Wall clock time and date at job start Mon Mar 30 2020 03:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99774 * 2 1 4 4 C 1.53003 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47052 * 60.41748 * 4 3 2 6 6 C 1.53004 * 109.47232 * 300.41887 * 4 3 2 7 7 C 1.53001 * 109.46999 * 180.41709 * 4 3 2 8 8 N 1.46898 * 109.46979 * 298.47352 * 7 4 3 9 9 C 1.47895 * 110.99934 * 84.25475 * 8 7 4 10 10 C 1.53990 * 107.05927 * 214.15370 * 9 8 7 11 11 C 1.54595 * 105.14161 * 1.22456 * 10 9 8 12 12 O 1.42902 * 110.72228 * 263.42693 * 11 10 9 13 13 C 1.50697 * 110.72556 * 140.31501 * 11 10 9 14 14 H 1.07996 * 119.99767 * 241.45142 * 13 11 10 15 15 C 1.37878 * 120.00206 * 61.45717 * 13 11 10 16 16 N 1.31515 * 119.99774 * 359.97438 * 15 13 11 17 17 Si 1.86789 * 120.00065 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47277 * 59.99872 * 17 15 13 19 19 H 1.48500 * 109.47369 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47293 * 299.99928 * 17 15 13 21 21 C 1.48522 * 111.00367 * 326.85430 * 8 7 4 22 22 H 1.09007 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47150 * 299.99397 * 1 2 3 24 24 H 1.08997 * 109.47533 * 59.99956 * 1 2 3 25 25 H 1.09002 * 109.46987 * 60.00988 * 3 2 1 26 26 H 1.08997 * 109.47504 * 300.00296 * 3 2 1 27 27 H 1.08997 * 109.47416 * 55.13179 * 6 4 3 28 28 H 1.09005 * 109.46695 * 295.13038 * 6 4 3 29 29 H 1.09003 * 109.46926 * 175.13416 * 6 4 3 30 30 H 1.08994 * 109.46959 * 58.47822 * 7 4 3 31 31 H 1.09006 * 109.46896 * 178.47703 * 7 4 3 32 32 H 1.09008 * 109.91790 * 333.50814 * 9 8 7 33 33 H 1.09000 * 109.92292 * 94.79876 * 9 8 7 34 34 H 1.09004 * 110.31354 * 120.14112 * 10 9 8 35 35 H 1.08997 * 110.31154 * 242.20705 * 10 9 8 36 36 H 0.96705 * 113.99766 * 298.53592 * 12 11 10 37 37 H 0.96995 * 119.99833 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.67518 * 278.15903 * 21 8 7 39 39 H 1.09005 * 110.66826 * 41.28565 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8572 0.6504 -0.8946 6 6 3.9867 0.4161 1.2430 7 6 4.1577 2.5824 0.0099 8 7 3.7538 3.3073 -1.2023 9 6 2.4317 3.9453 -1.0226 10 6 1.7189 3.8997 -2.3868 11 6 2.7025 3.1727 -3.3323 12 8 3.4727 4.1145 -4.0819 13 6 1.9634 2.2372 -4.2539 14 1 2.1665 1.1770 -4.2234 15 6 1.0280 2.7349 -5.1362 16 7 0.7804 4.0260 -5.1730 17 14 0.1124 1.5753 -6.2790 18 1 -0.6453 0.5833 -5.4746 19 1 -0.8313 2.3532 -7.1214 20 1 1.0854 0.8674 -7.1494 21 6 3.6027 2.3793 -2.3520 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 3.4764 -0.5463 1.2804 28 1 3.7414 0.9924 2.1351 29 1 5.0639 0.2548 1.1994 30 1 3.8145 3.1263 0.8899 31 1 5.2440 2.4963 0.0367 32 1 1.8514 3.3949 -0.2818 33 1 2.5588 4.9800 -0.7044 34 1 0.7866 3.3404 -2.3081 35 1 1.5239 4.9103 -2.7457 36 1 2.9445 4.6877 -4.6543 37 1 0.1227 4.3761 -5.7939 38 1 4.5711 2.1670 -2.8051 39 1 3.1123 1.4571 -2.0402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:16 Heat of formation + Delta-G solvation = -81.943095 kcal Electronic energy + Delta-G solvation = -19409.999858 eV Core-core repulsion = 16546.195140 eV Total energy + Delta-G solvation = -2863.804718 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.58912 -37.29125 -35.40568 -32.99298 -32.09152 -29.48876 -28.12177 -27.21776 -25.64683 -25.16437 -23.71581 -20.64512 -19.95301 -18.93001 -17.09672 -16.43109 -15.83249 -15.16227 -15.10139 -14.85895 -14.32681 -13.87994 -13.41305 -13.23790 -13.00240 -12.49360 -12.19211 -11.98456 -11.73437 -11.53834 -11.28179 -11.13057 -10.97655 -10.80129 -10.72182 -10.61695 -10.46849 -10.26541 -10.02555 -9.73605 -9.35910 -9.11667 -8.56842 -8.07112 -7.56507 -6.19067 -4.27094 3.23964 3.28963 3.32445 3.97825 4.30810 4.75260 5.06287 5.09076 5.09503 5.36963 5.46089 5.59012 5.62986 5.65416 5.74454 5.79845 5.85930 5.91630 5.99839 6.00474 6.12160 6.19275 6.27671 6.38643 6.45974 6.51680 6.67791 6.93353 7.04448 7.39154 7.41707 7.52038 7.59324 7.75889 7.84657 8.22175 8.75838 9.41830 9.58925 10.87846 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.009055 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.836110 B = 3091.609568 C = 3828.937797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.051 3.949 4 C -0.130 4.130 5 H 0.090 0.910 6 C -0.137 4.137 7 C 0.052 3.948 8 N -0.513 5.513 9 C 0.021 3.979 10 C -0.129 4.129 11 C 0.257 3.743 12 O -0.580 6.580 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.036 3.964 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.376 0.624 37 H 0.266 0.734 38 H 0.070 0.930 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -3.806 10.309 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.025 4.025 4 C -0.149 4.149 5 H 0.109 0.891 6 C -0.195 4.195 7 C -0.078 4.078 8 N -0.235 5.235 9 C -0.107 4.107 10 C -0.168 4.168 11 C 0.216 3.784 12 O -0.388 6.388 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.091 4.091 22 H 0.099 0.901 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.344 -3.714 10.448 11.170 hybrid contribution -1.985 -0.654 -0.681 2.198 sum -0.641 -4.369 9.766 10.718 Atomic orbital electron populations 1.22697 0.81428 1.02246 1.00094 1.87804 1.19362 1.28415 1.95442 1.23188 0.93801 0.84550 1.00996 1.21889 0.93737 0.98969 1.00327 0.89145 1.21686 1.00626 1.00508 0.96713 1.22384 1.00369 0.91001 0.94002 1.64947 1.27278 1.27851 1.03455 1.23243 0.89740 0.98591 0.99137 1.22930 0.98918 1.01937 0.92987 1.19341 0.85644 0.85920 0.87451 1.86153 1.39100 1.52290 1.61253 1.21584 1.21291 0.94213 1.20398 0.92206 1.24987 0.96131 0.95280 0.96693 1.69728 1.34538 1.11727 1.37439 0.86585 0.79513 0.80775 0.80730 1.20204 1.21177 1.20025 1.23559 1.00440 0.94642 0.90457 0.90065 0.94685 0.93496 0.94106 0.90434 0.92030 0.93313 0.92884 0.91776 0.90508 0.94366 0.92047 0.92356 0.91501 0.77489 0.92361 0.91150 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.39 -6.51 9.93 -35.23 -0.35 -6.86 16 3 C 0.05 0.83 3.34 37.16 0.12 0.95 16 4 C -0.13 -1.99 2.13 -90.62 -0.19 -2.18 16 5 H 0.09 1.54 6.06 -51.93 -0.31 1.23 16 6 C -0.14 -1.76 9.11 37.16 0.34 -1.42 16 7 C 0.05 0.81 5.35 -3.82 -0.02 0.79 16 8 N -0.51 -10.03 5.54 -230.46 -1.28 -11.30 16 9 C 0.02 0.40 5.67 -2.76 -0.02 0.38 16 10 C -0.13 -2.96 4.72 -25.38 -0.12 -3.08 16 11 C 0.26 6.40 0.95 -89.91 -0.09 6.32 16 12 O -0.58 -15.50 13.10 -35.23 -0.46 -15.96 16 13 C -0.54 -14.38 8.14 -34.44 -0.28 -14.66 16 14 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 15 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 16 N -0.89 -23.91 11.00 55.43 0.61 -23.30 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 C 0.04 0.78 4.60 -1.90 -0.01 0.77 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 26 H 0.08 1.47 3.81 -51.93 -0.20 1.27 16 27 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.67 4.62 -51.92 -0.24 0.43 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 35 H 0.07 1.63 7.99 -51.93 -0.41 1.21 16 36 H 0.38 10.09 7.46 45.56 0.34 10.43 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.41 3.96 -51.93 -0.21 1.20 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -27.91 296.51 -6.82 -34.73 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.55 Total: 11.31 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 0.76 Total: -8.78 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.67 Total: -34.61 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.81 Total: -22.82 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.91 -6.82 -34.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.212 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds