Wall clock time and date at job start Mon Mar 30 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 C 1.52989 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47728 * 60.00119 * 6 5 3 8 8 C 1.53008 * 109.46626 * 300.00301 * 7 6 5 9 9 H 1.08999 * 109.46614 * 299.99470 * 8 7 6 10 10 C 1.53006 * 109.46883 * 179.97438 * 8 7 6 11 11 H 1.08998 * 109.46779 * 299.99642 * 10 8 7 12 12 C 1.52992 * 109.47209 * 59.99481 * 10 8 7 13 13 O 1.42907 * 109.47461 * 55.00172 * 12 10 8 14 14 N 1.46496 * 109.46820 * 179.97438 * 10 8 7 15 15 C 1.36935 * 119.99920 * 155.00044 * 14 10 8 16 16 H 1.07999 * 119.99860 * 359.97438 * 15 14 10 17 17 C 1.38815 * 120.00089 * 179.97438 * 15 14 10 18 18 N 1.31615 * 120.00099 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46890 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46910 * 120.00232 * 19 17 15 22 22 H 1.48500 * 109.46684 * 240.00050 * 19 17 15 23 23 C 1.52992 * 109.47622 * 59.99637 * 8 7 6 24 24 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46614 * 300.00276 * 5 3 2 28 28 H 1.09000 * 109.46387 * 59.99775 * 5 3 2 29 29 H 1.08999 * 109.47260 * 299.99579 * 6 5 3 30 30 H 1.09002 * 109.47238 * 180.02562 * 6 5 3 31 31 H 1.08994 * 109.47538 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47191 * 59.99417 * 7 6 5 33 33 H 1.09002 * 109.47056 * 175.00132 * 12 10 8 34 34 H 1.08998 * 109.47507 * 295.00034 * 12 10 8 35 35 H 0.96699 * 114.00218 * 180.02562 * 13 12 10 36 36 H 0.96999 * 120.00409 * 334.99377 * 14 10 8 37 37 H 0.96996 * 120.00531 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47546 * 180.02562 * 23 8 7 39 39 H 1.08998 * 109.47118 * 59.99698 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1891 3.1263 -0.7215 8 6 3.9817 2.6603 0.7210 9 1 3.3168 3.3544 1.2349 10 6 5.3306 2.6171 1.4420 11 1 5.9952 1.9227 0.9278 12 6 5.9539 4.0143 1.4419 13 8 5.0330 4.9468 2.0117 14 7 5.1319 2.1715 2.8233 15 6 6.1576 1.5707 3.5031 16 1 7.1128 1.4251 3.0208 17 6 5.9695 1.1489 4.8122 18 7 4.8055 1.3269 5.4002 19 14 7.3685 0.3288 5.7394 20 1 8.5634 0.2472 4.8615 21 1 7.6955 1.1263 6.9487 22 1 6.9584 -1.0397 6.1448 23 6 3.3590 1.2628 0.7211 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.8829 1.0776 -1.9563 28 1 1.2567 1.8015 -1.9563 29 1 2.1754 3.8630 -0.9286 30 1 2.9877 3.5011 -2.4702 31 1 4.6326 4.1220 -0.7211 32 1 4.8541 2.4322 -1.2354 33 1 6.8709 4.0030 2.0311 34 1 6.1835 4.3097 0.4182 35 1 5.3624 5.8554 2.0436 36 1 4.2738 2.3020 3.2564 37 1 4.6741 1.0325 6.3150 38 1 3.2108 0.9311 1.7487 39 1 4.0239 0.5688 0.2071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595630715.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:42 Heat of formation + Delta-G solvation = -105.014553 kcal Electronic energy + Delta-G solvation = -18737.709729 eV Core-core repulsion = 15872.904558 eV Total energy + Delta-G solvation = -2864.805171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -39.23060 -37.26511 -35.60558 -34.11896 -31.82864 -29.93366 -29.44751 -26.86499 -26.26388 -23.88337 -22.34629 -21.84669 -19.86320 -19.37955 -17.24371 -16.49946 -16.12737 -15.45255 -14.94271 -14.82058 -14.46937 -13.91326 -13.65389 -13.43070 -13.13262 -13.02599 -12.53559 -12.02225 -11.92822 -11.59525 -11.50036 -11.07877 -10.83036 -10.79982 -10.73098 -10.49317 -10.17392 -10.05690 -10.00909 -9.78651 -9.57128 -9.30409 -9.04211 -8.81767 -6.85522 -5.68791 -2.96313 3.47026 3.52137 3.54618 3.96209 4.63384 4.94227 4.98343 5.05892 5.21745 5.32140 5.39249 5.52204 5.53348 5.56030 5.64045 5.71922 5.79333 5.81637 5.86111 5.88164 6.01094 6.13930 6.19027 6.29764 6.34318 6.42328 6.49649 6.58899 6.62292 6.78747 7.04152 7.10401 7.47846 7.74786 8.29327 8.49430 9.61072 10.20747 10.56311 11.53779 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.007208 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.680240 B = 3883.681069 C = 4805.963527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.089 3.911 4 H 0.057 0.943 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.081 4.081 9 H 0.076 0.924 10 C 0.184 3.816 11 H 0.058 0.942 12 C 0.056 3.944 13 O -0.559 6.559 14 N -0.713 5.713 15 C -0.238 4.238 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.929 5.929 19 Si 0.903 3.097 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.104 4.104 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.025 0.975 35 H 0.359 0.641 36 H 0.386 0.614 37 H 0.253 0.747 38 H 0.083 0.917 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 4.013 -13.893 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.176 4.176 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.100 4.100 9 H 0.094 0.906 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.024 4.024 13 O -0.361 6.361 14 N -0.353 5.353 15 C -0.369 4.369 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.735 3.265 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.142 4.142 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.203 0.797 36 H 0.221 0.779 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.260 3.188 -13.767 15.078 hybrid contribution 0.687 0.356 0.671 1.024 sum -4.573 3.545 -13.095 14.317 Atomic orbital electron populations 1.22727 0.81980 1.02211 0.99565 1.87934 1.18911 1.28527 1.95012 1.22253 0.95849 0.83747 0.94967 0.92528 1.22023 1.00596 0.97406 0.97544 1.21458 0.97390 0.96232 1.00025 1.21632 0.96510 1.01198 0.95823 1.21209 0.98268 0.95886 0.94626 0.90568 1.20306 0.93686 0.90875 0.87799 0.92431 1.23177 0.92744 0.92468 0.94043 1.86578 1.44331 1.19826 1.85413 1.42317 1.14235 1.70084 1.08655 1.19272 0.92647 1.30232 0.94744 0.91364 1.24711 0.96868 1.02092 0.97211 1.69678 1.22307 1.52613 1.13157 0.86174 0.81525 0.78932 0.79896 1.20673 1.22020 1.21938 1.21564 0.93454 0.97377 1.01780 0.94644 0.94117 0.90100 0.91361 0.92692 0.92119 0.92274 0.91816 0.92260 0.94122 0.95730 0.79697 0.77939 0.93681 0.89829 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.48 16 2 O -0.38 -6.24 10.35 -35.23 -0.36 -6.60 16 3 C 0.09 1.38 2.61 -26.72 -0.07 1.31 16 4 H 0.06 0.86 7.79 -51.93 -0.40 0.45 16 5 C -0.14 -1.78 5.54 -26.73 -0.15 -1.93 16 6 C -0.11 -1.38 5.92 -26.74 -0.16 -1.54 16 7 C -0.11 -1.57 4.85 -26.73 -0.13 -1.70 16 8 C -0.08 -1.39 1.63 -90.62 -0.15 -1.54 16 9 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 10 C 0.18 3.71 2.27 -67.93 -0.15 3.55 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.02 6.35 37.15 0.24 1.26 16 13 O -0.56 -10.14 12.73 -35.23 -0.45 -10.59 16 14 N -0.71 -18.09 4.37 -53.43 -0.23 -18.33 16 15 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 19 Si 0.90 22.74 29.55 -169.99 -5.02 17.72 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 C -0.10 -1.87 4.69 -26.73 -0.13 -2.00 16 24 H 0.03 0.37 7.87 -51.93 -0.41 -0.04 16 25 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.64 7.87 -51.93 -0.41 0.23 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.37 6.71 -51.93 -0.35 0.02 16 35 H 0.36 4.75 9.12 45.56 0.42 5.17 16 36 H 0.39 10.71 7.58 -40.82 -0.31 10.40 16 37 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.80 7.45 -51.93 -0.39 1.41 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -31.83 309.28 -6.46 -38.29 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.93 Total: 11.09 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.15 Total: -8.37 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.49 Total: -46.20 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.81 Total: -17.19 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.83 -6.46 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595630715.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.721 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds