Wall clock time and date at job start Mon Mar 30 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99774 * 2 1 4 4 C 1.53003 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47052 * 60.41748 * 4 3 2 6 6 C 1.53004 * 109.47232 * 300.41887 * 4 3 2 7 7 C 1.53001 * 109.46999 * 180.41709 * 4 3 2 8 8 N 1.46898 * 109.46979 * 298.47352 * 7 4 3 9 9 C 1.47895 * 110.99934 * 84.25475 * 8 7 4 10 10 C 1.53990 * 107.05927 * 214.15370 * 9 8 7 11 11 C 1.54595 * 105.14161 * 1.22456 * 10 9 8 12 12 O 1.42902 * 110.72228 * 263.42693 * 11 10 9 13 13 C 1.50697 * 110.72556 * 140.31501 * 11 10 9 14 14 H 1.07996 * 119.99767 * 241.45142 * 13 11 10 15 15 C 1.37878 * 120.00206 * 61.45717 * 13 11 10 16 16 N 1.31515 * 119.99774 * 359.97438 * 15 13 11 17 17 Si 1.86789 * 120.00065 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47277 * 59.99872 * 17 15 13 19 19 H 1.48500 * 109.47369 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47293 * 299.99928 * 17 15 13 21 21 C 1.48522 * 111.00367 * 326.85430 * 8 7 4 22 22 H 1.09007 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47150 * 299.99397 * 1 2 3 24 24 H 1.08997 * 109.47533 * 59.99956 * 1 2 3 25 25 H 1.09002 * 109.46987 * 60.00988 * 3 2 1 26 26 H 1.08997 * 109.47504 * 300.00296 * 3 2 1 27 27 H 1.08997 * 109.47416 * 55.13179 * 6 4 3 28 28 H 1.09005 * 109.46695 * 295.13038 * 6 4 3 29 29 H 1.09003 * 109.46926 * 175.13416 * 6 4 3 30 30 H 1.08994 * 109.46959 * 58.47822 * 7 4 3 31 31 H 1.09006 * 109.46896 * 178.47703 * 7 4 3 32 32 H 1.09008 * 109.91790 * 333.50814 * 9 8 7 33 33 H 1.09000 * 109.92292 * 94.79876 * 9 8 7 34 34 H 1.09004 * 110.31354 * 120.14112 * 10 9 8 35 35 H 1.08997 * 110.31154 * 242.20705 * 10 9 8 36 36 H 0.96705 * 113.99766 * 298.53592 * 12 11 10 37 37 H 0.96995 * 119.99833 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.67518 * 278.15903 * 21 8 7 39 39 H 1.09005 * 110.66826 * 41.28565 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8572 0.6504 -0.8946 6 6 3.9867 0.4161 1.2430 7 6 4.1577 2.5824 0.0099 8 7 3.7538 3.3073 -1.2023 9 6 2.4317 3.9453 -1.0226 10 6 1.7189 3.8997 -2.3868 11 6 2.7025 3.1727 -3.3323 12 8 3.4727 4.1145 -4.0819 13 6 1.9634 2.2372 -4.2539 14 1 2.1665 1.1770 -4.2234 15 6 1.0280 2.7349 -5.1362 16 7 0.7804 4.0260 -5.1730 17 14 0.1124 1.5753 -6.2790 18 1 -0.6453 0.5833 -5.4746 19 1 -0.8313 2.3532 -7.1214 20 1 1.0854 0.8674 -7.1494 21 6 3.6027 2.3793 -2.3520 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 3.4764 -0.5463 1.2804 28 1 3.7414 0.9924 2.1351 29 1 5.0639 0.2548 1.1994 30 1 3.8145 3.1263 0.8899 31 1 5.2440 2.4963 0.0367 32 1 1.8514 3.3949 -0.2818 33 1 2.5588 4.9800 -0.7044 34 1 0.7866 3.3404 -2.3081 35 1 1.5239 4.9103 -2.7457 36 1 2.9445 4.6877 -4.6543 37 1 0.1227 4.3761 -5.7939 38 1 4.5711 2.1670 -2.8051 39 1 3.1123 1.4571 -2.0402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:15 Heat of formation + Delta-G solvation = -103.357064 kcal Electronic energy + Delta-G solvation = -19410.928437 eV Core-core repulsion = 16546.195140 eV Total energy + Delta-G solvation = -2864.733297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09413 -38.70763 -37.08454 -34.49220 -34.16319 -31.11431 -29.91074 -28.37098 -27.20700 -26.54539 -25.30130 -22.15047 -21.67760 -20.44655 -19.06006 -17.75081 -17.23234 -16.88448 -16.79081 -16.37117 -15.84478 -15.51898 -14.89827 -14.72813 -14.52866 -13.91444 -13.65945 -13.50952 -13.25699 -13.08005 -12.84987 -12.76941 -12.51640 -12.37744 -12.33042 -12.25468 -12.07338 -11.83068 -11.51496 -11.31747 -11.05634 -10.60699 -10.58264 -10.09155 -9.09626 -8.21721 -6.37085 1.38508 1.40208 1.47563 2.36888 2.79121 3.02820 3.27350 3.82898 3.87480 3.99216 4.10474 4.19605 4.26087 4.37697 4.45203 4.46408 4.52353 4.60090 4.72542 4.74171 4.79452 4.81027 4.92207 5.00172 5.06864 5.14622 5.21892 5.27881 5.41083 5.49699 5.57499 5.77080 5.93488 6.19436 6.21958 6.33605 6.68671 7.34543 7.49065 8.83498 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.009055 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.836110 B = 3091.609568 C = 3828.937797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.052 3.948 4 C -0.126 4.126 5 H 0.068 0.932 6 C -0.129 4.129 7 C 0.052 3.948 8 N -0.522 5.522 9 C 0.029 3.971 10 C -0.117 4.117 11 C 0.238 3.762 12 O -0.591 6.591 13 C -0.560 4.560 14 H 0.050 0.950 15 C 0.032 3.968 16 N -0.910 5.910 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.049 3.951 22 H 0.101 0.899 23 H 0.055 0.945 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.269 0.731 38 H 0.057 0.943 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -4.435 11.962 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.024 4.024 4 C -0.146 4.146 5 H 0.086 0.914 6 C -0.187 4.187 7 C -0.076 4.076 8 N -0.245 5.245 9 C -0.098 4.098 10 C -0.156 4.156 11 C 0.198 3.802 12 O -0.399 6.399 13 C -0.598 4.598 14 H 0.068 0.932 15 C -0.169 4.169 16 N -0.549 5.549 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.079 4.079 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.219 0.781 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.284 -4.347 12.117 12.937 hybrid contribution -1.973 -0.464 -1.191 2.351 sum -0.689 -4.811 10.926 11.958 Atomic orbital electron populations 1.22869 0.80164 1.03703 1.00203 1.87783 1.20833 1.28530 1.95480 1.23126 0.94453 0.84514 1.00295 1.21815 0.93117 0.98838 1.00803 0.91406 1.21614 1.01404 0.99894 0.95765 1.22506 1.01247 0.90981 0.92839 1.64886 1.27144 1.28015 1.04479 1.23164 0.89669 0.99667 0.97308 1.22679 0.98204 0.99900 0.94828 1.19624 0.86741 0.85919 0.87888 1.86144 1.39661 1.52565 1.61490 1.21812 1.22220 0.94133 1.21644 0.93200 1.25642 0.96705 0.96681 0.97841 1.69811 1.34666 1.12748 1.37716 0.85695 0.78393 0.79109 0.78947 1.19679 1.20425 1.20106 1.23336 0.98978 0.94797 0.90758 0.88056 0.92644 0.95264 0.92291 0.93464 0.92686 0.91646 0.91468 0.89493 0.89137 0.92159 0.90939 0.93982 0.93589 0.78139 0.92212 0.92420 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -12.96 9.93 -148.98 -1.48 -14.44 16 3 C 0.05 1.62 3.34 71.98 0.24 1.86 16 4 C -0.13 -3.62 2.13 -10.79 -0.02 -3.65 16 5 H 0.07 2.26 6.06 -2.39 -0.01 2.25 16 6 C -0.13 -2.90 9.11 71.98 0.66 -2.25 16 7 C 0.05 1.50 5.35 86.30 0.46 1.97 16 8 N -0.52 -19.76 5.54 -883.05 -4.89 -24.65 16 9 C 0.03 1.11 5.67 86.45 0.49 1.60 16 10 C -0.12 -5.46 4.72 31.47 0.15 -5.32 16 11 C 0.24 12.11 0.95 -10.33 -0.01 12.10 16 12 O -0.59 -32.33 13.10 -148.98 -1.95 -34.29 16 13 C -0.56 -30.66 8.14 25.60 0.21 -30.45 16 14 H 0.05 2.75 7.78 -2.91 -0.02 2.73 16 15 C 0.03 1.72 5.28 84.65 0.45 2.16 16 16 N -0.91 -49.34 11.00 21.45 0.24 -49.10 16 17 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.05 2.14 4.60 86.65 0.40 2.54 16 22 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.60 7.67 -2.39 -0.02 1.58 16 26 H 0.05 1.76 3.81 -2.39 -0.01 1.75 16 27 H 0.05 1.32 7.53 -2.39 -0.02 1.31 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.14 7.86 -2.39 -0.02 2.12 16 31 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.06 2.00 4.62 -2.38 -0.01 1.99 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.04 2.04 7.62 -2.38 -0.02 2.03 16 35 H 0.05 2.28 7.99 -2.39 -0.02 2.26 16 36 H 0.37 20.52 7.46 -74.05 -0.55 19.96 16 37 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.07 3.01 3.96 -2.38 -0.01 3.00 16 Total: -1.00 -59.75 296.51 -1.31 -61.05 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.48 Total: 34.19 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.26 Total: -17.49 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -4.65 Total: -73.75 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -3.43 Total: -48.73 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -59.75 -1.31 -61.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.305 kcal (2) G-P(sol) polarization free energy of solvation -59.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds