Wall clock time and date at job start Mon Mar 30 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47124 * 2 1 4 4 C 1.36936 * 120.00210 * 265.78843 * 3 2 1 5 5 H 1.07993 * 120.00168 * 146.21722 * 4 3 2 6 6 C 1.38812 * 119.99667 * 326.21209 * 4 3 2 7 7 N 1.31616 * 120.00628 * 337.69191 * 6 4 3 8 8 Si 1.86805 * 119.99414 * 157.68894 * 6 4 3 9 9 H 1.48500 * 109.47102 * 60.00460 * 8 6 4 10 10 H 1.48500 * 109.47153 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47498 * 299.99982 * 8 6 4 12 12 C 1.46503 * 119.99685 * 85.79395 * 3 2 1 13 13 C 1.52999 * 109.47476 * 89.99657 * 12 3 2 14 14 C 1.52996 * 109.46826 * 179.97438 * 13 12 3 15 15 O 1.42901 * 109.46841 * 179.97438 * 14 13 12 16 16 C 1.42901 * 114.00203 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.90597 * 32.13576 * 16 15 14 18 18 C 1.55303 * 110.84907 * 155.71502 * 16 15 14 19 19 C 1.54948 * 100.94154 * 152.32763 * 18 16 15 20 20 O 1.43643 * 105.13453 * 323.55185 * 19 18 16 21 21 C 1.43241 * 109.97208 * 24.43573 * 20 19 18 22 22 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47015 * 299.99940 * 1 2 3 24 24 H 1.08996 * 109.47462 * 59.99420 * 1 2 3 25 25 H 1.09009 * 109.47151 * 240.00597 * 2 1 3 26 26 H 1.08996 * 109.47462 * 120.00580 * 2 1 3 27 27 H 0.97000 * 120.00142 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46744 * 329.99482 * 12 3 2 29 29 H 1.09002 * 109.46485 * 209.99905 * 12 3 2 30 30 H 1.09001 * 109.46623 * 59.99777 * 13 12 3 31 31 H 1.09001 * 109.46811 * 300.00019 * 13 12 3 32 32 H 1.09001 * 109.47537 * 60.00539 * 14 13 12 33 33 H 1.09001 * 109.47606 * 299.99734 * 14 13 12 34 34 H 1.09001 * 111.12711 * 270.24839 * 18 16 15 35 35 H 1.09001 * 111.12341 * 34.40561 * 18 16 15 36 36 H 1.08999 * 110.30643 * 204.63871 * 19 18 16 37 37 H 1.08996 * 110.39338 * 82.51953 * 19 18 16 38 38 H 1.09004 * 109.82813 * 238.77608 * 21 20 19 39 39 H 1.08993 * 109.91034 * 117.83900 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9978 -1.1827 5 1 2.1595 3.0580 -1.2996 6 6 2.8607 1.2600 -2.2312 7 7 3.4696 0.1183 -1.9902 8 14 2.7124 1.8876 -3.9844 9 1 3.3850 3.2068 -4.0964 10 1 3.3564 0.9229 -4.9117 11 1 1.2775 2.0317 -4.3390 12 6 2.1747 2.1028 1.2654 13 6 3.5854 1.8745 1.8118 14 6 3.7488 2.6286 3.1329 15 8 5.0662 2.4148 3.6436 16 6 5.3247 3.0799 4.8817 17 1 4.4190 3.1455 5.4845 18 6 6.4599 2.3666 5.6657 19 6 7.0390 3.5479 6.4843 20 8 6.9560 4.6856 5.6113 21 6 5.9252 4.4811 4.6379 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8417 -0.3970 -2.7230 28 1 1.4426 1.7368 1.9852 29 1 2.0180 3.1684 1.0976 30 1 4.3175 2.2405 1.0919 31 1 3.7420 0.8089 1.9794 32 1 3.0168 2.2630 3.8530 33 1 3.5924 3.6942 2.9649 34 1 6.0589 1.5936 6.3213 35 1 7.2072 1.9550 4.9874 36 1 8.0774 3.3504 6.7507 37 1 6.4442 3.7156 7.3822 38 1 6.3485 4.5324 3.6348 39 1 5.1512 5.2400 4.7519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685976818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:50 Heat of formation + Delta-G solvation = -99.824244 kcal Electronic energy + Delta-G solvation = -17807.662518 eV Core-core repulsion = 14943.082415 eV Total energy + Delta-G solvation = -2864.580103 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63644 -38.59701 -37.73726 -34.26385 -33.05671 -32.09827 -30.49075 -29.62091 -26.93028 -25.04985 -23.54411 -22.90435 -22.50966 -21.45468 -18.69428 -18.24913 -17.59976 -16.87158 -16.66993 -16.30618 -15.97974 -15.62164 -15.41993 -14.80169 -14.32494 -14.16544 -13.97498 -13.88065 -13.28268 -13.21319 -12.84656 -12.70814 -12.53548 -12.46980 -12.40518 -12.15152 -12.04501 -11.76708 -11.67326 -11.49955 -11.37950 -10.62658 -10.51114 -10.48020 -8.60723 -7.82139 -5.39286 1.46769 1.49054 1.55677 2.45410 2.54329 2.99038 3.25976 3.44109 3.70989 3.86234 3.95432 4.11475 4.16686 4.25363 4.34982 4.53972 4.57552 4.65783 4.66267 4.69256 4.76634 4.81434 4.86332 4.91872 4.96777 4.98026 5.06407 5.16349 5.33380 5.51219 5.53288 5.67880 5.90075 5.92066 6.26654 6.47274 7.17977 7.89383 8.39088 9.15347 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.004423 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.024428 B = 6329.028206 C = 6798.810237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.267 4.267 5 H 0.059 0.941 6 C -0.041 4.041 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.120 4.120 14 C 0.073 3.927 15 O -0.396 6.396 16 C 0.049 3.951 17 H 0.100 0.900 18 C -0.152 4.152 19 C 0.050 3.950 20 O -0.404 6.404 21 C 0.027 3.973 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.250 0.750 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 4.557 16.236 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.397 4.397 5 H 0.077 0.923 6 C -0.237 4.237 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.204 1.204 12 C 0.025 3.975 13 C -0.161 4.161 14 C -0.004 4.004 15 O -0.316 6.316 16 C -0.009 4.009 17 H 0.117 0.883 18 C -0.190 4.190 19 C -0.026 4.026 20 O -0.324 6.324 21 C -0.050 4.050 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.266 4.516 16.043 16.715 hybrid contribution 0.005 0.003 -1.216 1.216 sum 1.270 4.519 14.827 15.552 Atomic orbital electron populations 1.22121 0.98028 1.00266 1.00396 1.20896 0.91997 0.85956 1.00320 1.44159 1.74262 1.12229 1.01647 1.19307 1.35313 0.94067 0.91014 0.92308 1.25772 0.97171 0.98322 1.02483 1.70123 1.37728 1.17124 1.31429 0.85505 0.77875 0.77533 0.80544 1.20202 1.21968 1.20407 1.20911 0.92865 0.96227 0.87547 1.21998 1.00323 0.99041 0.94717 1.22589 0.83280 0.99506 0.95022 1.87985 1.33227 1.72163 1.38195 1.23852 0.99639 0.91444 0.85985 0.88257 1.23349 0.97474 0.99202 0.98952 1.23553 1.03038 0.83092 0.92913 1.88382 1.56378 1.42032 1.45587 1.23675 0.90931 0.97650 0.92789 0.92371 0.93111 0.94832 0.91668 0.95930 0.94039 0.92076 0.93266 0.94998 0.94272 0.91236 0.92343 0.87238 0.90784 0.88004 0.89766 0.92082 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 10.24 71.98 0.74 -5.09 16 2 C 0.13 6.39 5.97 86.38 0.52 6.91 16 3 N -0.60 -30.01 2.45 -702.00 -1.72 -31.73 16 4 C -0.27 -14.69 9.49 84.03 0.80 -13.89 16 5 H 0.06 3.20 7.92 -2.91 -0.02 3.18 16 6 C -0.04 -2.28 4.93 84.86 0.42 -1.86 16 7 N -0.92 -54.50 11.32 21.65 0.25 -54.25 16 8 Si 0.96 45.00 29.61 68.60 2.03 47.03 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.15 6.09 5.69 86.38 0.49 6.58 16 13 C -0.12 -4.80 5.91 30.59 0.18 -4.62 16 14 C 0.07 2.16 5.82 71.98 0.42 2.58 16 15 O -0.40 -12.33 10.08 -148.98 -1.50 -13.83 16 16 C 0.05 1.11 3.44 31.85 0.11 1.22 16 17 H 0.10 1.78 7.90 -2.39 -0.02 1.76 16 18 C -0.15 -2.90 6.89 32.05 0.22 -2.68 16 19 C 0.05 0.84 7.78 72.65 0.56 1.41 16 20 O -0.40 -9.86 11.36 -148.98 -1.69 -11.55 16 21 C 0.03 0.63 7.58 72.45 0.55 1.18 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 3.60 5.32 -2.38 -0.01 3.59 16 26 H 0.02 1.03 8.10 -2.39 -0.02 1.01 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 29 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.68 8.05 -2.38 -0.02 1.66 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.33 319.25 3.35 -61.98 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.99 Total: 10.63 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.00 Total: -8.27 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.48 Total: -85.99 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -3.19 Total: -25.38 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.33 3.35 -61.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685976818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.845 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds