Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48504 * 109.46805 * 270.63037 * 3 2 1 5 5 H 1.48500 * 109.47341 * 30.63135 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.63606 * 3 2 1 7 7 C 1.40040 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00478 * 344.64080 * 7 2 1 9 9 C 1.40029 * 120.00212 * 164.64480 * 7 2 1 10 10 C 1.39608 * 127.02585 * 341.19146 * 9 7 2 11 11 N 1.32995 * 107.61217 * 180.02562 * 10 9 7 12 12 C 1.31198 * 110.01984 * 359.72303 * 11 10 9 13 13 Cl 1.73594 * 125.25241 * 180.27492 * 12 11 10 14 14 N 1.35718 * 109.49741 * 0.45122 * 12 11 10 15 15 C 1.46499 * 126.53459 * 179.81407 * 14 12 11 16 16 C 1.53002 * 109.47617 * 269.69460 * 15 14 12 17 17 C 1.50695 * 109.46838 * 179.97438 * 16 15 14 18 18 O 1.20823 * 120.00738 * 0.02562 * 17 16 15 19 19 O 1.34235 * 119.99512 * 179.97438 * 17 16 15 20 20 H 0.96999 * 120.00245 * 0.02562 * 1 2 3 21 21 H 1.08001 * 126.19913 * 359.97438 * 10 9 7 22 22 H 1.09001 * 109.46993 * 29.69714 * 15 14 12 23 23 H 1.09004 * 109.46752 * 149.68983 * 15 14 12 24 24 H 1.08991 * 109.47019 * 300.00000 * 16 15 14 25 25 H 1.08993 * 109.46742 * 60.00090 * 16 15 14 26 26 H 0.96708 * 116.99593 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4769 2.0541 -1.4001 5 1 1.4470 2.6488 0.7133 6 1 3.5470 1.4364 0.6865 7 6 2.0090 -1.2128 0.0005 8 1 1.4980 -2.1313 0.2487 9 6 3.3718 -1.2346 -0.3206 10 6 4.0913 -0.2499 -1.0000 11 7 5.3511 -0.6655 -1.0951 12 6 5.4819 -1.8377 -0.5206 13 17 6.9609 -2.7399 -0.4100 14 7 4.2817 -2.2380 -0.0295 15 6 4.0028 -3.4897 0.6787 16 6 3.5992 -4.5673 -0.3296 17 6 3.3129 -5.8550 0.3991 18 8 3.4201 -5.9056 1.6015 19 8 2.9377 -6.9456 -0.2877 20 1 -0.4850 0.8400 -0.0004 21 1 3.6963 0.6805 -1.3804 22 1 4.8957 -3.8103 1.2153 23 1 3.1898 -3.3326 1.3877 24 1 2.7062 -4.2467 -0.8661 25 1 4.4122 -4.7244 -1.0383 26 1 2.7647 -7.7482 0.2233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521400745.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = -72.916098 kcal Electronic energy + Delta-G solvation = -15317.557761 eV Core-core repulsion = 12421.928453 eV Total energy + Delta-G solvation = -2895.629308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.29904 -41.24373 -37.62150 -37.26959 -35.73488 -35.60411 -31.96238 -31.21691 -26.51570 -26.15275 -22.76020 -22.36384 -21.08115 -19.49774 -18.93213 -18.17088 -17.41930 -17.22762 -16.61830 -16.04225 -15.64864 -15.26219 -14.78935 -14.30861 -14.03841 -13.78707 -13.50034 -13.01903 -12.90812 -12.60034 -12.48000 -12.29509 -12.22342 -11.79889 -11.68185 -11.29337 -10.69686 -10.44050 -9.27115 -8.94792 -6.51847 0.70388 0.98412 1.11102 1.34833 1.47294 1.56545 1.83830 2.13958 2.22246 2.53730 3.04954 3.60325 3.70532 4.17865 4.29566 4.38389 4.47435 4.73035 4.76014 5.08757 5.27406 5.53790 5.74299 6.10595 6.16338 6.54773 6.70622 6.94133 7.34996 8.11400 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.009502 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.748920 B = 2946.020626 C = 4121.084209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.072 3.928 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.077 0.923 9 C 0.193 3.807 10 C -0.208 4.208 11 N -0.462 5.462 12 C 0.146 3.854 13 Cl 0.017 6.983 14 N -0.481 5.481 15 C 0.132 3.868 16 C -0.126 4.126 17 C 0.503 3.497 18 O -0.544 6.544 19 O -0.507 6.507 20 H 0.300 0.700 21 H 0.152 0.848 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -8.765 0.065 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.148 4.148 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.080 3.920 10 C -0.354 4.354 11 N -0.182 5.182 12 C -0.133 4.133 13 Cl 0.044 6.956 14 N -0.177 5.177 15 C 0.010 3.990 16 C -0.165 4.165 17 C 0.346 3.654 18 O -0.435 6.435 19 O -0.321 6.321 20 H 0.111 0.889 21 H 0.169 0.831 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.129 0.871 25 H 0.140 0.860 26 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 5.358 -8.116 -0.157 9.726 hybrid contribution -0.588 -0.399 0.684 0.987 sum 4.770 -8.515 0.527 9.774 Atomic orbital electron populations 1.69605 1.08538 1.31940 1.35433 1.26309 0.95225 1.03127 0.90111 0.85599 0.78871 0.77087 0.79803 1.18445 1.20210 1.18638 1.18196 0.89856 0.96508 1.44254 0.90534 1.18953 0.90301 0.87260 0.95494 1.22121 0.90190 1.04204 1.18861 1.69134 1.21292 1.08846 1.18977 1.22479 0.83336 0.94593 1.12915 1.98286 1.27788 1.71929 1.97552 1.45093 1.06448 1.17802 1.48343 1.21317 1.03767 0.80561 0.93391 1.21607 1.06168 0.89051 0.99652 1.22907 0.71563 0.85475 0.85479 1.90729 1.50194 1.85439 1.17094 1.84495 1.79313 1.22664 1.45638 0.88904 0.83122 0.87947 0.89312 0.87126 0.85959 0.70637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.53 13.93 21.85 0.30 -41.22 15 2 C 0.07 3.54 5.51 85.27 0.47 4.01 15 3 Si 0.96 41.40 24.53 68.60 1.68 43.08 15 4 H -0.26 -10.79 6.68 99.48 0.66 -10.13 15 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.26 -12.10 6.56 99.48 0.65 -11.44 15 7 C -0.45 -23.02 9.45 23.14 0.22 -22.80 15 8 H 0.08 3.99 7.94 -2.91 -0.02 3.97 15 9 C 0.19 9.41 6.30 38.85 0.24 9.66 15 10 C -0.21 -10.37 9.25 84.85 0.78 -9.58 15 11 N -0.46 -22.47 11.18 -187.27 -2.09 -24.56 15 12 C 0.15 6.26 8.50 179.84 1.53 7.79 15 13 Cl 0.02 0.57 28.75 -2.72 -0.08 0.50 15 14 N -0.48 -20.47 2.82 -507.96 -1.43 -21.90 15 15 C 0.13 4.57 5.10 86.38 0.44 5.01 15 16 C -0.13 -3.60 6.14 29.85 0.18 -3.42 15 17 C 0.50 13.02 8.33 71.23 0.59 13.61 15 18 O -0.54 -16.99 16.74 21.97 0.37 -16.62 15 19 O -0.51 -9.72 13.42 -51.47 -0.69 -10.42 15 20 H 0.30 13.52 8.30 -92.71 -0.77 12.75 15 21 H 0.15 7.37 4.22 -2.91 -0.01 7.36 15 22 H 0.10 3.23 7.75 -2.39 -0.02 3.21 15 23 H 0.09 3.28 7.77 -2.38 -0.02 3.26 15 24 H 0.11 3.38 8.14 -2.39 -0.02 3.36 15 25 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 26 H 0.43 4.08 9.10 -74.05 -0.67 3.41 15 Total: -1.00 -61.30 251.67 3.00 -58.30 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.47 Total: 8.56 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.46 Total: 4.28 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.22 Total: -87.68 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.32 Total: -27.04 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.68 Total: 43.08 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.50 kcal Total: -61.30 3.00 -58.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521400745.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.615 kcal (2) G-P(sol) polarization free energy of solvation -61.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds