 109.50064 * 61.76361 * 3 2 1 5 5 O 1.42897 * 109.47139 * 57.52549 * 4 3 2 6 6 C 1.53117 * 109.50663 * 181.84900 * 3 2 1 7 7 C 1.53117 * 109.16301 * 62.32161 * 6 3 2 8 8 C 1.53033 * 109.27538 * 57.65719 * 7 6 3 9 9 N 1.46840 * 109.52621 * 300.81739 * 8 7 6 10 10 C 1.46897 * 111.00274 * 185.84072 * 9 8 7 11 11 H 1.09000 * 109.47320 * 186.04717 * 10 9 8 12 12 C 1.52999 * 109.47218 * 306.04652 * 10 9 8 13 13 C 1.50700 * 109.47027 * 66.04842 * 10 9 8 14 14 H 1.08000 * 120.00289 * 354.40275 * 13 10 9 15 15 C 1.37880 * 120.00260 * 174.40562 * 13 10 9 16 16 N 1.31513 * 120.00429 * 163.72248 * 15 13 10 17 17 Si 1.86802 * 119.99755 * 343.72056 * 15 13 10 18 18 H 1.48500 * 109.47042 * 270.00109 * 17 15 13 19 19 H 1.48497 * 109.47042 * 29.99909 * 17 15 13 20 20 H 1.48495 * 109.47329 * 150.00145 * 17 15 13 21 21 C 1.46847 * 111.19709 * 61.74487 * 9 8 7 22 22 H 1.08999 * 109.47427 * 66.08455 * 1 2 3 23 23 H 1.09000 * 109.47400 * 186.09042 * 1 2 3 24 24 H 1.09006 * 109.46772 * 306.08426 * 1 2 3 25 25 H 1.09004 * 109.46564 * 177.52735 * 4 3 2 26 26 H 1.09002 * 109.47215 * 297.52078 * 4 3 2 27 27 H 0.96691 * 113.99999 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.52093 * 302.41778 * 6 3 2 29 29 H 1.09005 * 109.57531 * 182.26346 * 6 3 2 30 30 H 1.08994 * 109.50236 * 297.71131 * 7 6 3 31 31 H 1.09005 * 109.50035 * 177.59718 * 7 6 3 32 32 H 1.09000 * 109.46069 * 180.80028 * 8 7 6 33 33 H 1.09004 * 109.45380 * 60.83384 * 8 7 6 34 34 H 1.09003 * 109.47288 * 298.75498 * 12 10 9 35 35 H 1.09002 * 109.47252 * 58.75810 * 12 10 9 36 36 H 1.09007 * 109.47325 * 178.75538 * 12 10 9 37 37 H 0.97003 * 119.99724 * 354.87773 * 16 15 13 38 38 H 1.08996 * 109.46399 * 58.27628 * 21 9 8 39 39 H 1.09001 * 109.46145 * 178.24382 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5947 2.0496 1.2706 5 8 1.9983 1.2975 2.4167 6 6 3.5360 1.1856 -0.0466 7 6 3.9463 0.4934 -1.3492 8 6 3.4066 1.2924 -2.5376 9 7 1.9435 1.3779 -2.4477 10 6 1.3790 2.0184 -3.6431 11 1 0.3080 2.1663 -3.5047 12 6 2.0564 3.3724 -3.8642 13 6 1.6135 1.1375 -4.8431 14 1 2.2078 0.2408 -4.7469 15 6 1.0695 1.4762 -6.0639 16 7 1.5184 0.9113 -7.1634 17 14 -0.3053 2.7375 -6.1561 18 1 -1.6165 2.0497 -6.0421 19 1 -0.1589 3.7114 -5.0447 20 1 -0.2334 3.4540 -7.4548 21 6 1.5267 2.0809 -1.2276 22 1 -0.3634 0.4166 -0.9394 23 1 -0.3634 -1.0218 0.1090 24 1 -0.3633 0.6053 0.8306 25 1 2.0736 3.0285 1.2913 26 1 0.5119 2.1745 1.2809 27 1 1.7671 1.7107 3.2597 28 1 3.8813 0.5967 0.8033 29 1 3.9818 2.1795 -0.0061 30 1 3.5335 -0.5151 -1.3711 31 1 5.0337 0.4435 -1.4079 32 1 3.6849 0.7945 -3.4664 33 1 3.8308 2.2965 -2.5226 34 1 1.8682 4.0173 -3.0058 35 1 3.1303 3.2267 -3.9807 36 1 1.6532 3.8378 -4.7637 37 1 2.2809 0.3128 -7.1247 38 1 1.9595 3.0812 -1.2190 39 1 0.4395 2.1555 -1.2049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401781081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:21 Heat of formation + Delta-G solvation = -86.334391 kcal Electronic energy + Delta-G solvation = -19406.828170 eV Core-core repulsion = 16542.833031 eV Total energy + Delta-G solvation = -2863.995139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80091 -37.07465 -35.91061 -33.85590 -32.02173 -30.54148 -28.98285 -26.51266 -25.58857 -24.93644 -23.35796 -21.57036 -19.72580 -18.87446 -17.38594 -17.18666 -16.06863 -15.64870 -15.08609 -14.80012 -14.20628 -14.15749 -13.45333 -13.34133 -13.06750 -12.80017 -12.67636 -12.30382 -11.87697 -11.81929 -11.63007 -11.45694 -11.20469 -10.77850 -10.56423 -10.42339 -10.16288 -10.02761 -9.93387 -9.67369 -9.59790 -9.05511 -8.83739 -8.21529 -7.25458 -6.40445 -3.99814 3.40448 3.42766 3.57184 3.86641 4.35162 4.52037 4.78846 4.90869 5.04638 5.24896 5.29622 5.32661 5.44903 5.56753 5.66289 5.77417 5.83681 5.90077 5.91331 6.12251 6.16173 6.20272 6.25244 6.29501 6.40678 6.44801 6.63752 6.75065 6.86161 6.96204 7.25629 7.51394 7.64162 7.79576 8.10337 8.34980 8.49404 9.02922 9.66658 10.98656 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.007284 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.617339 B = 3842.984102 C = 4058.610195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.127 3.873 4 C 0.051 3.949 5 O -0.557 6.557 6 C -0.098 4.098 7 C -0.116 4.116 8 C 0.063 3.937 9 N -0.507 5.507 10 C 0.187 3.813 11 H 0.030 0.970 12 C -0.180 4.180 13 C -0.581 4.581 14 H 0.065 0.935 15 C 0.030 3.970 16 N -0.909 5.909 17 Si 1.041 2.959 18 H -0.286 1.286 19 H -0.275 1.275 20 H -0.287 1.287 21 C 0.029 3.971 22 H 0.049 0.951 23 H 0.078 0.922 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.372 0.628 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.019 0.981 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.268 0.732 38 H 0.033 0.967 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 4.291 16.430 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.087 3.913 4 C -0.028 4.028 5 O -0.361 6.361 6 C -0.135 4.135 7 C -0.154 4.154 8 C -0.065 4.065 9 N -0.231 5.231 10 C 0.080 3.920 11 H 0.048 0.952 12 C -0.239 4.239 13 C -0.619 4.619 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.544 5.544 17 Si 0.870 3.130 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.213 1.213 21 C -0.100 4.100 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.217 0.783 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.707 3.965 14.913 15.447 hybrid contribution 0.826 0.874 1.420 1.861 sum 0.119 4.839 16.333 17.035 Atomic orbital electron populations 1.22679 0.82248 1.01920 0.99679 1.87973 1.18768 1.25566 1.94537 1.21504 0.94824 0.84299 0.90702 1.22808 0.98393 0.94421 0.87185 1.86580 1.83460 1.50472 1.15604 1.21446 0.92150 1.00761 0.99184 1.21595 0.99063 1.00982 0.93743 1.21998 0.88229 0.97585 0.98650 1.62041 1.09030 1.51204 1.00786 1.19691 0.93613 0.90195 0.88518 0.95246 1.22829 1.01686 1.00046 0.99355 1.21942 1.36900 1.10268 0.92828 0.91712 1.25639 1.00247 0.99684 0.91847 1.70795 1.25095 1.29771 1.28699 0.84149 0.76517 0.76634 0.75737 1.21332 1.20068 1.21341 1.22548 1.00355 0.95203 0.91887 0.93200 0.90343 0.95170 0.93112 0.93431 0.78266 0.90953 0.91779 0.90564 0.92411 0.89736 0.96031 0.96187 0.93224 0.92831 0.92191 0.94933 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.17 101.05 1.03 1.50 16 2 O -0.35 -6.23 9.53 -46.72 -0.45 -6.68 16 3 C 0.13 2.01 0.50 -90.54 -0.05 1.97 16 4 C 0.05 0.63 5.56 37.16 0.21 0.84 16 5 O -0.56 -6.81 12.99 -46.72 -0.61 -7.42 16 6 C -0.10 -1.51 4.86 -26.61 -0.13 -1.64 16 7 C -0.12 -1.97 5.94 -26.65 -0.16 -2.13 16 8 C 0.06 1.26 4.53 -3.84 -0.02 1.24 16 9 N -0.51 -10.73 4.48 -228.09 -1.02 -11.75 16 10 C 0.19 4.44 1.85 -68.87 -0.13 4.32 16 11 H 0.03 0.72 6.57 -51.93 -0.34 0.38 16 12 C -0.18 -3.94 7.84 37.16 0.29 -3.64 16 13 C -0.58 -16.19 8.27 -34.44 -0.28 -16.48 16 14 H 0.06 1.98 7.17 -52.49 -0.38 1.60 16 15 C 0.03 0.87 5.34 -17.82 -0.10 0.78 16 16 N -0.91 -27.86 13.70 55.43 0.76 -27.10 16 17 Si 1.04 25.01 26.24 -169.99 -4.46 20.55 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.03 5.52 56.52 0.31 -5.72 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.03 0.51 3.49 -3.83 -0.01 0.50 16 22 H 0.05 0.81 6.72 -51.93 -0.35 0.46 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.39 6.23 -51.93 -0.32 0.07 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.55 6.58 -51.93 -0.34 0.20 16 27 H 0.37 2.62 9.12 45.56 0.42 3.03 16 28 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.43 7.80 -51.93 -0.40 1.03 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.89 6.61 -51.93 -0.34 1.55 16 33 H 0.02 0.41 6.55 -51.93 -0.34 0.07 16 34 H 0.02 0.38 6.88 -51.93 -0.36 0.02 16 35 H 0.05 1.08 6.38 -51.93 -0.33 0.75 16 36 H 0.05 1.20 5.06 -51.93 -0.26 0.94 16 37 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 38 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 39 H 0.07 1.20 6.49 -51.93 -0.34 0.86 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -31.80 289.22 -6.15 -37.95 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.39 Total: 2.84 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 0.65 Total: -12.75 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.26 Total: -38.85 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.05 Total: -14.09 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.46 Total: 20.55 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.80 -6.15 -37.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401781081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.381 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds