Wall clock time and date at job start Mon Mar 30 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00045 * 2 1 4 4 C 1.50697 * 109.47559 * 293.95484 * 3 2 1 5 5 H 1.08004 * 119.99454 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99489 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00201 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47199 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47136 * 120.00357 * 8 6 4 11 11 H 1.48498 * 109.47292 * 240.00342 * 8 6 4 12 12 C 1.46895 * 111.00246 * 123.95852 * 2 1 3 13 13 C 1.53006 * 109.47221 * 66.04564 * 12 2 1 14 14 H 1.09001 * 109.47002 * 304.99874 * 13 12 2 15 15 O 1.42895 * 109.47000 * 64.99905 * 13 12 2 16 16 C 1.52997 * 109.47127 * 185.00300 * 13 12 2 17 17 C 1.53001 * 109.47049 * 174.99763 * 16 13 12 18 18 O 1.42894 * 112.85183 * 55.33305 * 17 16 13 19 19 C 1.53776 * 113.61506 * 284.13168 * 17 16 13 20 20 C 1.53948 * 87.02399 * 220.04822 * 19 17 16 21 21 C 1.53782 * 113.61272 * 186.52728 * 17 16 13 22 22 H 1.08997 * 109.46648 * 296.04002 * 1 2 3 23 23 H 1.08997 * 109.47013 * 56.04415 * 1 2 3 24 24 H 1.08998 * 109.46954 * 176.04558 * 1 2 3 25 25 H 1.08995 * 109.47321 * 53.95931 * 3 2 1 26 26 H 1.09000 * 109.47213 * 173.95792 * 3 2 1 27 27 H 0.97004 * 119.99642 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47158 * 306.04148 * 12 2 1 29 29 H 1.09004 * 109.47713 * 186.04322 * 12 2 1 30 30 H 0.96696 * 113.99976 * 60.00990 * 15 13 12 31 31 H 1.08998 * 109.46934 * 294.99762 * 16 13 12 32 32 H 1.09006 * 109.47500 * 54.99635 * 16 13 12 33 33 H 0.96697 * 114.00224 * 179.97438 * 18 17 16 34 34 H 1.09003 * 113.61390 * 334.57431 * 19 17 16 35 35 H 1.09005 * 113.61414 * 105.47026 * 19 17 16 36 36 H 1.09001 * 113.53824 * 270.81623 * 20 19 17 37 37 H 1.08999 * 113.74598 * 139.94422 * 20 19 17 38 38 H 1.09002 * 113.61522 * 254.53005 * 21 17 16 39 39 H 1.09002 * 113.61517 * 25.35039 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0268 3.3495 -1.5284 7 7 2.7120 4.0018 -0.6148 8 14 1.5818 4.1874 -3.1375 9 1 0.8137 3.2451 -3.9903 10 1 0.7543 5.3884 -2.8580 11 1 2.8232 4.5949 -3.8433 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2427 0.9701 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1803 16 6 2.0700 -3.0200 2.2128 17 6 1.5960 -4.4705 2.1007 18 8 2.0416 -5.1089 0.9025 19 6 0.0931 -4.6501 2.3722 20 6 0.4660 -5.9346 3.1343 21 6 1.8469 -5.3004 3.3708 22 1 -0.3632 0.4511 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5612 1.9273 0.8309 26 1 3.0797 1.3444 0.1082 27 1 2.9866 4.9180 -0.7768 28 1 1.5613 -0.3873 2.0627 29 1 3.0798 -0.6612 1.1755 30 1 3.2601 -2.7168 -0.1362 31 1 3.1570 -2.9980 2.2904 32 1 1.6331 -2.5626 3.1006 33 1 1.7515 -6.0271 0.8148 34 1 -0.3318 -3.8730 3.0077 35 1 -0.4947 -4.8304 1.4721 36 1 0.4957 -6.8225 2.5027 37 1 -0.1079 -6.0847 4.0488 38 1 2.6731 -6.0051 3.2758 39 1 1.9039 -4.7014 4.2797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599307691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:56 Heat of formation + Delta-G solvation = -79.218841 kcal Electronic energy + Delta-G solvation = -18213.520588 eV Core-core repulsion = 15349.834003 eV Total energy + Delta-G solvation = -2863.686585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07715 -37.54194 -35.27167 -34.28064 -32.46888 -31.01836 -27.77547 -26.77000 -25.96901 -24.67885 -22.76145 -21.06720 -20.15998 -19.64682 -16.80063 -16.48816 -16.02421 -15.68948 -15.17009 -14.83278 -14.23203 -14.14985 -13.56151 -13.44266 -13.25562 -12.97608 -12.64640 -12.53949 -11.88489 -11.65131 -11.30652 -11.13950 -11.08431 -10.98087 -10.83542 -10.66633 -10.61777 -10.32669 -10.21203 -9.91696 -9.72174 -9.36152 -8.93863 -8.39823 -7.11456 -5.98723 -3.99293 3.34318 3.41434 3.47541 4.10703 4.27824 4.32353 4.45627 4.53410 4.63793 4.82799 5.16965 5.28169 5.36995 5.38522 5.47892 5.48577 5.56023 5.64973 5.72406 5.80286 5.85221 5.88990 5.94776 6.13669 6.19880 6.28188 6.38056 6.55257 6.82056 7.33247 7.38259 7.67474 7.86116 8.12739 8.25027 8.32382 8.62028 9.09318 9.64827 11.12389 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.054903 B = 0.004276 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.866474 B = 6546.821354 C = 6591.334644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.022 3.978 13 C 0.120 3.880 14 H 0.091 0.909 15 O -0.531 6.531 16 C -0.133 4.133 17 C 0.124 3.876 18 O -0.518 6.518 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.173 4.173 22 H 0.007 0.993 23 H 0.074 0.926 24 H 0.046 0.954 25 H -0.012 1.012 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.365 0.635 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.367 0.633 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -18.128 8.879 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.107 4.107 13 C 0.060 3.940 14 H 0.109 0.891 15 O -0.334 6.334 16 C -0.171 4.171 17 C 0.082 3.918 18 O -0.322 6.322 19 C -0.209 4.209 20 C -0.185 4.185 21 C -0.211 4.211 22 H 0.025 0.975 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.006 0.994 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.210 0.790 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.213 0.787 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.081 -17.690 8.176 19.730 hybrid contribution -0.177 0.591 0.495 0.791 sum -3.257 -17.099 8.671 19.447 Atomic orbital electron populations 1.22246 0.89169 0.99494 1.00271 1.62012 1.06682 1.17290 1.39370 1.19748 0.95282 0.81767 0.96560 1.21228 1.34472 0.96792 1.01688 0.91741 1.24998 0.95372 0.97371 0.97013 1.69978 1.38691 1.11372 1.34075 0.86438 0.78151 0.79249 0.83587 1.19604 1.21183 1.21013 1.22827 1.00381 0.94442 0.93081 1.21754 0.97537 0.90279 0.84446 0.89098 1.86622 1.22503 1.83833 1.40462 1.22256 1.02148 0.92596 1.00075 1.22059 0.92758 0.92542 0.84422 1.86714 1.76833 1.29121 1.39508 1.23766 0.98002 0.98100 1.01058 1.22887 0.97363 0.97386 1.00835 1.23762 0.97543 1.00094 0.99686 0.97456 0.90753 0.93528 0.99386 0.95392 0.93065 0.95730 0.91351 0.78981 0.90966 0.90029 0.78717 0.89341 0.90698 0.90322 0.91185 0.91034 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.14 60.07 0.55 1.31 16 2 N -0.53 -11.97 4.70 -244.38 -1.15 -13.12 16 3 C 0.19 5.17 4.72 -4.98 -0.02 5.14 16 4 C -0.50 -14.60 8.46 -34.44 -0.29 -14.89 16 5 H 0.06 1.87 7.12 -52.48 -0.37 1.50 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.02 0.40 4.60 -3.82 -0.02 0.38 16 13 C 0.12 1.85 2.88 -26.73 -0.08 1.77 16 14 H 0.09 1.47 6.07 -51.93 -0.32 1.15 16 15 O -0.53 -9.12 11.63 -55.52 -0.65 -9.77 16 16 C -0.13 -1.59 4.58 -26.73 -0.12 -1.71 16 17 C 0.12 1.32 1.41 -89.81 -0.13 1.19 16 18 O -0.52 -6.16 11.79 -55.52 -0.65 -6.82 16 19 C -0.17 -1.64 7.14 -25.83 -0.18 -1.83 16 20 C -0.15 -1.14 7.76 -25.83 -0.20 -1.34 16 21 C -0.17 -1.48 7.44 -25.92 -0.19 -1.67 16 22 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 23 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 24 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 25 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 26 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 29 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 30 H 0.36 5.43 9.04 45.56 0.41 5.84 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.37 3.04 8.33 45.56 0.38 3.42 16 34 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -32.68 312.72 -7.96 -40.64 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.16 Total: 3.99 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.78 Total: -10.19 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.41 Total: -39.69 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.30 Total: -16.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.68 -7.96 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.579 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds