Wall clock time and date at job start Mon Mar 30 2020 03:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00472 * 2 1 4 4 C 1.53003 * 109.50064 * 61.76361 * 3 2 1 5 5 O 1.42897 * 109.47139 * 57.52549 * 4 3 2 6 6 C 1.53117 * 109.50663 * 181.84900 * 3 2 1 7 7 C 1.53117 * 109.16301 * 62.32161 * 6 3 2 8 8 C 1.53033 * 109.27538 * 57.65719 * 7 6 3 9 9 N 1.46840 * 109.52621 * 300.81739 * 8 7 6 10 10 C 1.46897 * 111.00274 * 185.84072 * 9 8 7 11 11 H 1.09000 * 109.47320 * 186.04717 * 10 9 8 12 12 C 1.52999 * 109.47218 * 306.04652 * 10 9 8 13 13 C 1.50700 * 109.47027 * 66.04842 * 10 9 8 14 14 H 1.08000 * 120.00289 * 354.40275 * 13 10 9 15 15 C 1.37880 * 120.00260 * 174.40562 * 13 10 9 16 16 N 1.31513 * 120.00429 * 163.72248 * 15 13 10 17 17 Si 1.86802 * 119.99755 * 343.72056 * 15 13 10 18 18 H 1.48500 * 109.47042 * 270.00109 * 17 15 13 19 19 H 1.48497 * 109.47042 * 29.99909 * 17 15 13 20 20 H 1.48495 * 109.47329 * 150.00145 * 17 15 13 21 21 C 1.46847 * 111.19709 * 61.74487 * 9 8 7 22 22 H 1.08999 * 109.47427 * 66.08455 * 1 2 3 23 23 H 1.09000 * 109.47400 * 186.09042 * 1 2 3 24 24 H 1.09006 * 109.46772 * 306.08426 * 1 2 3 25 25 H 1.09004 * 109.46564 * 177.52735 * 4 3 2 26 26 H 1.09002 * 109.47215 * 297.52078 * 4 3 2 27 27 H 0.96691 * 113.99999 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.52093 * 302.41778 * 6 3 2 29 29 H 1.09005 * 109.57531 * 182.26346 * 6 3 2 30 30 H 1.08994 * 109.50236 * 297.71131 * 7 6 3 31 31 H 1.09005 * 109.50035 * 177.59718 * 7 6 3 32 32 H 1.09000 * 109.46069 * 180.80028 * 8 7 6 33 33 H 1.09004 * 109.45380 * 60.83384 * 8 7 6 34 34 H 1.09003 * 109.47288 * 298.75498 * 12 10 9 35 35 H 1.09002 * 109.47252 * 58.75810 * 12 10 9 36 36 H 1.09007 * 109.47325 * 178.75538 * 12 10 9 37 37 H 0.97003 * 119.99724 * 354.87773 * 16 15 13 38 38 H 1.08996 * 109.46399 * 58.27628 * 21 9 8 39 39 H 1.09001 * 109.46145 * 178.24382 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5947 2.0496 1.2706 5 8 1.9983 1.2975 2.4167 6 6 3.5360 1.1856 -0.0466 7 6 3.9463 0.4934 -1.3492 8 6 3.4066 1.2924 -2.5376 9 7 1.9435 1.3779 -2.4477 10 6 1.3790 2.0184 -3.6431 11 1 0.3080 2.1663 -3.5047 12 6 2.0564 3.3724 -3.8642 13 6 1.6135 1.1375 -4.8431 14 1 2.2078 0.2408 -4.7469 15 6 1.0695 1.4762 -6.0639 16 7 1.5184 0.9113 -7.1634 17 14 -0.3053 2.7375 -6.1561 18 1 -1.6165 2.0497 -6.0421 19 1 -0.1589 3.7114 -5.0447 20 1 -0.2334 3.4540 -7.4548 21 6 1.5267 2.0809 -1.2276 22 1 -0.3634 0.4166 -0.9394 23 1 -0.3634 -1.0218 0.1090 24 1 -0.3633 0.6053 0.8306 25 1 2.0736 3.0285 1.2913 26 1 0.5119 2.1745 1.2809 27 1 1.7671 1.7107 3.2597 28 1 3.8813 0.5967 0.8033 29 1 3.9818 2.1795 -0.0061 30 1 3.5335 -0.5151 -1.3711 31 1 5.0337 0.4435 -1.4079 32 1 3.6849 0.7945 -3.4664 33 1 3.8308 2.2965 -2.5226 34 1 1.8682 4.0173 -3.0058 35 1 3.1303 3.2267 -3.9807 36 1 1.6532 3.8378 -4.7637 37 1 2.2809 0.3128 -7.1247 38 1 1.9595 3.0812 -1.2190 39 1 0.4395 2.1555 -1.2049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401781081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:20 Heat of formation + Delta-G solvation = -112.375967 kcal Electronic energy + Delta-G solvation = -19407.957417 eV Core-core repulsion = 16542.833031 eV Total energy + Delta-G solvation = -2865.124386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11603 -38.48653 -36.95009 -35.53733 -33.94408 -31.83694 -30.68052 -27.68818 -27.00802 -26.67847 -24.95099 -22.98802 -21.33340 -20.36201 -19.29903 -18.26233 -17.37288 -17.00110 -16.40334 -16.13207 -15.80380 -15.63227 -15.10878 -14.76464 -14.42500 -14.34034 -14.02503 -13.63246 -13.57899 -13.22355 -13.10792 -13.00695 -12.89536 -12.45719 -12.04055 -11.99890 -11.66628 -11.48235 -11.41730 -11.10998 -10.96447 -10.83401 -10.42913 -10.25471 -8.88711 -8.68246 -6.29131 1.47002 1.53018 1.69972 2.52229 2.73949 3.10158 3.24946 3.49234 3.75803 3.83147 4.10664 4.25364 4.31852 4.38711 4.42299 4.44025 4.54664 4.58321 4.59142 4.66313 4.69920 4.75345 4.83212 4.89900 4.95929 4.98900 5.07781 5.15104 5.31209 5.39638 5.52756 5.86079 6.09141 6.32893 6.43724 6.64447 6.77573 6.94471 7.47574 8.68154 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.007284 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.617339 B = 3842.984102 C = 4058.610195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.120 3.880 4 C 0.059 3.941 5 O -0.576 6.576 6 C -0.093 4.093 7 C -0.109 4.109 8 C 0.069 3.931 9 N -0.529 5.529 10 C 0.188 3.812 11 H 0.032 0.968 12 C -0.174 4.174 13 C -0.579 4.579 14 H 0.018 0.982 15 C -0.023 4.023 16 N -0.944 5.944 17 Si 1.083 2.917 18 H -0.277 1.277 19 H -0.237 1.237 20 H -0.289 1.289 21 C 0.030 3.970 22 H 0.032 0.968 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.395 0.605 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.250 0.750 38 H 0.048 0.952 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 6.703 19.210 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.080 3.920 4 C -0.020 4.020 5 O -0.383 6.383 6 C -0.131 4.131 7 C -0.147 4.147 8 C -0.059 4.059 9 N -0.252 5.252 10 C 0.080 3.920 11 H 0.050 0.950 12 C -0.233 4.233 13 C -0.617 4.617 14 H 0.036 0.964 15 C -0.220 4.220 16 N -0.580 5.580 17 Si 0.905 3.095 18 H -0.203 1.203 19 H -0.160 1.160 20 H -0.215 1.215 21 C -0.099 4.099 22 H 0.051 0.949 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.556 6.377 17.751 18.925 hybrid contribution 1.164 0.004 0.614 1.316 sum -0.392 6.381 18.365 19.446 Atomic orbital electron populations 1.22741 0.81227 1.02825 0.99743 1.87940 1.20067 1.27102 1.94729 1.21649 0.94769 0.83781 0.91803 1.22635 0.99286 0.94402 0.85684 1.86516 1.83721 1.51315 1.16769 1.21448 0.92370 1.01630 0.97625 1.21507 1.00053 0.99254 0.93837 1.21885 0.87979 0.98031 0.98003 1.61875 1.09555 1.52331 1.01440 1.19517 0.94133 0.90339 0.88010 0.94977 1.22674 1.00927 0.99140 1.00532 1.22102 1.35275 1.09266 0.95088 0.96354 1.27132 1.02186 1.01249 0.91467 1.70934 1.25634 1.31410 1.30041 0.83647 0.73731 0.75168 0.76983 1.20276 1.16007 1.21477 1.22623 1.00802 0.95767 0.90673 0.94946 0.89741 0.92599 0.90887 0.92200 0.75538 0.90662 0.89619 0.93179 0.90392 0.93974 0.94943 0.92731 0.93935 0.93411 0.94108 0.93358 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.17 113.37 1.15 2.03 16 2 O -0.38 -12.93 9.53 -138.00 -1.32 -14.24 16 3 C 0.12 3.46 0.50 -10.74 -0.01 3.45 16 4 C 0.06 1.21 5.56 71.98 0.40 1.61 16 5 O -0.58 -11.79 12.99 -138.00 -1.79 -13.58 16 6 C -0.09 -2.63 4.86 30.67 0.15 -2.48 16 7 C -0.11 -3.63 5.94 30.64 0.18 -3.45 16 8 C 0.07 2.75 4.53 86.33 0.39 3.14 16 9 N -0.53 -22.02 4.48 -875.54 -3.92 -25.94 16 10 C 0.19 8.77 1.85 44.17 0.08 8.85 16 11 H 0.03 1.49 6.57 -2.39 -0.02 1.48 16 12 C -0.17 -7.18 7.84 71.98 0.56 -6.61 16 13 C -0.58 -33.32 8.27 25.60 0.21 -33.10 16 14 H 0.02 1.19 7.17 -2.91 -0.02 1.17 16 15 C -0.02 -1.36 5.34 84.66 0.45 -0.91 16 16 N -0.94 -60.15 13.70 21.45 0.29 -59.85 16 17 Si 1.08 49.73 26.24 68.60 1.80 51.53 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.24 -9.33 5.52 99.48 0.55 -8.79 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 C 0.03 0.96 3.49 86.33 0.30 1.26 16 22 H 0.03 1.02 6.72 -2.39 -0.02 1.00 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 24 H 0.06 1.27 6.23 -2.38 -0.01 1.26 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.09 6.58 -2.39 -0.02 1.08 16 27 H 0.40 3.89 9.12 -74.06 -0.68 3.21 16 28 H 0.07 2.11 7.83 -2.38 -0.02 2.09 16 29 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 1.92 7.80 -2.39 -0.02 1.90 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.04 1.99 6.61 -2.39 -0.02 1.98 16 33 H 0.03 1.20 6.55 -2.39 -0.02 1.19 16 34 H 0.05 1.87 6.88 -2.39 -0.02 1.85 16 35 H 0.04 1.79 6.38 -2.39 -0.02 1.77 16 36 H 0.05 2.01 5.06 -2.38 -0.01 2.00 16 37 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 38 H 0.05 1.41 6.91 -2.39 -0.02 1.40 16 39 H 0.07 2.33 6.49 -2.39 -0.02 2.31 16 Total: -1.00 -71.44 289.22 -0.88 -72.32 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.17 Total: 15.96 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.88 Total: -26.21 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.63 Total: -85.79 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -3.11 Total: -27.82 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.80 Total: 51.53 kcal Total: -71.44 -0.88 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401781081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.053 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds