Wall clock time and date at job start Mon Mar 30 2020 04:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00904 * 2 1 4 4 C 1.52997 * 109.47603 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99922 * 4 3 2 6 6 O 1.42896 * 109.46906 * 295.00204 * 4 3 2 7 7 C 1.53000 * 109.47060 * 175.00241 * 4 3 2 8 8 N 1.46901 * 109.46818 * 185.00277 * 7 4 3 9 9 C 1.46902 * 111.00023 * 179.97438 * 8 7 4 10 10 H 1.09001 * 110.43559 * 325.70022 * 9 8 7 11 11 C 1.54267 * 110.48534 * 88.23610 * 9 8 7 12 12 C 1.54085 * 106.49255 * 142.19719 * 11 9 8 13 13 C 1.54268 * 106.62230 * 0.17411 * 12 11 9 14 14 H 1.09007 * 110.59700 * 95.01424 * 13 12 11 15 15 C 1.50698 * 110.48800 * 217.59757 * 13 12 11 16 16 H 1.08006 * 119.99669 * 114.77882 * 15 13 12 17 17 C 1.37867 * 120.00360 * 294.77583 * 15 13 12 18 18 N 1.31521 * 120.00192 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00186 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47009 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47229 * 120.00176 * 19 17 15 22 22 H 1.48498 * 109.47380 * 240.00162 * 19 17 15 23 23 C 1.54885 * 104.19393 * 336.27836 * 13 12 11 24 24 H 1.08997 * 109.47032 * 59.99249 * 1 2 3 25 25 H 1.08993 * 109.47589 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46594 * 300.00378 * 1 2 3 27 27 H 1.09000 * 109.46724 * 59.99822 * 3 2 1 28 28 H 1.09008 * 109.47064 * 300.00252 * 3 2 1 29 29 H 0.96708 * 114.00101 * 299.99268 * 6 4 3 30 30 H 1.09002 * 109.47069 * 304.99600 * 7 4 3 31 31 H 1.08991 * 109.47625 * 64.99919 * 7 4 3 32 32 H 1.00901 * 111.00083 * 303.94749 * 8 7 4 33 33 H 1.09000 * 110.03861 * 261.57118 * 11 9 8 34 34 H 1.09005 * 110.03563 * 23.01080 * 11 9 8 35 35 H 1.08995 * 110.11622 * 240.83292 * 12 11 9 36 36 H 1.09002 * 109.96900 * 119.43900 * 12 11 9 37 37 H 0.96998 * 120.00313 * 179.97438 * 18 17 15 38 38 H 1.08993 * 110.75803 * 279.62236 * 23 13 12 39 39 H 1.09001 * 110.91480 * 156.32737 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1844 -0.0006 5 1 3.8509 0.5682 -0.8427 6 8 3.9659 0.5789 1.2201 7 6 4.1575 2.5766 -0.1263 8 7 5.6162 2.4521 -0.2474 9 6 6.2488 3.7722 -0.3709 10 1 5.6046 4.4523 -0.9283 11 6 6.5669 4.3510 1.0232 12 6 7.9194 5.0784 0.8967 13 6 8.3708 4.9187 -0.5698 14 1 8.0719 5.7853 -1.1596 15 6 9.8630 4.7213 -0.6439 16 1 10.2668 3.7861 -1.0029 17 6 10.7126 5.7344 -0.2535 18 7 10.2210 6.8734 0.1832 19 14 12.5623 5.4894 -0.3446 20 1 12.8565 4.1307 -0.8666 21 1 13.1522 6.5062 -1.2520 22 1 13.1486 5.6367 1.0118 23 6 7.6310 3.6488 -1.0588 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6888 1.8462 0.8900 28 1 1.6888 1.8463 -0.8900 29 1 3.7193 1.0743 2.0132 30 1 3.7606 3.0733 -1.0117 31 1 3.9152 3.1641 0.7592 32 1 6.0011 1.9379 0.5307 33 1 5.7891 5.0536 1.3223 34 1 6.6438 3.5453 1.7534 35 1 8.6524 4.6257 1.5643 36 1 7.7980 6.1346 1.1371 37 1 10.8187 7.5860 0.4582 38 1 8.1485 2.7486 -0.7274 39 1 7.5244 3.6540 -2.1435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567697868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:19 Heat of formation + Delta-G solvation = -138.173164 kcal Electronic energy + Delta-G solvation = -17699.615897 eV Core-core repulsion = 14833.372860 eV Total energy + Delta-G solvation = -2866.243037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92455 -39.07179 -37.61250 -35.49518 -33.87835 -31.35592 -29.79923 -28.63619 -27.25594 -25.76558 -24.50315 -22.64013 -21.08368 -20.91917 -18.34639 -18.05280 -17.48511 -16.98550 -16.63683 -16.55497 -16.14364 -15.81729 -15.19065 -14.96952 -14.43088 -14.13451 -13.87203 -13.65779 -13.32683 -13.06545 -12.94903 -12.67237 -12.46595 -12.33609 -12.29404 -11.90714 -11.72498 -11.57932 -11.36887 -11.14727 -10.77640 -10.74452 -10.64234 -10.47777 -9.21895 -8.11823 -6.20704 1.39486 1.41410 1.53226 2.43763 2.60318 3.18960 3.41100 3.53741 3.97713 4.03958 4.07838 4.12245 4.18302 4.29241 4.42551 4.47816 4.55516 4.57994 4.70303 4.73541 4.86224 4.86603 5.03309 5.05196 5.12815 5.18996 5.25209 5.44845 5.46093 5.66797 5.93126 5.99696 6.17063 6.25061 6.42384 6.53812 6.85537 6.91141 7.46656 8.97564 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.067790 B = 0.003674 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.944045 B = 7618.693282 C = 7715.997898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.033 3.967 4 C 0.116 3.884 5 H 0.095 0.905 6 O -0.570 6.570 7 C 0.035 3.965 8 N -0.683 5.683 9 C 0.096 3.904 10 H 0.080 0.920 11 C -0.139 4.139 12 C -0.087 4.087 13 C 0.037 3.963 14 H -0.001 1.001 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.093 4.093 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.384 0.616 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.346 0.654 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.894 -8.883 1.706 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.044 4.044 4 C 0.057 3.943 5 H 0.113 0.887 6 O -0.376 6.376 7 C -0.095 4.095 8 N -0.314 5.314 9 C -0.014 4.014 10 H 0.098 0.902 11 C -0.179 4.179 12 C -0.126 4.126 13 C 0.018 3.982 14 H 0.018 0.982 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.531 -9.451 0.678 20.813 hybrid contribution 0.745 1.352 1.242 1.981 sum -17.787 -8.099 1.920 19.638 Atomic orbital electron populations 1.22934 0.79575 1.03726 1.00911 1.87909 1.21346 1.28313 1.95599 1.23261 0.93785 0.85047 1.02297 1.21869 0.90843 0.93625 0.87983 0.88750 1.86627 1.81300 1.53543 1.16167 1.22564 0.88654 0.96217 1.02065 1.60467 1.03925 1.16880 1.50118 1.22298 0.95079 0.89144 0.94864 0.90214 1.22861 0.97305 0.99842 0.97843 1.21860 0.94425 0.97423 0.98864 1.19450 0.93656 0.92689 0.92431 0.98249 1.21585 0.92749 0.99786 1.42601 0.93104 1.25770 1.03034 0.95011 0.95058 1.70100 1.35969 1.05158 1.44889 0.85592 0.80651 0.78285 0.77677 1.19154 1.20606 1.20650 1.22369 0.94369 0.98006 0.98362 0.93059 0.88855 0.93075 0.91389 0.91013 0.76742 0.89437 0.93560 0.83475 0.91866 0.91802 0.95475 0.95416 0.93175 0.93061 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.44 10.67 -144.34 -1.54 -9.98 16 3 C 0.03 0.54 5.57 71.98 0.40 0.94 16 4 C 0.12 2.37 3.49 30.59 0.11 2.47 16 5 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 6 O -0.57 -12.67 12.82 -144.34 -1.85 -14.52 16 7 C 0.03 0.72 5.21 86.30 0.45 1.17 16 8 N -0.68 -19.20 6.35 -486.03 -3.08 -22.28 16 9 C 0.10 3.22 3.17 45.99 0.15 3.36 16 10 H 0.08 2.56 7.85 -2.39 -0.02 2.54 16 11 C -0.14 -4.88 6.49 31.39 0.20 -4.67 16 12 C -0.09 -4.10 5.61 31.39 0.18 -3.92 16 13 C 0.04 1.87 2.72 -10.47 -0.03 1.84 16 14 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 15 C -0.53 -29.96 8.36 25.60 0.21 -29.75 16 16 H 0.05 2.86 7.77 -2.91 -0.02 2.83 16 17 C 0.01 0.54 5.35 84.65 0.45 1.00 16 18 N -0.92 -54.63 12.63 21.44 0.27 -54.36 16 19 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 C -0.09 -3.89 5.97 31.88 0.19 -3.70 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.38 5.65 9.05 -74.05 -0.67 4.98 16 30 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.35 9.91 7.67 -89.69 -0.69 9.22 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.06 7.55 -2.38 -0.02 2.04 16 35 H 0.03 1.36 7.83 -2.39 -0.02 1.34 16 36 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.05 2.21 8.05 -2.39 -0.02 2.19 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.12 317.88 -0.96 -67.08 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.34 Total: 17.09 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 3.56 Total: -29.69 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -2.81 Total: -76.64 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -3.39 Total: -24.50 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.12 -0.96 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567697868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.098 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds