Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34884 * 116.99651 * 2 1 4 4 O 1.21602 * 120.00061 * 0.28252 * 3 2 1 5 5 C 1.46597 * 119.99777 * 179.97438 * 3 2 1 6 6 C 1.38348 * 126.54861 * 180.02562 * 5 3 2 7 7 Cl 1.73596 * 126.18252 * 359.96158 * 6 5 3 8 8 C 1.39582 * 107.63855 * 179.97438 * 6 5 3 9 9 C 1.50694 * 125.54332 * 179.97438 * 8 6 5 10 10 N 1.31056 * 108.90534 * 0.02562 * 8 6 5 11 11 N 1.37596 * 126.55097 * 359.72092 * 5 3 2 12 12 C 1.36908 * 126.17903 * 0.02562 * 11 5 3 13 13 H 1.08006 * 120.00254 * 353.30310 * 12 11 5 14 14 C 1.39268 * 120.00300 * 173.30389 * 12 11 5 15 15 N 1.31114 * 119.99482 * 5.70180 * 14 12 11 16 16 Si 1.86801 * 120.00277 * 185.70586 * 14 12 11 17 17 H 1.48499 * 109.47073 * 94.98229 * 16 14 12 18 18 H 1.48495 * 109.46991 * 214.98341 * 16 14 12 19 19 H 1.48498 * 109.47033 * 334.98005 * 16 14 12 20 20 H 1.09000 * 109.47373 * 299.99188 * 1 2 3 21 21 H 1.08997 * 109.47196 * 60.00004 * 1 2 3 22 22 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47079 * 90.00276 * 9 8 6 24 24 H 1.09001 * 109.47238 * 210.00100 * 9 8 6 25 25 H 1.08997 * 109.47486 * 330.00239 * 9 8 6 26 26 H 0.97003 * 119.99924 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4020 2.2217 0.0052 5 6 3.5283 1.2786 0.0006 6 6 4.2928 2.4316 0.0011 7 17 3.6914 4.0601 0.0004 8 6 5.6352 2.0490 0.0021 9 6 6.8137 2.9881 0.0025 10 7 5.7037 0.7403 0.0016 11 7 4.4045 0.2177 0.0065 12 6 4.0670 -1.1091 0.0125 13 1 3.0335 -1.4031 0.1220 14 6 5.0564 -2.0799 -0.1225 15 7 6.3198 -1.7299 -0.1429 16 14 4.5835 -3.8807 -0.2745 17 1 4.5166 -4.2554 -1.7099 18 1 5.6009 -4.7190 0.4090 19 1 3.2571 -4.0991 0.3565 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 7.0973 3.2149 1.0302 24 1 7.6528 2.5183 -0.5106 25 1 6.5437 3.9104 -0.5119 26 1 7.0089 -2.4060 -0.2373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575602546.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -40.640572 kcal Electronic energy + Delta-G solvation = -15615.781997 eV Core-core repulsion = 12721.552261 eV Total energy + Delta-G solvation = -2894.229736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.84574 -40.62600 -37.38687 -36.98437 -35.88041 -33.65459 -30.81211 -29.81125 -28.43937 -26.35971 -24.44214 -21.49208 -21.03591 -20.09366 -18.00527 -17.56645 -17.30912 -16.74812 -16.21403 -15.78605 -15.02032 -14.76860 -14.13180 -14.03543 -13.74968 -13.67988 -13.15846 -13.09325 -12.94293 -12.60841 -12.56081 -12.16839 -12.03574 -11.69867 -11.28509 -11.24614 -10.82888 -10.15714 -9.30787 -8.79383 -6.48658 0.23803 1.30899 1.45518 1.51622 1.63332 1.85572 1.85951 2.11258 2.14852 2.64495 2.86367 3.96805 4.19158 4.37410 4.39323 4.45664 4.69351 4.87723 4.91357 4.96164 5.00704 5.05507 5.34990 5.71338 5.98275 6.34893 6.80874 7.03197 7.34084 8.16758 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.011113 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.450717 B = 2518.882718 C = 3838.417142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.544 3.456 4 O -0.531 6.531 5 C -0.128 4.128 6 C -0.175 4.175 7 Cl -0.053 7.053 8 C -0.006 4.006 9 C -0.050 4.050 10 N -0.303 5.303 11 N -0.102 5.102 12 C -0.293 4.293 13 H 0.156 0.844 14 C -0.001 4.001 15 N -0.770 5.770 16 Si 1.023 2.977 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.241 1.241 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.135 0.865 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -2.102 -0.123 4.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.392 3.608 4 O -0.422 6.422 5 C -0.254 4.254 6 C -0.217 4.217 7 Cl -0.025 7.025 8 C -0.152 4.152 9 C -0.109 4.109 10 N -0.140 5.140 11 N 0.131 4.869 12 C -0.431 4.431 13 H 0.173 0.827 14 C -0.219 4.219 15 N -0.395 5.395 16 Si 0.840 3.160 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.163 1.163 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.153 0.847 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.709 -2.602 -0.123 4.533 hybrid contribution -0.766 0.471 -0.047 0.901 sum -4.476 -2.131 -0.170 4.960 Atomic orbital electron populations 1.23561 0.74664 1.05673 1.02482 1.86670 1.25105 1.31469 1.84472 1.19519 0.86510 0.81846 0.72951 1.90777 1.65770 1.36145 1.49472 1.19548 0.88103 0.88731 1.29015 1.20240 0.91695 0.84491 1.25252 1.98192 1.88305 1.18137 1.97837 1.22541 0.94083 0.93183 1.05403 1.20011 0.92344 0.95612 1.02906 1.78297 0.96856 1.07381 1.31478 1.45314 1.03430 1.05140 1.33047 1.21549 0.98291 0.76935 1.46348 0.82707 1.27206 0.93948 1.07121 0.93655 1.70222 1.01453 1.38446 1.29402 0.84509 0.80168 0.71524 0.79838 1.18371 1.18744 1.16337 0.91941 0.91927 0.84719 0.90385 0.91115 0.90037 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.57 113.37 1.20 2.01 15 2 O -0.36 -14.53 8.05 -57.98 -0.47 -14.99 15 3 C 0.54 25.75 7.92 70.00 0.55 26.30 15 4 O -0.53 -25.47 15.43 19.50 0.30 -25.16 15 5 C -0.13 -6.69 6.92 40.45 0.28 -6.41 15 6 C -0.17 -8.73 6.72 22.62 0.15 -8.58 15 7 Cl -0.05 -2.28 27.57 -2.72 -0.07 -2.35 15 8 C -0.01 -0.28 7.18 43.00 0.31 0.03 15 9 C -0.05 -1.89 10.29 71.23 0.73 -1.16 15 10 N -0.30 -16.66 10.40 -47.46 -0.49 -17.15 15 11 N -0.10 -5.53 3.75 -179.52 -0.67 -6.21 15 12 C -0.29 -14.64 9.86 84.15 0.83 -13.81 15 13 H 0.16 7.09 5.68 -2.91 -0.02 7.07 15 14 C 0.00 -0.04 5.50 85.05 0.47 0.43 15 15 N -0.77 -38.44 11.84 21.71 0.26 -38.18 15 16 Si 1.02 33.44 29.56 68.60 2.03 35.47 15 17 H -0.26 -8.21 7.11 99.48 0.71 -7.50 15 18 H -0.26 -8.22 7.11 99.48 0.71 -7.51 15 19 H -0.24 -7.23 7.11 99.48 0.71 -6.52 15 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.13 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.08 2.73 7.97 -2.39 -0.02 2.71 15 26 H 0.29 13.06 8.30 -92.71 -0.77 12.29 15 Total: -1.00 -64.73 255.53 6.62 -58.11 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.22 Total: 11.65 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.52 Total: -1.18 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.91 Total: -61.54 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.17 Total: -40.16 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.47 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.35 kcal Total: -64.73 6.62 -58.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575602546.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.472 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds