Wall clock time and date at job start Mon Mar 30 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00119 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47112 * 184.99952 * 4 3 2 6 6 N 1.46906 * 109.46946 * 64.99873 * 4 3 2 7 7 C 1.46901 * 110.99793 * 85.00144 * 6 4 3 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.53000 * 109.47134 * 304.99779 * 4 3 2 17 17 C 1.53174 * 109.54662 * 299.82401 * 16 4 3 18 18 C 1.53103 * 109.15924 * 183.24203 * 17 16 4 19 19 O 1.42907 * 109.48459 * 57.47145 * 18 17 16 20 20 C 1.42905 * 114.09881 * 298.88864 * 19 18 17 21 21 C 1.53094 * 109.41437 * 61.16038 * 20 19 18 22 22 H 1.08999 * 109.47159 * 60.00320 * 1 2 3 23 23 H 1.09007 * 109.47254 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47302 * 299.99933 * 1 2 3 25 25 H 1.09008 * 109.47028 * 59.99574 * 3 2 1 26 26 H 1.08994 * 109.46944 * 299.99976 * 3 2 1 27 27 H 1.00898 * 110.99995 * 208.95221 * 6 4 3 28 28 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 29 29 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 30 30 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.54203 * 60.00327 * 16 4 3 32 32 H 1.08998 * 109.52006 * 303.05622 * 17 16 4 33 33 H 1.09000 * 109.52257 * 63.24451 * 17 16 4 34 34 H 1.08998 * 109.40750 * 297.49387 * 18 17 16 35 35 H 1.08996 * 109.49446 * 177.50710 * 18 17 16 36 36 H 1.09002 * 109.48024 * 301.17575 * 20 19 18 37 37 H 1.09003 * 109.47766 * 181.14032 * 20 19 18 38 38 H 1.08996 * 109.51913 * 182.48479 * 21 20 19 39 39 H 1.08998 * 109.57154 * 62.32918 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2543 7 6 4.1207 1.5656 -2.3178 8 6 4.5754 0.8915 -3.5866 9 1 4.7413 -0.1756 -3.6016 10 6 4.7787 1.6369 -4.7285 11 7 4.5763 2.9362 -4.7104 12 14 5.3417 0.8011 -6.3014 13 1 4.3373 -0.2137 -6.7096 14 1 5.4863 1.8154 -7.3764 15 1 6.6497 0.1375 -6.0686 16 6 3.9780 0.3199 1.1826 17 6 3.5213 0.9697 2.4924 18 6 4.0380 0.1408 3.6714 19 8 5.4619 0.0442 3.5985 20 6 5.9434 -0.5988 2.4166 21 6 5.5052 0.2015 1.1873 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8465 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 4.8378 0.0516 -1.1212 28 1 4.8580 2.3104 -2.0181 29 1 3.1608 2.0530 -2.4887 30 1 4.7197 3.4606 -5.5137 31 1 3.5357 -0.6724 1.0942 32 1 3.9224 1.9811 2.5564 33 1 2.4323 1.0062 2.5205 34 1 3.6034 -0.8580 3.6300 35 1 3.7537 0.6224 4.6069 36 1 5.5337 -1.6073 2.3588 37 1 7.0318 -0.6497 2.4482 38 1 5.8337 -0.3108 0.2831 39 1 5.9476 1.1970 1.2230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:27 Heat of formation + Delta-G solvation = -126.638116 kcal Electronic energy + Delta-G solvation = -18532.536048 eV Core-core repulsion = 15666.793209 eV Total energy + Delta-G solvation = -2865.742840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72547 -38.89930 -37.19767 -35.24675 -33.63693 -32.08272 -30.44192 -28.21475 -26.91564 -25.88987 -24.39131 -23.67058 -21.86707 -20.82801 -18.64985 -17.51251 -17.35237 -16.91747 -16.61666 -16.47914 -16.27669 -15.65342 -15.52523 -15.21939 -14.62395 -14.53957 -14.12405 -13.83168 -13.42799 -13.18764 -12.92655 -12.73271 -12.61531 -12.51250 -12.28863 -12.20717 -12.01599 -11.65475 -11.48256 -11.15167 -11.10268 -10.67467 -10.45882 -10.39749 -9.06863 -8.23442 -6.34492 1.39870 1.43611 1.51623 2.39128 2.96404 3.01310 3.09769 3.48893 3.68842 3.78374 3.97410 4.09726 4.26558 4.36128 4.40383 4.47944 4.54660 4.56158 4.64318 4.67142 4.72857 4.81566 4.87293 4.91484 4.94496 4.97336 5.07997 5.16924 5.22397 5.27129 5.46666 5.61953 6.02290 6.29119 6.33893 6.51066 6.74139 6.89707 7.36524 8.87997 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.006105 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.933023 B = 4585.611045 C = 5371.220912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.081 3.919 4 C 0.091 3.909 5 H 0.034 0.966 6 N -0.677 5.677 7 C 0.213 3.787 8 C -0.535 4.535 9 H 0.062 0.938 10 C 0.002 3.998 11 N -0.934 5.934 12 Si 0.973 3.027 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.265 1.265 16 C -0.074 4.074 17 C -0.143 4.143 18 C 0.062 3.938 19 O -0.402 6.402 20 C 0.068 3.932 21 C -0.156 4.156 22 H 0.029 0.971 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.335 0.665 28 H -0.042 1.042 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -5.806 15.631 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C 0.004 3.996 4 C -0.020 4.020 5 H 0.052 0.948 6 N -0.309 5.309 7 C 0.085 3.915 8 C -0.574 4.574 9 H 0.081 0.919 10 C -0.196 4.196 11 N -0.575 5.575 12 Si 0.797 3.203 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.092 4.092 17 C -0.182 4.182 18 C -0.014 4.014 19 O -0.321 6.321 20 C -0.009 4.009 21 C -0.194 4.194 22 H 0.047 0.953 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.155 0.845 28 H -0.024 1.024 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.918 -5.932 15.472 17.027 hybrid contribution 0.569 0.833 -1.260 1.614 sum -3.349 -5.099 14.211 15.465 Atomic orbital electron populations 1.22876 0.80670 1.03485 1.00073 1.87913 1.20231 1.27426 1.95266 1.22469 0.93296 0.84869 0.98956 1.21628 0.93854 0.96098 0.90372 0.94804 1.60564 1.37218 1.27820 1.05347 1.19194 0.93140 0.89425 0.89721 1.21507 1.45156 0.94801 0.95901 0.91939 1.25947 0.95444 0.95431 1.02807 1.70084 1.50274 1.06953 1.30139 0.85388 0.79115 0.78011 0.77792 1.19451 1.20696 1.18999 1.21122 0.94963 0.99911 0.93252 1.22216 1.02017 0.99831 0.94088 1.22689 0.80355 0.99699 0.98674 1.87879 1.22421 1.80457 1.41357 1.22585 1.00226 0.94852 0.83209 1.22288 0.96080 1.01354 0.99654 0.95269 0.88465 0.92536 0.91139 0.96230 0.84543 1.02440 0.98577 0.92620 0.90109 0.91831 0.89668 0.92316 0.87132 0.92096 0.87736 0.91080 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.39 -13.03 9.77 -148.98 -1.46 -14.49 16 3 C 0.08 2.77 5.20 71.98 0.37 3.15 16 4 C 0.09 3.30 2.03 44.91 0.09 3.39 16 5 H 0.03 1.32 7.80 -2.39 -0.02 1.31 16 6 N -0.68 -30.23 6.25 -495.56 -3.10 -33.32 16 7 C 0.21 11.73 5.24 85.56 0.45 12.18 16 8 C -0.54 -31.30 9.32 25.60 0.24 -31.06 16 9 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 10 C 0.00 0.11 5.46 84.66 0.46 0.57 16 11 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 12 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 C -0.07 -2.12 1.79 -10.68 -0.02 -2.14 16 17 C -0.14 -3.31 4.98 30.69 0.15 -3.16 16 18 C 0.06 1.26 6.84 72.02 0.49 1.75 16 19 O -0.40 -9.90 10.77 -148.98 -1.60 -11.50 16 20 C 0.07 1.55 6.84 72.01 0.49 2.04 16 21 C -0.16 -4.30 5.11 30.69 0.16 -4.14 16 22 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.92 6.79 -2.38 -0.02 1.91 16 26 H 0.02 0.78 7.35 -2.39 -0.02 0.76 16 27 H 0.33 14.21 6.23 -89.70 -0.56 13.65 16 28 H -0.04 -2.48 8.06 -2.39 -0.02 -2.50 16 29 H 0.00 -0.23 7.36 -2.39 -0.02 -0.25 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.08 2.46 7.56 -2.39 -0.02 2.44 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.78 6.74 -2.39 -0.02 1.76 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.07 6.36 -2.39 -0.02 2.05 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -67.60 308.41 0.75 -66.85 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.46 Total: 18.02 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.14 Total: -15.53 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.81 Total: -90.32 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -3.06 Total: -25.99 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.60 0.75 -66.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.790 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds