Wall clock time and date at job start Mon Mar 30 2020 04:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42098 * 102.99788 * 293.57207 * 9 7 2 11 11 C 1.81402 * 102.99699 * 179.72079 * 9 7 2 12 12 C 1.50699 * 109.46804 * 179.97438 * 11 9 7 13 13 C 1.35168 * 125.60783 * 90.00216 * 12 11 9 14 14 C 1.40314 * 107.12780 * 179.97438 * 13 12 11 15 15 C 1.36637 * 106.70280 * 0.02562 * 14 13 12 16 16 C 1.46464 * 125.99839 * 180.02562 * 15 14 13 17 17 O 1.21623 * 119.99951 * 359.97438 * 16 15 14 18 18 O 1.34902 * 120.00198 * 180.02562 * 16 15 14 19 19 O 1.33916 * 125.61296 * 269.68917 * 12 11 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47263 * 299.99687 * 11 9 7 22 22 H 1.09002 * 109.47511 * 60.00068 * 11 9 7 23 23 H 1.08005 * 126.43952 * 359.97438 * 13 12 11 24 24 H 1.08002 * 126.64915 * 180.02562 * 14 13 12 25 25 H 0.96700 * 116.99549 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4786 -2.7225 1.2599 11 6 2.4501 -3.9572 -0.0118 12 6 1.8484 -5.3388 -0.0174 13 6 1.5339 -6.0558 -1.1193 14 6 1.0032 -7.2780 -0.6795 15 6 1.0202 -7.2447 0.6864 16 6 0.5590 -8.3102 1.5793 17 8 0.1100 -9.3407 1.1151 18 8 0.6313 -8.1480 2.9166 19 8 1.5427 -6.0606 1.0684 20 1 -0.4850 0.8401 -0.0004 21 1 3.0663 -3.8253 -0.9011 22 1 3.0662 -3.8332 0.8788 23 1 1.6663 -5.7462 -2.1455 24 1 0.6498 -8.0880 -1.3002 25 1 0.3145 -8.8787 3.4651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526869102.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:26 Heat of formation + Delta-G solvation = -155.274747 kcal Electronic energy + Delta-G solvation = -14795.359184 eV Core-core repulsion = 11865.909492 eV Total energy + Delta-G solvation = -2929.449692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.028 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.77578 -41.02741 -37.31086 -35.94081 -34.92882 -34.31277 -33.00465 -28.84556 -27.86814 -24.55202 -22.72288 -21.63693 -20.12132 -19.52664 -18.67686 -17.91443 -17.47405 -17.02075 -16.49200 -16.25641 -15.28203 -14.99014 -14.87481 -14.43155 -14.12296 -13.91881 -13.84034 -13.19442 -13.00660 -12.92402 -12.78821 -12.43503 -12.16787 -12.08614 -11.20417 -11.06146 -10.74911 -9.62928 -8.88536 -8.42370 -6.99130 -0.29350 1.04449 1.34608 1.36504 1.42201 1.50973 1.75586 1.87581 2.22697 2.25451 2.77480 3.19957 3.65306 3.85472 3.92533 4.17202 4.41123 4.53121 4.65857 4.93481 4.97689 5.27461 5.38980 5.44463 5.91462 6.07244 6.80852 6.96719 8.40908 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.056073 B = 0.005298 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.227380 B = 5283.704832 C = 5461.184485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.249 1.249 6 H -0.284 1.284 7 C -0.852 4.852 8 H 0.090 0.910 9 S 1.383 4.617 10 O -0.970 6.970 11 C -0.404 4.404 12 C 0.055 3.945 13 C -0.211 4.211 14 C -0.078 4.078 15 C -0.127 4.127 16 C 0.580 3.420 17 O -0.517 6.517 18 O -0.508 6.508 19 O -0.187 6.187 20 H 0.288 0.712 21 H 0.179 0.821 22 H 0.073 0.927 23 H 0.212 0.788 24 H 0.196 0.804 25 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -10.823 -6.056 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.145 4.145 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.173 1.173 6 H -0.210 1.210 7 C -0.993 4.993 8 H 0.109 0.891 9 S 1.584 4.416 10 O -0.965 6.965 11 C -0.534 4.534 12 C 0.001 3.999 13 C -0.231 4.231 14 C -0.098 4.098 15 C -0.176 4.176 16 C 0.426 3.574 17 O -0.410 6.410 18 O -0.323 6.323 19 O -0.084 6.084 20 H 0.098 0.902 21 H 0.197 0.803 22 H 0.092 0.908 23 H 0.229 0.771 24 H 0.213 0.787 25 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 2.304 -10.806 -6.053 12.599 hybrid contribution 1.452 0.784 2.635 3.109 sum 3.756 -10.022 -3.418 11.236 Atomic orbital electron populations 1.69979 1.08095 1.30749 1.43437 1.25774 0.95383 1.03946 0.89434 0.85321 0.79312 0.77017 0.78810 1.18207 1.17250 1.20982 1.27833 1.02753 1.07194 1.61481 0.89131 1.68684 0.83824 0.83862 1.05275 1.92746 1.67741 1.86925 1.49051 1.26966 1.16837 1.00511 1.09078 1.22591 0.99008 0.93528 0.84731 1.22133 1.06431 0.93445 1.01110 1.22422 0.96649 0.99554 0.91130 1.21064 1.14704 0.87522 0.94308 1.18783 0.74071 0.83510 0.81052 1.90948 1.44698 1.27694 1.77621 1.84697 1.78590 1.51260 1.17758 1.84110 1.62474 1.25255 1.36554 0.90232 0.80312 0.90762 0.77117 0.78690 0.69894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.54 13.15 21.45 0.28 -49.26 15 2 C 0.07 3.44 5.46 84.66 0.46 3.90 15 3 Si 0.97 40.23 29.54 68.60 2.03 42.26 15 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 5 H -0.25 -9.27 7.11 99.48 0.71 -8.57 15 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.85 -44.12 9.38 67.74 0.64 -43.49 15 8 H 0.09 4.40 7.81 -2.91 -0.02 4.38 15 9 S 1.38 65.09 12.96 -56.49 -0.73 64.36 15 10 O -0.97 -60.91 17.82 -148.98 -2.66 -63.57 15 11 C -0.40 -14.64 6.41 71.24 0.46 -14.18 15 12 C 0.05 1.91 6.57 24.98 0.16 2.07 15 13 C -0.21 -5.41 10.77 22.07 0.24 -5.17 15 14 C -0.08 -2.04 10.62 22.40 0.24 -1.80 15 15 C -0.13 -4.19 7.18 24.04 0.17 -4.02 15 16 C 0.58 17.48 8.30 69.96 0.58 18.06 15 17 O -0.52 -15.99 17.65 19.43 0.34 -15.65 15 18 O -0.51 -13.23 13.44 -56.78 -0.76 -13.99 15 19 O -0.19 -7.43 10.67 -4.93 -0.05 -7.49 15 20 H 0.29 14.67 8.31 -92.70 -0.77 13.90 15 21 H 0.18 4.69 8.14 -2.39 -0.02 4.67 15 22 H 0.07 2.98 8.14 -2.39 -0.02 2.97 15 23 H 0.21 3.34 8.06 -2.91 -0.02 3.32 15 24 H 0.20 3.71 8.06 -2.91 -0.02 3.68 15 25 H 0.44 5.83 9.11 -74.06 -0.67 5.15 15 Total: -1.00 -81.22 258.90 1.96 -79.26 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.57 Total: 8.70 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 2.95 Total: -44.62 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.28 Total: -49.26 kcal Atomic # 8 Polarization: -97.56 SS G_CDS: -3.13 Total: -100.69 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 65.09 SS G_CDS: -0.73 Total: 64.36 kcal Total: -81.22 1.96 -79.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526869102.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.019 kcal (2) G-P(sol) polarization free energy of solvation -81.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds