Wall clock time and date at job start Mon Mar 30 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47107 * 2 1 4 4 C 1.42907 * 114.00317 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47448 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46862 * 305.00378 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99505 * 6 5 4 9 9 C 1.52997 * 109.47482 * 184.99813 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.47477 * 111.00047 * 265.97286 * 10 9 6 12 12 C 1.53513 * 87.92932 * 221.29743 * 11 10 9 13 13 C 1.50700 * 114.34648 * 139.68711 * 12 11 10 14 14 H 1.08005 * 119.99583 * 266.07840 * 13 12 11 15 15 C 1.37877 * 120.00435 * 86.06645 * 13 12 11 16 16 N 1.31519 * 119.99772 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00372 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46803 * 60.00178 * 17 15 13 19 19 H 1.48497 * 109.47325 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47116 * 300.00701 * 17 15 13 21 21 C 1.47481 * 111.00017 * 169.99694 * 10 9 6 22 22 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46874 * 299.99935 * 1 2 3 24 24 H 1.08998 * 109.47084 * 59.99812 * 1 2 3 25 25 H 1.08998 * 109.46874 * 240.00065 * 2 1 3 26 26 H 1.08998 * 109.47084 * 120.00188 * 2 1 3 27 27 H 1.09000 * 109.46877 * 59.99916 * 4 3 2 28 28 H 1.09007 * 109.46498 * 299.99961 * 4 3 2 29 29 H 1.09001 * 109.47166 * 59.99149 * 5 4 3 30 30 H 1.09004 * 109.46717 * 300.00101 * 5 4 3 31 31 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 34 34 H 1.09000 * 113.47846 * 336.05901 * 11 10 9 35 35 H 1.08998 * 113.47506 * 106.53321 * 11 10 9 36 36 H 1.09005 * 114.16820 * 272.37471 * 12 11 10 37 37 H 0.96998 * 120.00145 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.47744 * 253.47034 * 21 10 9 39 39 H 1.08996 * 113.47276 * 23.88258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3506 3.0592 0.0001 7 1 5.7593 2.4999 0.8416 8 8 5.8704 2.5297 -1.2212 9 6 5.7455 4.5319 0.1265 10 7 7.2099 4.6479 0.1271 11 6 7.7381 4.6658 1.5040 12 6 8.7106 5.7664 1.0571 13 6 8.9053 6.8700 2.0647 14 1 8.3065 7.7669 2.0056 15 6 9.8476 6.7347 3.0621 16 7 10.5769 5.6426 3.1339 17 14 10.0884 8.1024 4.3114 18 1 8.8183 8.3306 5.0463 19 1 11.1533 7.7145 5.2710 20 1 10.4852 9.3496 3.6097 21 6 7.6286 6.0570 0.0077 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8333 0.9767 -0.8908 28 1 3.8340 0.9764 0.8893 29 1 3.4229 3.4214 0.8905 30 1 3.4222 3.4224 -0.8894 31 1 5.5485 2.9804 -2.0138 32 1 5.3490 4.9358 1.0581 33 1 5.3368 5.0912 -0.7151 34 1 7.0115 5.0025 2.2434 35 1 8.2339 3.7385 1.7909 36 1 9.6466 5.3930 0.6416 37 1 11.2401 5.5475 3.8353 38 1 8.0316 6.3086 -0.9733 39 1 6.8724 6.7648 0.3469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:54 Heat of formation + Delta-G solvation = -100.356304 kcal Electronic energy + Delta-G solvation = -17488.272133 eV Core-core repulsion = 14623.668958 eV Total energy + Delta-G solvation = -2864.603175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81661 -39.28067 -38.04839 -34.73831 -33.57398 -32.13816 -30.78856 -28.10067 -26.57681 -25.61816 -23.69872 -23.07936 -22.22860 -20.45993 -18.71618 -17.72018 -17.50278 -17.20568 -16.63710 -16.58648 -16.23955 -15.55410 -15.33425 -14.99603 -14.79161 -14.16848 -13.85357 -13.41809 -13.27911 -13.15217 -12.91330 -12.81713 -12.72156 -12.42272 -12.24415 -12.00404 -11.94497 -11.86052 -11.63713 -11.18478 -10.94337 -10.73640 -10.56078 -10.49181 -9.62568 -8.15521 -6.27650 1.42827 1.44383 1.52391 2.41844 2.58374 3.13399 3.27539 3.63944 3.78512 4.02742 4.05410 4.15611 4.21387 4.25255 4.35392 4.41816 4.48081 4.49164 4.57092 4.64055 4.67892 4.78031 4.83835 4.91566 4.97611 5.01070 5.05710 5.16477 5.23096 5.25998 5.52460 5.61532 5.84331 6.24210 6.28774 6.39858 6.82112 6.94284 7.41102 8.94147 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.041677 B = 0.003660 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.670886 B = 7647.851637 C = 7920.940796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.411 6.411 4 C 0.069 3.931 5 C -0.137 4.137 6 C 0.131 3.869 7 H 0.078 0.922 8 O -0.563 6.563 9 C -0.011 4.011 10 N -0.473 5.473 11 C 0.014 3.986 12 C 0.021 3.979 13 C -0.532 4.532 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.923 5.923 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.268 1.268 21 C 0.009 3.991 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.384 0.616 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.576 -7.862 -6.433 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.332 6.332 4 C -0.008 4.008 5 C -0.176 4.176 6 C 0.071 3.929 7 H 0.096 0.904 8 O -0.370 6.370 9 C -0.141 4.141 10 N -0.195 5.195 11 C -0.116 4.116 12 C 0.002 3.998 13 C -0.570 4.570 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.120 4.120 22 H 0.109 0.891 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.232 0.768 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.068 -8.712 -6.425 20.211 hybrid contribution 0.030 1.209 1.093 1.630 sum -17.039 -7.504 -5.332 19.366 Atomic orbital electron populations 1.21763 0.92640 1.03424 1.02735 1.22666 0.96526 0.82963 1.00720 1.87824 1.21700 1.28042 1.95604 1.22379 0.80543 0.97146 1.00712 1.22090 0.95014 0.95964 1.04494 1.21531 0.91214 0.92483 0.87683 0.90399 1.86572 1.73330 1.61178 1.15911 1.23411 0.90449 0.98096 1.02098 1.68800 1.10554 1.20045 1.20102 1.23867 0.98378 0.99449 0.89883 1.20021 0.92572 0.93798 0.93439 1.21361 1.20213 1.03233 1.12218 0.92119 1.25874 0.95056 0.97907 0.99807 1.70100 1.23576 1.28331 1.34176 0.85590 0.77939 0.79435 0.78576 1.19311 1.21097 1.19312 1.23833 0.98277 0.89987 0.99865 0.89109 0.92345 0.92110 0.92666 0.93012 0.92426 0.93616 0.90283 0.89595 0.76761 0.93305 0.89307 0.93000 0.93965 0.95491 0.92828 0.90869 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.41 -9.37 10.34 -148.98 -1.54 -10.91 16 4 C 0.07 1.50 5.83 71.98 0.42 1.92 16 5 C -0.14 -2.98 5.26 30.59 0.16 -2.82 16 6 C 0.13 3.54 3.24 30.59 0.10 3.64 16 7 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 8 O -0.56 -15.64 12.74 -148.98 -1.90 -17.54 16 9 C -0.01 -0.35 4.48 86.30 0.39 0.04 16 10 N -0.47 -18.83 6.20 -927.86 -5.75 -24.58 16 11 C 0.01 0.64 7.28 83.58 0.61 1.25 16 12 C 0.02 1.07 3.76 -11.20 -0.04 1.03 16 13 C -0.53 -29.26 8.83 25.60 0.23 -29.03 16 14 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.92 -54.80 13.26 21.45 0.28 -54.52 16 17 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 C 0.01 0.38 7.25 83.58 0.61 0.98 16 22 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.24 7.82 -2.39 -0.02 1.22 16 28 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.38 7.70 9.05 -74.06 -0.67 7.04 16 32 H 0.05 1.51 7.30 -2.39 -0.02 1.50 16 33 H 0.09 2.31 8.08 -2.39 -0.02 2.29 16 34 H 0.05 2.40 7.38 -2.39 -0.02 2.38 16 35 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.57 8.11 -2.38 -0.02 1.55 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.06 2.47 7.87 -2.39 -0.02 2.45 16 Total: -1.00 -64.18 323.03 -2.40 -66.58 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.33 Total: 17.49 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.15 Total: -21.78 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -5.47 Total: -79.10 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -3.44 Total: -28.45 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.18 -2.40 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.773 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds