Wall clock time and date at job start Mon Mar 30 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47107 * 2 1 4 4 C 1.42907 * 114.00317 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47448 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46862 * 305.00378 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99505 * 6 5 4 9 9 C 1.52997 * 109.47482 * 184.99813 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.47477 * 111.00047 * 265.97286 * 10 9 6 12 12 C 1.53513 * 87.92932 * 221.29743 * 11 10 9 13 13 C 1.50700 * 114.34648 * 139.68711 * 12 11 10 14 14 H 1.08005 * 119.99583 * 266.07840 * 13 12 11 15 15 C 1.37877 * 120.00435 * 86.06645 * 13 12 11 16 16 N 1.31519 * 119.99772 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00372 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46803 * 60.00178 * 17 15 13 19 19 H 1.48497 * 109.47325 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47116 * 300.00701 * 17 15 13 21 21 C 1.47481 * 111.00017 * 169.99694 * 10 9 6 22 22 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46874 * 299.99935 * 1 2 3 24 24 H 1.08998 * 109.47084 * 59.99812 * 1 2 3 25 25 H 1.08998 * 109.46874 * 240.00065 * 2 1 3 26 26 H 1.08998 * 109.47084 * 120.00188 * 2 1 3 27 27 H 1.09000 * 109.46877 * 59.99916 * 4 3 2 28 28 H 1.09007 * 109.46498 * 299.99961 * 4 3 2 29 29 H 1.09001 * 109.47166 * 59.99149 * 5 4 3 30 30 H 1.09004 * 109.46717 * 300.00101 * 5 4 3 31 31 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 34 34 H 1.09000 * 113.47846 * 336.05901 * 11 10 9 35 35 H 1.08998 * 113.47506 * 106.53321 * 11 10 9 36 36 H 1.09005 * 114.16820 * 272.37471 * 12 11 10 37 37 H 0.96998 * 120.00145 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.47744 * 253.47034 * 21 10 9 39 39 H 1.08996 * 113.47276 * 23.88258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3506 3.0592 0.0001 7 1 5.7593 2.4999 0.8416 8 8 5.8704 2.5297 -1.2212 9 6 5.7455 4.5319 0.1265 10 7 7.2099 4.6479 0.1271 11 6 7.7381 4.6658 1.5040 12 6 8.7106 5.7664 1.0571 13 6 8.9053 6.8700 2.0647 14 1 8.3065 7.7669 2.0056 15 6 9.8476 6.7347 3.0621 16 7 10.5769 5.6426 3.1339 17 14 10.0884 8.1024 4.3114 18 1 8.8183 8.3306 5.0463 19 1 11.1533 7.7145 5.2710 20 1 10.4852 9.3496 3.6097 21 6 7.6286 6.0570 0.0077 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8333 0.9767 -0.8908 28 1 3.8340 0.9764 0.8893 29 1 3.4229 3.4214 0.8905 30 1 3.4222 3.4224 -0.8894 31 1 5.5485 2.9804 -2.0138 32 1 5.3490 4.9358 1.0581 33 1 5.3368 5.0912 -0.7151 34 1 7.0115 5.0025 2.2434 35 1 8.2339 3.7385 1.7909 36 1 9.6466 5.3930 0.6416 37 1 11.2401 5.5475 3.8353 38 1 8.0316 6.3086 -0.9733 39 1 6.8724 6.7648 0.3469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:54 Heat of formation + Delta-G solvation = -77.196500 kcal Electronic energy + Delta-G solvation = -17487.267849 eV Core-core repulsion = 14623.668958 eV Total energy + Delta-G solvation = -2863.598890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.21433 -38.28502 -36.89553 -32.78422 -32.55614 -31.06559 -29.46148 -26.42614 -24.78012 -24.06343 -22.99784 -21.76442 -21.02578 -18.59263 -16.84677 -16.78613 -16.58186 -15.89898 -15.47256 -14.85852 -14.50614 -14.46489 -14.02037 -13.70968 -13.53280 -12.89382 -12.64568 -12.06694 -12.04260 -11.75260 -11.70884 -11.38841 -11.20325 -11.13421 -10.97996 -10.70851 -10.58986 -10.25525 -10.13359 -9.73214 -9.48353 -9.18022 -8.92237 -8.43481 -7.93788 -6.05065 -4.09994 3.29794 3.35065 3.36987 3.44608 4.39193 4.52627 4.77257 4.79937 4.92045 4.97299 5.06837 5.14155 5.22308 5.27076 5.36138 5.39168 5.55787 5.62817 5.65219 5.73213 5.82525 5.92985 5.98522 6.15081 6.22334 6.37599 6.48152 6.68507 6.75347 7.06127 7.15736 7.19151 7.72803 7.87499 7.92697 8.10448 8.37801 8.93110 9.54922 11.04454 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.041677 B = 0.003660 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.670886 B = 7647.851637 C = 7920.940796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.394 6.394 4 C 0.067 3.933 5 C -0.149 4.149 6 C 0.121 3.879 7 H 0.097 0.903 8 O -0.548 6.548 9 C -0.010 4.010 10 N -0.472 5.472 11 C 0.002 3.998 12 C 0.043 3.957 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.007 4.007 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.368 0.632 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -8.375 -6.090 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.314 6.314 4 C -0.010 4.010 5 C -0.188 4.188 6 C 0.061 3.939 7 H 0.115 0.885 8 O -0.352 6.352 9 C -0.140 4.140 10 N -0.194 5.194 11 C -0.127 4.127 12 C 0.024 3.976 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.135 4.135 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.214 0.786 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.288 -9.231 -6.059 18.859 hybrid contribution -0.493 1.423 1.059 1.841 sum -15.781 -7.808 -5.000 18.303 Atomic orbital electron populations 1.21745 0.93903 1.02112 1.03075 1.22428 0.95429 0.84047 1.00074 1.87855 1.21775 1.26284 1.95501 1.22439 0.80397 0.97381 1.00733 1.22257 0.97165 0.95536 1.03818 1.21721 0.89686 0.94267 0.88178 0.88493 1.86603 1.72790 1.60667 1.15136 1.23308 0.93392 0.96257 1.01027 1.68877 1.07345 1.20715 1.22511 1.24135 0.98871 1.01439 0.88249 1.20069 0.92682 0.93058 0.91828 1.21003 1.20140 1.02680 1.11790 0.92532 1.25026 0.95280 0.95577 0.97743 1.69963 1.22799 1.26275 1.33271 0.86672 0.77822 0.82423 0.81159 1.20261 1.21221 1.20147 1.24010 0.99709 0.89177 1.00651 0.91209 0.91887 0.91925 0.93477 0.93484 0.92562 0.93361 0.90355 0.90943 0.78619 0.93381 0.91737 0.92994 0.91812 0.91796 0.92787 0.92060 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.39 -4.80 10.34 -35.23 -0.36 -5.17 16 4 C 0.07 0.78 5.83 37.16 0.22 1.00 16 5 C -0.15 -1.77 5.26 -26.74 -0.14 -1.91 16 6 C 0.12 1.73 3.24 -26.74 -0.09 1.64 16 7 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 8 O -0.55 -8.07 12.74 -35.23 -0.45 -8.52 16 9 C -0.01 -0.17 4.48 -3.83 -0.02 -0.18 16 10 N -0.47 -9.60 6.20 -244.63 -1.52 -11.12 16 11 C 0.00 0.05 7.28 -7.54 -0.05 -0.01 16 12 C 0.04 1.08 3.76 -91.24 -0.34 0.74 16 13 C -0.52 -14.17 8.83 -34.44 -0.30 -14.48 16 14 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -25.72 13.26 55.43 0.74 -24.99 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 C -0.01 -0.14 7.25 -7.54 -0.05 -0.20 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 28 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.37 4.14 9.05 45.56 0.41 4.55 16 32 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 33 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 35 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.06 1.79 8.11 -51.93 -0.42 1.37 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -30.02 323.03 -8.20 -38.22 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.20 Total: 2.28 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.25 Total: -11.64 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.78 Total: -36.10 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.81 Total: -13.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.02 -8.20 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.980 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds