Wall clock time and date at job start Mon Mar 30 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 C 1.52989 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47728 * 60.00119 * 6 5 3 8 8 C 1.53008 * 109.46626 * 300.00301 * 7 6 5 9 9 H 1.08999 * 109.46614 * 299.99470 * 8 7 6 10 10 C 1.53006 * 109.46883 * 179.97438 * 8 7 6 11 11 H 1.08998 * 109.46779 * 299.99642 * 10 8 7 12 12 C 1.52992 * 109.47209 * 59.99481 * 10 8 7 13 13 O 1.42907 * 109.47461 * 55.00172 * 12 10 8 14 14 N 1.46496 * 109.46820 * 179.97438 * 10 8 7 15 15 C 1.36935 * 119.99920 * 155.00044 * 14 10 8 16 16 H 1.07999 * 119.99860 * 359.97438 * 15 14 10 17 17 C 1.38815 * 120.00089 * 179.97438 * 15 14 10 18 18 N 1.31615 * 120.00099 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46890 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46910 * 120.00232 * 19 17 15 22 22 H 1.48500 * 109.46684 * 240.00050 * 19 17 15 23 23 C 1.52992 * 109.47622 * 59.99637 * 8 7 6 24 24 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46614 * 300.00276 * 5 3 2 28 28 H 1.09000 * 109.46387 * 59.99775 * 5 3 2 29 29 H 1.08999 * 109.47260 * 299.99579 * 6 5 3 30 30 H 1.09002 * 109.47238 * 180.02562 * 6 5 3 31 31 H 1.08994 * 109.47538 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47191 * 59.99417 * 7 6 5 33 33 H 1.09002 * 109.47056 * 175.00132 * 12 10 8 34 34 H 1.08998 * 109.47507 * 295.00034 * 12 10 8 35 35 H 0.96699 * 114.00218 * 180.02562 * 13 12 10 36 36 H 0.96999 * 120.00409 * 334.99377 * 14 10 8 37 37 H 0.96996 * 120.00531 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47546 * 180.02562 * 23 8 7 39 39 H 1.08998 * 109.47118 * 59.99698 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1891 3.1263 -0.7215 8 6 3.9817 2.6603 0.7210 9 1 3.3168 3.3544 1.2349 10 6 5.3306 2.6171 1.4420 11 1 5.9952 1.9227 0.9278 12 6 5.9539 4.0143 1.4419 13 8 5.0330 4.9468 2.0117 14 7 5.1319 2.1715 2.8233 15 6 6.1576 1.5707 3.5031 16 1 7.1128 1.4251 3.0208 17 6 5.9695 1.1489 4.8122 18 7 4.8055 1.3269 5.4002 19 14 7.3685 0.3288 5.7394 20 1 8.5634 0.2472 4.8615 21 1 7.6955 1.1263 6.9487 22 1 6.9584 -1.0397 6.1448 23 6 3.3590 1.2628 0.7211 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.8829 1.0776 -1.9563 28 1 1.2567 1.8015 -1.9563 29 1 2.1754 3.8630 -0.9286 30 1 2.9877 3.5011 -2.4702 31 1 4.6326 4.1220 -0.7211 32 1 4.8541 2.4322 -1.2354 33 1 6.8709 4.0030 2.0311 34 1 6.1835 4.3097 0.4182 35 1 5.3624 5.8554 2.0436 36 1 4.2738 2.3020 3.2564 37 1 4.6741 1.0325 6.3150 38 1 3.2108 0.9311 1.7487 39 1 4.0239 0.5688 0.2071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595630715.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:35 Heat of formation + Delta-G solvation = -128.885498 kcal Electronic energy + Delta-G solvation = -18738.744851 eV Core-core repulsion = 15872.904558 eV Total energy + Delta-G solvation = -2865.840293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -40.51038 -38.63913 -36.89243 -35.91180 -33.61043 -31.21476 -31.08423 -28.39956 -27.31922 -25.82006 -23.75763 -23.09950 -21.18670 -20.83983 -19.15344 -18.04267 -17.41321 -16.76126 -16.54255 -16.06814 -15.83998 -15.53388 -15.17476 -14.86730 -14.64131 -14.40682 -13.76224 -13.46773 -13.27208 -13.11884 -12.85829 -12.73323 -12.52777 -12.36174 -12.06513 -11.91515 -11.79149 -11.71654 -11.36565 -11.23952 -11.19541 -10.86243 -10.62676 -10.29180 -8.93669 -7.90065 -5.16846 1.45763 1.47123 1.56558 2.57369 2.83544 3.42166 3.64069 3.79947 3.83527 4.02065 4.11378 4.20485 4.26895 4.43047 4.50636 4.52167 4.56065 4.61775 4.66804 4.67852 4.79764 4.83502 4.91151 5.00044 5.09431 5.15044 5.20729 5.30006 5.36859 5.39718 5.49919 5.60167 5.67948 6.30989 6.34541 7.11088 7.37190 8.16095 8.39280 9.33961 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.007208 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.680240 B = 3883.681069 C = 4805.963527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.130 4.130 6 C -0.108 4.108 7 C -0.108 4.108 8 C -0.067 4.067 9 H 0.058 0.942 10 C 0.171 3.829 11 H 0.056 0.944 12 C 0.066 3.934 13 O -0.579 6.579 14 N -0.725 5.725 15 C -0.233 4.233 16 H 0.075 0.925 17 C -0.080 4.080 18 N -0.970 5.970 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.296 1.296 23 C -0.099 4.099 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.382 0.618 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.035 0.965 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 4.876 -16.317 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.168 4.168 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.087 4.087 9 H 0.077 0.923 10 C 0.063 3.937 11 H 0.074 0.926 12 C -0.014 4.014 13 O -0.385 6.385 14 N -0.364 5.364 15 C -0.365 4.365 16 H 0.093 0.907 17 C -0.271 4.271 18 N -0.621 5.621 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.223 1.223 22 H -0.224 1.224 23 C -0.137 4.137 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.202 0.798 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.896 4.085 -16.250 17.456 hybrid contribution 0.545 0.101 1.369 1.477 sum -4.351 4.186 -14.880 16.059 Atomic orbital electron populations 1.22942 0.79952 1.03604 1.00558 1.87883 1.21222 1.29003 1.95276 1.22206 0.94057 0.83714 0.96637 0.92703 1.21967 1.01815 0.97763 0.95267 1.21452 0.96016 0.95672 1.01438 1.21602 0.98132 1.01791 0.93030 1.21058 0.95964 0.94908 0.96747 0.92326 1.20643 0.95625 0.92111 0.85340 0.92631 1.22913 0.91290 0.91187 0.96017 1.86527 1.44757 1.21489 1.85681 1.42485 1.12922 1.70380 1.10585 1.19677 0.93258 1.28708 0.94898 0.90664 1.25522 0.99274 1.03883 0.98465 1.69848 1.24461 1.54680 1.13146 0.85126 0.79202 0.77321 0.78469 1.18886 1.22265 1.22394 1.21453 0.95421 0.97662 0.99176 0.92376 0.94330 0.88639 0.91492 0.90626 0.91943 0.89327 0.90527 0.91508 0.96098 0.91471 0.77061 0.79839 0.94340 0.94625 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.82 113.37 1.23 1.82 16 2 O -0.41 -13.32 10.35 -148.98 -1.54 -14.86 16 3 C 0.09 2.77 2.61 30.60 0.08 2.85 16 4 H 0.05 1.65 7.79 -2.39 -0.02 1.63 16 5 C -0.13 -3.02 5.54 30.59 0.17 -2.85 16 6 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 7 C -0.11 -2.67 4.85 30.60 0.15 -2.52 16 8 C -0.07 -2.30 1.63 -10.79 -0.02 -2.32 16 9 H 0.06 2.22 7.56 -2.39 -0.02 2.20 16 10 C 0.17 6.88 2.27 44.99 0.10 6.98 16 11 H 0.06 2.23 8.08 -2.39 -0.02 2.22 16 12 C 0.07 2.29 6.35 71.98 0.46 2.74 16 13 O -0.58 -20.21 12.73 -148.98 -1.90 -22.11 16 14 N -0.72 -37.88 4.37 -322.95 -1.41 -39.29 16 15 C -0.23 -13.29 9.93 84.03 0.83 -12.45 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 18 N -0.97 -61.84 13.06 21.65 0.28 -61.55 16 19 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 23 C -0.10 -3.66 4.69 30.59 0.14 -3.52 16 24 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 25 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 26 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.73 6.54 -2.39 -0.02 1.71 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.78 6.71 -2.39 -0.02 1.76 16 35 H 0.38 9.32 9.12 -74.06 -0.68 8.64 16 36 H 0.37 21.50 7.58 -92.71 -0.70 20.80 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 38 H 0.03 1.62 7.45 -2.39 -0.02 1.61 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.69 309.28 0.90 -69.79 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.35 Total: 33.95 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 3.79 Total: -15.58 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -1.13 Total: -100.85 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -3.44 Total: -36.96 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -70.69 0.90 -69.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595630715.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.100 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds