Wall clock time and date at job start Mon Mar 30 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47124 * 2 1 4 4 C 1.36936 * 120.00210 * 265.78843 * 3 2 1 5 5 H 1.07993 * 120.00168 * 146.21722 * 4 3 2 6 6 C 1.38812 * 119.99667 * 326.21209 * 4 3 2 7 7 N 1.31616 * 120.00628 * 337.69191 * 6 4 3 8 8 Si 1.86805 * 119.99414 * 157.68894 * 6 4 3 9 9 H 1.48500 * 109.47102 * 60.00460 * 8 6 4 10 10 H 1.48500 * 109.47153 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47498 * 299.99982 * 8 6 4 12 12 C 1.46503 * 119.99685 * 85.79395 * 3 2 1 13 13 C 1.52999 * 109.47476 * 89.99657 * 12 3 2 14 14 C 1.52996 * 109.46826 * 179.97438 * 13 12 3 15 15 O 1.42901 * 109.46841 * 179.97438 * 14 13 12 16 16 C 1.42901 * 114.00203 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.90597 * 32.13576 * 16 15 14 18 18 C 1.55303 * 110.84907 * 155.71502 * 16 15 14 19 19 C 1.54948 * 100.94154 * 152.32763 * 18 16 15 20 20 O 1.43643 * 105.13453 * 323.55185 * 19 18 16 21 21 C 1.43241 * 109.97208 * 24.43573 * 20 19 18 22 22 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47015 * 299.99940 * 1 2 3 24 24 H 1.08996 * 109.47462 * 59.99420 * 1 2 3 25 25 H 1.09009 * 109.47151 * 240.00597 * 2 1 3 26 26 H 1.08996 * 109.47462 * 120.00580 * 2 1 3 27 27 H 0.97000 * 120.00142 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46744 * 329.99482 * 12 3 2 29 29 H 1.09002 * 109.46485 * 209.99905 * 12 3 2 30 30 H 1.09001 * 109.46623 * 59.99777 * 13 12 3 31 31 H 1.09001 * 109.46811 * 300.00019 * 13 12 3 32 32 H 1.09001 * 109.47537 * 60.00539 * 14 13 12 33 33 H 1.09001 * 109.47606 * 299.99734 * 14 13 12 34 34 H 1.09001 * 111.12711 * 270.24839 * 18 16 15 35 35 H 1.09001 * 111.12341 * 34.40561 * 18 16 15 36 36 H 1.08999 * 110.30643 * 204.63871 * 19 18 16 37 37 H 1.08996 * 110.39338 * 82.51953 * 19 18 16 38 38 H 1.09004 * 109.82813 * 238.77608 * 21 20 19 39 39 H 1.08993 * 109.91034 * 117.83900 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9978 -1.1827 5 1 2.1595 3.0580 -1.2996 6 6 2.8607 1.2600 -2.2312 7 7 3.4696 0.1183 -1.9902 8 14 2.7124 1.8876 -3.9844 9 1 3.3850 3.2068 -4.0964 10 1 3.3564 0.9229 -4.9117 11 1 1.2775 2.0317 -4.3390 12 6 2.1747 2.1028 1.2654 13 6 3.5854 1.8745 1.8118 14 6 3.7488 2.6286 3.1329 15 8 5.0662 2.4148 3.6436 16 6 5.3247 3.0799 4.8817 17 1 4.4190 3.1455 5.4845 18 6 6.4599 2.3666 5.6657 19 6 7.0390 3.5479 6.4843 20 8 6.9560 4.6856 5.6113 21 6 5.9252 4.4811 4.6379 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8417 -0.3970 -2.7230 28 1 1.4426 1.7368 1.9852 29 1 2.0180 3.1684 1.0976 30 1 4.3175 2.2405 1.0919 31 1 3.7420 0.8089 1.9794 32 1 3.0168 2.2630 3.8530 33 1 3.5924 3.6942 2.9649 34 1 6.0589 1.5936 6.3213 35 1 7.2072 1.9550 4.9874 36 1 8.0774 3.3504 6.7507 37 1 6.4442 3.7156 7.3822 38 1 6.3485 4.5324 3.6348 39 1 5.1512 5.2400 4.7519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685976818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:50 Heat of formation + Delta-G solvation = -81.327234 kcal Electronic energy + Delta-G solvation = -17806.860428 eV Core-core repulsion = 14943.082415 eV Total energy + Delta-G solvation = -2863.778012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.68331 -37.33208 -36.01841 -32.61837 -31.41810 -30.82536 -29.04487 -28.38569 -25.17259 -23.33658 -22.58184 -21.60847 -21.27124 -19.68315 -17.36844 -16.67707 -16.55760 -15.57813 -15.22370 -14.86547 -14.66365 -14.04579 -13.74056 -13.55287 -13.17788 -12.74370 -12.56872 -12.22540 -12.03803 -11.68499 -11.44836 -11.37462 -10.95947 -10.95310 -10.78265 -10.64308 -10.48618 -10.24401 -9.87064 -9.76762 -9.70081 -9.54793 -9.36445 -8.44760 -6.59668 -5.75815 -3.29185 3.39086 3.45179 3.46468 3.51052 3.90688 4.32399 4.51266 4.72958 4.81978 4.97207 5.10234 5.35619 5.43514 5.46313 5.50863 5.53450 5.57996 5.66302 5.79989 5.86625 6.04295 6.17358 6.32799 6.37481 6.51502 6.58319 6.70139 6.78237 6.89566 6.98334 7.17422 7.29589 7.43395 7.78407 7.84580 8.53408 9.22004 9.85691 10.41887 11.25062 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.004423 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.024428 B = 6329.028206 C = 6798.810237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 N -0.584 5.584 4 C -0.258 4.258 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.152 3.848 13 C -0.133 4.133 14 C 0.062 3.938 15 O -0.369 6.369 16 C 0.055 3.945 17 H 0.075 0.925 18 C -0.154 4.154 19 C 0.052 3.948 20 O -0.382 6.382 21 C 0.027 3.973 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.019 0.981 27 H 0.255 0.745 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 3.873 14.501 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.304 5.304 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.025 3.975 13 C -0.174 4.174 14 C -0.015 4.015 15 O -0.288 6.288 16 C -0.004 4.004 17 H 0.093 0.907 18 C -0.191 4.191 19 C -0.025 4.025 20 O -0.302 6.302 21 C -0.050 4.050 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.306 3.818 14.283 14.963 hybrid contribution -0.355 0.212 -0.775 0.878 sum 1.951 4.029 13.508 14.231 Atomic orbital electron populations 1.22314 1.00978 0.98649 1.00322 1.20950 0.89702 0.86464 1.01788 1.43911 1.73831 1.11840 1.00807 1.19050 1.36117 0.93987 0.89643 0.92070 1.25088 0.96988 0.97904 0.99137 1.69980 1.36392 1.15858 1.30864 0.86454 0.77900 0.78130 0.84823 1.20761 1.21631 1.20985 1.20788 0.91911 0.96208 0.88570 1.22281 1.01946 1.00040 0.93098 1.22797 0.82457 0.99439 0.96773 1.88033 1.33192 1.71348 1.36211 1.23590 0.98050 0.91633 0.87112 0.90712 1.23313 0.98406 0.98393 0.99033 1.23328 1.01613 0.84587 0.92951 1.88410 1.56126 1.40572 1.45079 1.23708 0.90731 0.96914 0.93690 0.94727 0.94977 0.93280 0.88335 0.96256 0.93528 0.94776 0.93919 0.90948 0.92094 0.93926 0.93722 0.89408 0.89084 0.89407 0.92088 0.89930 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 37.15 0.38 -2.95 16 2 C 0.14 3.27 5.97 -4.04 -0.02 3.24 16 3 N -0.58 -14.55 2.45 -173.24 -0.43 -14.98 16 4 C -0.26 -7.05 9.49 -15.06 -0.14 -7.20 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.24 4.93 -17.43 -0.09 0.15 16 7 N -0.89 -25.63 11.32 55.49 0.63 -25.00 16 8 Si 0.90 21.63 29.61 -169.99 -5.03 16.59 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.15 3.16 5.69 -4.04 -0.02 3.14 16 13 C -0.13 -2.65 5.91 -26.73 -0.16 -2.81 16 14 C 0.06 0.98 5.82 37.16 0.22 1.19 16 15 O -0.37 -5.92 10.08 -35.23 -0.36 -6.27 16 16 C 0.06 0.68 3.44 -24.79 -0.09 0.60 16 17 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 18 C -0.15 -1.62 6.89 -24.48 -0.17 -1.78 16 19 C 0.05 0.50 7.78 38.19 0.30 0.80 16 20 O -0.38 -4.95 11.36 -35.23 -0.40 -5.35 16 21 C 0.03 0.33 7.58 37.88 0.29 0.62 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.10 2.66 5.32 -51.92 -0.28 2.39 16 26 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -29.87 319.25 -7.27 -37.14 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.98 Total: -1.94 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.49 Total: -5.00 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.20 Total: -39.98 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.76 Total: -11.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -7.27 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685976818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.189 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds