Wall clock time and date at job start Mon Mar 30 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00119 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47112 * 184.99952 * 4 3 2 6 6 N 1.46906 * 109.46946 * 64.99873 * 4 3 2 7 7 C 1.46901 * 110.99793 * 85.00144 * 6 4 3 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.53000 * 109.47134 * 304.99779 * 4 3 2 17 17 C 1.53174 * 109.54662 * 299.82401 * 16 4 3 18 18 C 1.53103 * 109.15924 * 183.24203 * 17 16 4 19 19 O 1.42907 * 109.48459 * 57.47145 * 18 17 16 20 20 C 1.42905 * 114.09881 * 298.88864 * 19 18 17 21 21 C 1.53094 * 109.41437 * 61.16038 * 20 19 18 22 22 H 1.08999 * 109.47159 * 60.00320 * 1 2 3 23 23 H 1.09007 * 109.47254 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47302 * 299.99933 * 1 2 3 25 25 H 1.09008 * 109.47028 * 59.99574 * 3 2 1 26 26 H 1.08994 * 109.46944 * 299.99976 * 3 2 1 27 27 H 1.00898 * 110.99995 * 208.95221 * 6 4 3 28 28 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 29 29 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 30 30 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.54203 * 60.00327 * 16 4 3 32 32 H 1.08998 * 109.52006 * 303.05622 * 17 16 4 33 33 H 1.09000 * 109.52257 * 63.24451 * 17 16 4 34 34 H 1.08998 * 109.40750 * 297.49387 * 18 17 16 35 35 H 1.08996 * 109.49446 * 177.50710 * 18 17 16 36 36 H 1.09002 * 109.48024 * 301.17575 * 20 19 18 37 37 H 1.09003 * 109.47766 * 181.14032 * 20 19 18 38 38 H 1.08996 * 109.51913 * 182.48479 * 21 20 19 39 39 H 1.08998 * 109.57154 * 62.32918 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2543 7 6 4.1207 1.5656 -2.3178 8 6 4.5754 0.8915 -3.5866 9 1 4.7413 -0.1756 -3.6016 10 6 4.7787 1.6369 -4.7285 11 7 4.5763 2.9362 -4.7104 12 14 5.3417 0.8011 -6.3014 13 1 4.3373 -0.2137 -6.7096 14 1 5.4863 1.8154 -7.3764 15 1 6.6497 0.1375 -6.0686 16 6 3.9780 0.3199 1.1826 17 6 3.5213 0.9697 2.4924 18 6 4.0380 0.1408 3.6714 19 8 5.4619 0.0442 3.5985 20 6 5.9434 -0.5988 2.4166 21 6 5.5052 0.2015 1.1873 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8465 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 4.8378 0.0516 -1.1212 28 1 4.8580 2.3104 -2.0181 29 1 3.1608 2.0530 -2.4887 30 1 4.7197 3.4606 -5.5137 31 1 3.5357 -0.6724 1.0942 32 1 3.9224 1.9811 2.5564 33 1 2.4323 1.0062 2.5205 34 1 3.6034 -0.8580 3.6300 35 1 3.7537 0.6224 4.6069 36 1 5.5337 -1.6073 2.3588 37 1 7.0318 -0.6497 2.4482 38 1 5.8337 -0.3108 0.2831 39 1 5.9476 1.1970 1.2230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:27 Heat of formation + Delta-G solvation = -103.981909 kcal Electronic energy + Delta-G solvation = -18531.553601 eV Core-core repulsion = 15666.793209 eV Total energy + Delta-G solvation = -2864.760393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.57655 -37.64985 -35.73182 -33.42584 -31.88345 -31.05791 -28.93110 -26.54516 -25.50537 -24.64377 -23.26031 -21.85131 -20.47480 -19.55861 -16.76185 -16.12392 -15.93205 -15.90073 -15.26048 -15.06544 -14.61974 -14.59652 -14.12843 -13.71271 -13.45094 -12.94940 -12.61859 -12.24222 -12.03787 -11.68166 -11.34126 -11.31750 -11.19478 -11.12486 -10.80515 -10.74138 -10.41986 -10.16964 -10.07151 -9.87162 -9.36410 -9.17614 -9.10124 -8.46647 -7.22149 -6.02126 -4.03605 3.34425 3.38012 3.41528 3.92655 4.23045 4.44118 4.84036 4.86646 4.99214 5.08740 5.22381 5.30956 5.33905 5.44321 5.49312 5.58775 5.61817 5.70207 5.79038 5.83818 5.86543 5.87922 5.92990 6.06457 6.13816 6.19327 6.34201 6.41530 6.67582 7.23721 7.25227 7.42629 7.60358 7.81960 8.15480 8.44927 8.64592 9.05782 9.61204 11.09039 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.006105 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.933023 B = 4585.611045 C = 5371.220912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.076 3.924 4 C 0.095 3.905 5 H 0.047 0.953 6 N -0.677 5.677 7 C 0.195 3.805 8 C -0.512 4.512 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.084 4.084 17 C -0.149 4.149 18 C 0.063 3.937 19 O -0.388 6.388 20 C 0.064 3.936 21 C -0.157 4.157 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.330 0.670 28 H -0.015 1.015 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -4.489 14.710 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.001 4.001 4 C -0.016 4.016 5 H 0.065 0.935 6 N -0.310 5.310 7 C 0.068 3.932 8 C -0.551 4.551 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.103 4.103 17 C -0.187 4.187 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.194 4.194 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.002 0.998 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.762 -4.602 14.524 15.694 hybrid contribution 0.589 0.405 -1.018 1.244 sum -3.172 -4.198 13.506 14.495 Atomic orbital electron populations 1.22656 0.82728 1.01946 0.99229 1.87961 1.17938 1.27694 1.95120 1.22582 0.94064 0.84558 0.98922 1.21496 0.93016 0.96252 0.90796 0.93529 1.60667 1.37064 1.28892 1.04330 1.19594 0.95773 0.89325 0.88518 1.21149 1.44640 0.94579 0.94697 0.92028 1.24983 0.95703 0.94819 0.99063 1.69952 1.49619 1.05366 1.28959 0.86548 0.79197 0.79013 0.82550 1.20171 1.21377 1.20273 1.21232 0.94579 1.00933 0.93537 1.22247 1.01324 1.00068 0.95052 1.22541 0.81284 0.99148 0.98387 1.87888 1.21272 1.80293 1.41242 1.22560 0.99258 0.94939 0.84504 1.22310 0.96590 1.01707 0.98835 0.94381 0.90291 0.95156 0.94383 0.93113 0.85073 0.99770 0.95649 0.92908 0.89508 0.91419 0.90805 0.93320 0.89368 0.93211 0.89125 0.90172 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.33 9.77 -35.23 -0.34 -6.68 16 3 C 0.08 1.29 5.20 37.16 0.19 1.49 16 4 C 0.10 1.70 2.03 -67.71 -0.14 1.56 16 5 H 0.05 0.87 7.80 -51.93 -0.40 0.47 16 6 N -0.68 -14.68 6.25 -107.99 -0.67 -15.35 16 7 C 0.19 5.13 5.24 -4.97 -0.03 5.10 16 8 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 9 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 12 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.08 -1.24 1.79 -90.44 -0.16 -1.40 16 17 C -0.15 -1.86 4.98 -26.59 -0.13 -1.99 16 18 C 0.06 0.73 6.84 37.21 0.25 0.98 16 19 O -0.39 -5.22 10.77 -35.23 -0.38 -5.60 16 20 C 0.06 0.79 6.84 37.21 0.25 1.04 16 21 C -0.16 -2.19 5.11 -26.59 -0.14 -2.33 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.55 6.79 -51.92 -0.35 0.19 16 26 H 0.05 0.97 7.35 -51.93 -0.38 0.59 16 27 H 0.33 6.84 6.23 -39.29 -0.24 6.59 16 28 H -0.02 -0.43 8.06 -51.93 -0.42 -0.85 16 29 H 0.03 0.72 7.36 -51.93 -0.38 0.34 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.38 7.56 -51.93 -0.39 0.98 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.87 6.74 -51.93 -0.35 0.52 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -31.15 308.41 -6.84 -37.99 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.61 Total: 1.90 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.80 Total: -7.49 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.06 Total: -41.64 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.72 Total: -12.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.15 -6.84 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.993 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds