Wall clock time and date at job start Mon Mar 30 2020 04:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00904 * 2 1 4 4 C 1.52997 * 109.47603 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99922 * 4 3 2 6 6 O 1.42896 * 109.46906 * 295.00204 * 4 3 2 7 7 C 1.53000 * 109.47060 * 175.00241 * 4 3 2 8 8 N 1.46901 * 109.46818 * 185.00277 * 7 4 3 9 9 C 1.46902 * 111.00023 * 179.97438 * 8 7 4 10 10 H 1.09001 * 110.43559 * 325.70022 * 9 8 7 11 11 C 1.54267 * 110.48534 * 88.23610 * 9 8 7 12 12 C 1.54085 * 106.49255 * 142.19719 * 11 9 8 13 13 C 1.54268 * 106.62230 * 0.17411 * 12 11 9 14 14 H 1.09007 * 110.59700 * 95.01424 * 13 12 11 15 15 C 1.50698 * 110.48800 * 217.59757 * 13 12 11 16 16 H 1.08006 * 119.99669 * 114.77882 * 15 13 12 17 17 C 1.37867 * 120.00360 * 294.77583 * 15 13 12 18 18 N 1.31521 * 120.00192 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00186 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47009 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47229 * 120.00176 * 19 17 15 22 22 H 1.48498 * 109.47380 * 240.00162 * 19 17 15 23 23 C 1.54885 * 104.19393 * 336.27836 * 13 12 11 24 24 H 1.08997 * 109.47032 * 59.99249 * 1 2 3 25 25 H 1.08993 * 109.47589 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46594 * 300.00378 * 1 2 3 27 27 H 1.09000 * 109.46724 * 59.99822 * 3 2 1 28 28 H 1.09008 * 109.47064 * 300.00252 * 3 2 1 29 29 H 0.96708 * 114.00101 * 299.99268 * 6 4 3 30 30 H 1.09002 * 109.47069 * 304.99600 * 7 4 3 31 31 H 1.08991 * 109.47625 * 64.99919 * 7 4 3 32 32 H 1.00901 * 111.00083 * 303.94749 * 8 7 4 33 33 H 1.09000 * 110.03861 * 261.57118 * 11 9 8 34 34 H 1.09005 * 110.03563 * 23.01080 * 11 9 8 35 35 H 1.08995 * 110.11622 * 240.83292 * 12 11 9 36 36 H 1.09002 * 109.96900 * 119.43900 * 12 11 9 37 37 H 0.96998 * 120.00313 * 179.97438 * 18 17 15 38 38 H 1.08993 * 110.75803 * 279.62236 * 23 13 12 39 39 H 1.09001 * 110.91480 * 156.32737 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1844 -0.0006 5 1 3.8509 0.5682 -0.8427 6 8 3.9659 0.5789 1.2201 7 6 4.1575 2.5766 -0.1263 8 7 5.6162 2.4521 -0.2474 9 6 6.2488 3.7722 -0.3709 10 1 5.6046 4.4523 -0.9283 11 6 6.5669 4.3510 1.0232 12 6 7.9194 5.0784 0.8967 13 6 8.3708 4.9187 -0.5698 14 1 8.0719 5.7853 -1.1596 15 6 9.8630 4.7213 -0.6439 16 1 10.2668 3.7861 -1.0029 17 6 10.7126 5.7344 -0.2535 18 7 10.2210 6.8734 0.1832 19 14 12.5623 5.4894 -0.3446 20 1 12.8565 4.1307 -0.8666 21 1 13.1522 6.5062 -1.2520 22 1 13.1486 5.6367 1.0118 23 6 7.6310 3.6488 -1.0588 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6888 1.8462 0.8900 28 1 1.6888 1.8463 -0.8900 29 1 3.7193 1.0743 2.0132 30 1 3.7606 3.0733 -1.0117 31 1 3.9152 3.1641 0.7592 32 1 6.0011 1.9379 0.5307 33 1 5.7891 5.0536 1.3223 34 1 6.6438 3.5453 1.7534 35 1 8.6524 4.6257 1.5643 36 1 7.7980 6.1346 1.1371 37 1 10.8187 7.5860 0.4582 38 1 8.1485 2.7486 -0.7274 39 1 7.5244 3.6540 -2.1435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567697868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:19 Heat of formation + Delta-G solvation = -114.965934 kcal Electronic energy + Delta-G solvation = -17698.609556 eV Core-core repulsion = 14833.372860 eV Total energy + Delta-G solvation = -2865.236696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.94573 -37.78496 -36.64435 -33.97919 -32.08031 -30.32131 -28.03088 -27.43231 -26.17929 -24.26521 -23.12925 -21.74333 -19.59081 -19.01111 -17.16381 -16.71365 -16.33929 -16.24677 -15.40345 -15.11961 -14.73483 -14.53808 -14.02445 -13.64780 -13.12361 -12.88115 -12.42014 -12.32638 -12.08977 -11.84582 -11.58522 -11.11871 -10.98363 -10.88562 -10.65497 -10.50263 -10.26578 -10.01832 -9.96571 -9.81212 -9.52139 -9.06961 -8.68756 -8.34299 -7.98362 -5.96771 -3.98647 3.32633 3.33920 3.40741 3.45508 4.28567 4.43624 4.50539 4.83694 4.87589 5.00650 5.03370 5.09943 5.17679 5.26013 5.35598 5.36556 5.51499 5.66109 5.67633 5.89138 5.99399 6.23592 6.49038 6.67313 6.75827 6.83629 6.87629 7.06397 7.16485 7.37484 7.51116 7.55318 7.74289 7.75311 7.94876 8.07245 8.52666 9.05241 9.65328 11.13234 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.067790 B = 0.003674 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.944045 B = 7618.693282 C = 7715.997898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.030 3.970 4 C 0.110 3.890 5 H 0.115 0.885 6 O -0.550 6.550 7 C 0.031 3.969 8 N -0.678 5.678 9 C 0.080 3.920 10 H 0.070 0.930 11 C -0.152 4.152 12 C -0.095 4.095 13 C 0.046 3.954 14 H 0.029 0.971 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.099 4.099 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.369 0.631 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.346 0.654 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.258 0.742 38 H 0.059 0.941 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -8.212 1.403 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.047 4.047 4 C 0.050 3.950 5 H 0.133 0.867 6 O -0.355 6.355 7 C -0.099 4.099 8 N -0.309 5.309 9 C -0.029 4.029 10 H 0.088 0.912 11 C -0.192 4.192 12 C -0.133 4.133 13 C 0.028 3.972 14 H 0.047 0.953 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.215 0.785 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.166 0.834 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.184 -8.771 0.373 19.296 hybrid contribution 0.359 1.157 1.345 1.810 sum -16.825 -7.614 1.718 18.547 Atomic orbital electron populations 1.22760 0.81279 1.02786 0.99840 1.87962 1.19381 1.27280 1.95342 1.23296 0.95333 0.85275 1.00833 1.22023 0.89474 0.94683 0.88772 0.86727 1.86666 1.80883 1.52666 1.15240 1.22520 0.91050 0.95424 1.00910 1.60588 1.01882 1.18672 1.49791 1.22594 0.96703 0.87712 0.95940 0.91159 1.22982 0.99959 0.99502 0.96737 1.22074 0.92044 0.98495 1.00708 1.19459 0.94362 0.91923 0.91503 0.95275 1.21219 0.90881 0.99926 1.42713 0.92551 1.24996 0.98549 0.95243 0.95335 1.69985 1.34491 1.04476 1.44143 0.86597 0.86035 0.78180 0.77561 1.19742 1.21135 1.21160 1.22533 0.92566 1.00594 0.98067 0.94124 0.89576 0.94213 0.93134 0.92291 0.78460 0.90335 0.95162 0.83438 0.93937 0.93326 0.93076 0.92987 0.93253 0.92225 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.26 10.67 -40.09 -0.43 -4.69 16 3 C 0.03 0.29 5.57 37.16 0.21 0.49 16 4 C 0.11 1.24 3.49 -26.73 -0.09 1.14 16 5 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 6 O -0.55 -6.67 12.82 -40.09 -0.51 -7.18 16 7 C 0.03 0.37 5.21 -3.82 -0.02 0.35 16 8 N -0.68 -10.28 6.35 -104.98 -0.67 -10.95 16 9 C 0.08 1.41 3.17 -66.05 -0.21 1.20 16 10 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 11 C -0.15 -2.80 6.49 -25.50 -0.17 -2.97 16 12 C -0.09 -2.20 5.61 -25.50 -0.14 -2.34 16 13 C 0.05 1.16 2.72 -90.11 -0.25 0.91 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.51 -14.12 8.36 -34.44 -0.29 -14.41 16 16 H 0.06 1.56 7.77 -52.48 -0.41 1.15 16 17 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 18 N -0.89 -25.91 12.63 55.43 0.70 -25.21 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.10 -2.09 5.97 -24.74 -0.15 -2.24 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.37 3.18 9.05 45.56 0.41 3.59 16 30 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.35 5.33 7.67 -39.29 -0.30 5.03 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.84 7.55 -51.93 -0.39 0.45 16 35 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 36 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -30.44 317.88 -7.35 -37.79 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.12 Total: 3.87 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.09 Total: -14.93 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.03 Total: -36.16 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.94 Total: -11.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.44 -7.35 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567697868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.180 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds