Wall clock time and date at job start Mon Mar 30 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00119 * 2 1 4 4 H 1.08996 * 112.85212 * 341.19265 * 3 2 1 5 5 C 1.54051 * 113.69663 * 112.46743 * 3 2 1 6 6 C 1.53787 * 86.98806 * 139.99047 * 5 3 2 7 7 H 1.08993 * 113.61500 * 89.15646 * 6 5 3 8 8 N 1.46899 * 113.61545 * 219.98337 * 6 5 3 9 9 C 1.46902 * 110.99853 * 290.16929 * 8 6 5 10 10 C 1.46898 * 111.00083 * 166.21434 * 8 6 5 11 11 C 1.53004 * 109.47293 * 189.99747 * 10 8 6 12 12 O 1.42904 * 109.47047 * 64.99661 * 11 10 8 13 13 C 1.42891 * 113.99926 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47083 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00073 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00058 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47388 * 90.00155 * 18 16 14 20 20 H 1.48502 * 109.47339 * 210.00466 * 18 16 14 21 21 H 1.48503 * 109.46748 * 330.00621 * 18 16 14 22 22 C 1.53785 * 87.16929 * 334.56830 * 6 5 3 23 23 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46845 * 300.00143 * 1 2 3 25 25 H 1.08996 * 109.47199 * 59.99965 * 1 2 3 26 26 H 1.09001 * 113.61644 * 25.48705 * 5 3 2 27 27 H 1.08996 * 113.69524 * 254.50037 * 5 3 2 28 28 H 1.09003 * 109.47265 * 53.92879 * 9 8 6 29 29 H 1.08998 * 109.47439 * 173.92842 * 9 8 6 30 30 H 1.08995 * 109.46768 * 293.93155 * 9 8 6 31 31 H 1.08994 * 109.47030 * 309.99914 * 10 8 6 32 32 H 1.09002 * 109.47098 * 69.99805 * 10 8 6 33 33 H 1.08994 * 109.47058 * 185.00010 * 11 10 8 34 34 H 1.09001 * 109.46853 * 305.00393 * 11 10 8 35 35 H 1.09007 * 109.47227 * 299.99837 * 13 12 11 36 36 H 1.08993 * 109.47282 * 60.00326 * 13 12 11 37 37 H 0.97005 * 120.00092 * 179.97438 * 17 16 14 38 38 H 1.08998 * 113.61367 * 140.02146 * 22 6 5 39 39 H 1.08999 * 113.61668 * 270.92413 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7545 1.6517 1.3036 6 6 3.8221 2.3199 0.4210 7 1 3.6209 3.3706 0.2123 8 7 5.1974 2.0824 0.8794 9 6 5.4654 2.7989 2.1335 10 6 6.1694 2.4542 -0.1574 11 6 7.5613 1.9666 0.2501 12 8 7.5741 0.5381 0.2857 13 6 8.8346 -0.0227 0.6580 14 6 8.7338 -1.5263 0.6622 15 1 7.8004 -2.0057 0.4065 16 6 9.8329 -2.2900 0.9934 17 7 9.7449 -3.6021 0.9976 18 14 11.4472 -1.4609 1.4363 19 1 11.4904 -1.2112 2.8995 20 1 12.5785 -2.3424 1.0510 21 1 11.5560 -0.1699 0.7105 22 6 3.3756 1.3718 -0.7045 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 3.1190 0.7779 1.8436 27 1 2.2162 2.3515 1.9427 28 1 4.7090 2.5337 2.8723 29 1 6.4510 2.5215 2.5070 30 1 5.4347 3.8732 1.9518 31 1 5.8856 1.9933 -1.1035 32 1 6.1830 3.5382 -0.2708 33 1 8.2960 2.3187 -0.4739 34 1 7.8082 2.3568 1.2375 35 1 9.5961 0.2881 -0.0574 36 1 9.1076 0.3262 1.6538 37 1 10.5183 -4.1395 1.2302 38 1 3.3382 1.8456 -1.6854 39 1 3.9095 0.4215 -0.7125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550096392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:13 Heat of formation + Delta-G solvation = -85.563387 kcal Electronic energy + Delta-G solvation = -17871.816780 eV Core-core repulsion = 15007.855075 eV Total energy + Delta-G solvation = -2863.961706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69888 -38.90599 -37.76570 -35.55632 -34.74320 -31.06379 -29.33497 -27.91489 -27.22006 -26.13258 -24.10613 -23.86189 -21.99870 -20.45700 -19.02463 -18.08489 -17.42767 -17.01517 -16.59523 -16.41838 -16.05442 -15.96100 -15.33152 -15.12947 -14.76149 -14.57625 -14.00119 -13.63220 -13.36355 -13.18042 -12.93484 -12.82221 -12.66787 -12.62453 -12.38471 -12.16774 -11.85158 -11.80533 -11.54297 -11.36647 -11.23847 -10.90771 -10.37142 -10.27038 -9.12374 -8.35988 -6.43766 1.32542 1.36551 1.47476 2.30246 2.76807 2.96266 3.13043 3.26292 3.55105 3.73325 3.83716 3.95778 4.17133 4.28112 4.35019 4.50358 4.52732 4.53789 4.56441 4.59222 4.65270 4.70343 4.74555 4.87087 4.87457 4.95069 5.03419 5.06126 5.08732 5.20204 5.31671 5.45953 5.95763 6.19566 6.30877 6.41284 6.60835 6.83641 7.21127 8.81724 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.004853 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.451210 B = 5768.647405 C = 6465.966790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.067 3.933 4 H 0.118 0.882 5 C -0.140 4.140 6 C 0.061 3.939 7 H 0.091 0.909 8 N -0.550 5.550 9 C 0.028 3.972 10 C 0.067 3.933 11 C 0.051 3.949 12 O -0.394 6.394 13 C 0.180 3.820 14 C -0.544 4.544 15 H 0.025 0.975 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.245 1.245 22 C -0.132 4.132 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.007 0.993 37 H 0.273 0.727 38 H 0.085 0.915 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 18.662 -0.843 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.178 4.178 6 C -0.047 4.047 7 H 0.109 0.891 8 N -0.275 5.275 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.026 4.026 12 O -0.314 6.314 13 C 0.104 3.896 14 C -0.582 4.582 15 H 0.043 0.957 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.780 3.220 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.168 1.168 22 C -0.170 4.170 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.399 17.715 -0.769 22.842 hybrid contribution 0.680 0.571 0.133 0.898 sum -13.719 18.286 -0.636 22.869 Atomic orbital electron populations 1.22968 0.79694 1.03524 1.01029 1.87991 1.21557 1.28616 1.94676 1.23722 0.93650 0.85294 0.96435 0.86439 1.23493 0.96422 1.00613 0.97244 1.22888 0.87428 0.97679 0.96662 0.89137 1.61969 1.02189 1.58817 1.04521 1.22341 1.01940 0.96012 0.91704 1.22052 0.90231 0.98571 0.95198 1.22734 0.97656 0.82111 1.00072 1.87979 1.33783 1.19709 1.89900 1.20268 0.83277 0.92383 0.93662 1.21176 0.98201 0.91032 1.47763 0.95668 1.25880 1.03233 0.95311 0.94182 1.70050 1.32588 1.06251 1.49520 0.85566 0.77248 0.79414 0.79816 1.18411 1.19682 1.16831 1.23241 0.95660 0.99832 0.98265 0.89439 0.92906 0.92518 0.91472 0.89243 0.91134 0.92681 0.93771 0.90922 0.90722 0.92590 0.93357 0.97182 0.97574 0.91819 0.89614 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.85 113.37 1.23 1.64 16 2 O -0.41 -11.00 10.72 -148.98 -1.60 -12.59 16 3 C 0.07 1.47 4.31 31.21 0.13 1.60 16 4 H 0.12 1.73 7.87 -2.39 -0.02 1.72 16 5 C -0.14 -3.22 6.92 31.21 0.22 -3.01 16 6 C 0.06 1.43 3.16 45.45 0.14 1.57 16 7 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 8 N -0.55 -16.22 4.65 -893.94 -4.16 -20.38 16 9 C 0.03 0.69 9.22 127.69 1.18 1.87 16 10 C 0.07 1.91 5.28 86.30 0.46 2.36 16 11 C 0.05 1.80 5.99 71.98 0.43 2.23 16 12 O -0.39 -19.47 10.27 -148.98 -1.53 -21.00 16 13 C 0.18 9.49 4.76 71.23 0.34 9.82 16 14 C -0.54 -34.78 9.99 25.60 0.26 -34.53 16 15 H 0.02 1.83 8.06 -2.91 -0.02 1.80 16 16 C 0.01 0.70 5.47 84.65 0.46 1.17 16 17 N -0.94 -61.47 13.96 21.45 0.30 -61.17 16 18 Si 0.96 44.69 27.47 68.60 1.88 46.57 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 22 C -0.13 -3.39 6.78 31.12 0.21 -3.18 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.65 7.48 -2.39 -0.02 1.63 16 29 H 0.05 1.54 6.47 -2.39 -0.02 1.52 16 30 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 2.19 7.34 -2.39 -0.02 2.17 16 32 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.58 6.38 -2.39 -0.02 1.57 16 35 H 0.01 0.52 7.20 -2.38 -0.02 0.51 16 36 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 37 H 0.27 16.21 8.31 -92.70 -0.77 15.44 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.18 316.73 0.89 -76.28 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.94 Total: 10.74 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.06 Total: -18.45 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.86 Total: -81.55 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -3.13 Total: -33.59 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -77.18 0.89 -76.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550096392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.281 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds