Wall clock time and date at job start Mon Mar 30 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00119 * 2 1 4 4 H 1.08996 * 112.85212 * 341.19265 * 3 2 1 5 5 C 1.54051 * 113.69663 * 112.46743 * 3 2 1 6 6 C 1.53787 * 86.98806 * 139.99047 * 5 3 2 7 7 H 1.08993 * 113.61500 * 89.15646 * 6 5 3 8 8 N 1.46899 * 113.61545 * 219.98337 * 6 5 3 9 9 C 1.46902 * 110.99853 * 290.16929 * 8 6 5 10 10 C 1.46898 * 111.00083 * 166.21434 * 8 6 5 11 11 C 1.53004 * 109.47293 * 189.99747 * 10 8 6 12 12 O 1.42904 * 109.47047 * 64.99661 * 11 10 8 13 13 C 1.42891 * 113.99926 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47083 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00073 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00058 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47388 * 90.00155 * 18 16 14 20 20 H 1.48502 * 109.47339 * 210.00466 * 18 16 14 21 21 H 1.48503 * 109.46748 * 330.00621 * 18 16 14 22 22 C 1.53785 * 87.16929 * 334.56830 * 6 5 3 23 23 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46845 * 300.00143 * 1 2 3 25 25 H 1.08996 * 109.47199 * 59.99965 * 1 2 3 26 26 H 1.09001 * 113.61644 * 25.48705 * 5 3 2 27 27 H 1.08996 * 113.69524 * 254.50037 * 5 3 2 28 28 H 1.09003 * 109.47265 * 53.92879 * 9 8 6 29 29 H 1.08998 * 109.47439 * 173.92842 * 9 8 6 30 30 H 1.08995 * 109.46768 * 293.93155 * 9 8 6 31 31 H 1.08994 * 109.47030 * 309.99914 * 10 8 6 32 32 H 1.09002 * 109.47098 * 69.99805 * 10 8 6 33 33 H 1.08994 * 109.47058 * 185.00010 * 11 10 8 34 34 H 1.09001 * 109.46853 * 305.00393 * 11 10 8 35 35 H 1.09007 * 109.47227 * 299.99837 * 13 12 11 36 36 H 1.08993 * 109.47282 * 60.00326 * 13 12 11 37 37 H 0.97005 * 120.00092 * 179.97438 * 17 16 14 38 38 H 1.08998 * 113.61367 * 140.02146 * 22 6 5 39 39 H 1.08999 * 113.61668 * 270.92413 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7545 1.6517 1.3036 6 6 3.8221 2.3199 0.4210 7 1 3.6209 3.3706 0.2123 8 7 5.1974 2.0824 0.8794 9 6 5.4654 2.7989 2.1335 10 6 6.1694 2.4542 -0.1574 11 6 7.5613 1.9666 0.2501 12 8 7.5741 0.5381 0.2857 13 6 8.8346 -0.0227 0.6580 14 6 8.7338 -1.5263 0.6622 15 1 7.8004 -2.0057 0.4065 16 6 9.8329 -2.2900 0.9934 17 7 9.7449 -3.6021 0.9976 18 14 11.4472 -1.4609 1.4363 19 1 11.4904 -1.2112 2.8995 20 1 12.5785 -2.3424 1.0510 21 1 11.5560 -0.1699 0.7105 22 6 3.3756 1.3718 -0.7045 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 3.1190 0.7779 1.8436 27 1 2.2162 2.3515 1.9427 28 1 4.7090 2.5337 2.8723 29 1 6.4510 2.5215 2.5070 30 1 5.4347 3.8732 1.9518 31 1 5.8856 1.9933 -1.1035 32 1 6.1830 3.5382 -0.2708 33 1 8.2960 2.3187 -0.4739 34 1 7.8082 2.3568 1.2375 35 1 9.5961 0.2881 -0.0574 36 1 9.1076 0.3262 1.6538 37 1 10.5183 -4.1395 1.2302 38 1 3.3382 1.8456 -1.6854 39 1 3.9095 0.4215 -0.7125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550096392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:13 Heat of formation + Delta-G solvation = -59.964746 kcal Electronic energy + Delta-G solvation = -17870.706740 eV Core-core repulsion = 15007.855075 eV Total energy + Delta-G solvation = -2862.851665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72042 -37.53824 -36.41431 -34.37623 -32.51314 -29.47805 -27.49534 -27.07602 -26.14590 -25.15578 -22.94114 -21.74963 -20.80307 -19.47683 -17.09252 -16.76874 -15.97887 -15.68689 -15.42558 -15.18781 -14.81959 -14.46005 -13.92147 -13.87532 -13.63682 -12.68863 -12.41786 -12.30119 -12.16286 -12.09996 -11.77721 -11.69507 -11.31651 -11.05959 -10.89614 -10.78833 -10.70451 -10.43589 -10.20214 -9.78941 -9.47728 -9.07931 -8.74451 -8.36380 -8.08616 -6.03644 -4.01646 3.29350 3.35919 3.37671 3.66943 4.20821 4.41922 4.49254 4.65804 4.72408 4.79113 4.81278 5.13545 5.25191 5.27312 5.27523 5.38704 5.48450 5.53204 5.64689 5.66384 5.67848 5.81318 5.87598 5.95878 6.08749 6.12712 6.20328 6.24727 6.33236 6.68541 7.08417 7.21942 7.24740 7.33128 7.68836 8.14627 8.77726 9.10572 9.56267 11.09633 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.004853 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.451210 B = 5768.647405 C = 6465.966790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.061 3.939 4 H 0.082 0.918 5 C -0.141 4.141 6 C 0.055 3.945 7 H 0.060 0.940 8 N -0.513 5.513 9 C 0.025 3.975 10 C 0.061 3.939 11 C 0.062 3.938 12 O -0.363 6.363 13 C 0.168 3.832 14 C -0.513 4.513 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.124 4.124 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.037 0.963 35 H -0.001 1.001 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 15.374 -1.080 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.002 3.998 4 H 0.100 0.900 5 C -0.179 4.179 6 C -0.054 4.054 7 H 0.077 0.923 8 N -0.237 5.237 9 C -0.123 4.123 10 C -0.067 4.067 11 C -0.016 4.016 12 O -0.282 6.282 13 C 0.092 3.908 14 C -0.551 4.551 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.162 4.162 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.682 14.411 -1.001 20.597 hybrid contribution 0.917 1.660 0.238 1.911 sum -13.765 16.071 -0.763 21.174 Atomic orbital electron populations 1.22766 0.81719 1.02667 0.99507 1.88032 1.19121 1.27209 1.94522 1.23609 0.93800 0.85032 0.97343 0.89970 1.23575 0.96054 1.01426 0.96806 1.22813 0.88874 0.96414 0.97300 0.92259 1.62060 1.00814 1.57106 1.03698 1.22383 1.02850 0.94695 0.92414 1.22115 0.92006 0.96778 0.95800 1.22341 0.94918 0.85587 0.98782 1.88019 1.34734 1.15667 1.89780 1.20574 0.82007 0.95280 0.92910 1.20913 0.99803 0.88004 1.46422 0.89861 1.24765 0.98419 0.94708 0.95119 1.69885 1.30688 1.04102 1.48913 0.86865 0.83820 0.79843 0.79275 1.20018 1.20868 1.19193 1.23288 0.94670 1.01577 0.96629 0.89758 0.94296 0.94317 0.87860 0.91895 0.91544 0.90862 0.96399 0.89895 0.94444 0.94261 0.94455 0.98309 0.98683 0.92480 0.91448 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.96 10.72 -35.23 -0.38 -5.34 16 3 C 0.06 0.70 4.31 -25.77 -0.11 0.59 16 4 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 5 C -0.14 -1.69 6.92 -25.77 -0.18 -1.87 16 6 C 0.05 0.68 3.16 -66.90 -0.21 0.47 16 7 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 8 N -0.51 -7.78 4.65 -233.90 -1.09 -8.87 16 9 C 0.02 0.33 9.22 60.07 0.55 0.88 16 10 C 0.06 0.91 5.28 -3.82 -0.02 0.89 16 11 C 0.06 1.12 5.99 37.16 0.22 1.34 16 12 O -0.36 -8.80 10.27 -35.23 -0.36 -9.16 16 13 C 0.17 4.41 4.76 36.00 0.17 4.58 16 14 C -0.51 -15.76 9.99 -34.44 -0.34 -16.10 16 15 H 0.08 2.81 8.06 -52.48 -0.42 2.39 16 16 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 18 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 C -0.12 -1.60 6.78 -25.91 -0.18 -1.77 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 29 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 30 H 0.02 0.20 8.12 -51.93 -0.42 -0.22 16 31 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 32 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.64 6.38 -51.93 -0.33 0.31 16 35 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 36 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 37 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -33.60 316.73 -6.89 -40.49 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -6.85 Total: -4.00 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 0.91 Total: -7.56 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.31 Total: -36.44 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.74 Total: -14.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.60 -6.89 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550096392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.473 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds