Wall clock time and date at job start Mon Mar 30 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00129 * 2 1 4 4 H 1.09003 * 109.61410 * 325.22043 * 3 2 1 5 5 C 1.53175 * 109.54531 * 85.44262 * 3 2 1 6 6 C 1.53093 * 109.16361 * 176.84686 * 5 3 2 7 7 O 1.42905 * 109.41536 * 302.39460 * 6 5 3 8 8 C 1.42909 * 114.15723 * 61.12347 * 7 6 5 9 9 C 1.53091 * 109.41314 * 298.94395 * 8 7 6 10 10 H 1.08996 * 109.51983 * 297.57440 * 9 8 7 11 11 O 1.42899 * 109.52498 * 177.44305 * 9 8 7 12 12 C 1.42903 * 113.99629 * 90.12441 * 11 9 8 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.09001 * 109.47208 * 60.00082 * 1 2 3 24 24 H 1.09006 * 109.47457 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47180 * 300.00159 * 1 2 3 26 26 H 1.00902 * 111.00190 * 123.95684 * 2 1 3 27 27 H 1.08998 * 109.52404 * 296.75638 * 5 3 2 28 28 H 1.09004 * 109.52230 * 56.94570 * 5 3 2 29 29 H 1.09005 * 109.47742 * 62.37371 * 6 5 3 30 30 H 1.09002 * 109.48162 * 182.40879 * 6 5 3 31 31 H 1.08996 * 109.54169 * 178.92108 * 8 7 6 32 32 H 1.09012 * 109.42323 * 58.88529 * 8 7 6 33 33 H 1.09002 * 109.47382 * 59.99956 * 12 11 9 34 34 H 1.09001 * 109.46938 * 299.99942 * 12 11 9 35 35 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3392 2.0152 -0.5857 5 6 2.0720 1.8909 1.4389 6 6 2.6946 3.2895 1.4358 7 8 3.9864 3.2330 0.8274 8 6 3.9732 2.7986 -0.5340 9 6 3.4004 1.3809 -0.6102 10 1 4.0432 0.6981 -0.0548 11 8 3.3307 0.9668 -1.9761 12 6 4.5074 0.3038 -2.4431 13 6 4.3217 -0.0919 -3.9093 14 6 5.5812 -0.8023 -4.4092 15 6 5.3982 -1.1927 -5.8532 16 1 4.4756 -0.9580 -6.3633 17 6 6.4085 -1.8495 -6.5232 18 7 7.5322 -2.1348 -5.9022 19 14 6.1819 -2.3327 -8.3133 20 1 5.9435 -1.1146 -9.1286 21 1 7.4042 -3.0223 -8.7985 22 1 5.0173 -3.2460 -8.4358 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8305 -0.5262 0.7813 27 1 1.0688 1.9397 1.8625 28 1 2.6884 1.2192 2.0364 29 1 2.0567 3.9701 0.8719 30 1 2.7910 3.6468 2.4611 31 1 4.9897 2.8016 -0.9275 32 1 3.3528 3.4735 -1.1239 33 1 4.6826 -0.5901 -1.8445 34 1 5.3620 0.9744 -2.3535 35 1 3.4670 -0.7624 -3.9993 36 1 4.1467 0.8021 -4.5076 37 1 6.4362 -0.1322 -4.3193 38 1 5.7559 -1.6965 -3.8108 39 1 8.2431 -2.5965 -6.3737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686568442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:21 Heat of formation + Delta-G solvation = -107.783787 kcal Electronic energy + Delta-G solvation = -17899.121841 eV Core-core repulsion = 15034.196587 eV Total energy + Delta-G solvation = -2864.925254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93726 -37.21077 -36.17691 -33.80131 -31.70888 -31.43513 -29.92587 -26.53985 -25.96716 -23.56274 -23.22439 -22.51645 -20.80188 -19.94533 -17.04852 -16.56102 -16.35786 -15.80629 -15.64098 -15.06605 -14.86035 -14.44100 -14.38893 -13.85856 -13.39360 -12.95455 -12.86430 -12.49070 -12.12702 -11.98698 -11.85662 -11.50732 -11.39723 -11.23399 -10.84609 -10.60435 -10.52215 -10.20522 -10.13165 -9.66607 -9.38520 -9.06732 -8.95892 -8.47842 -8.30666 -5.96267 -3.98220 3.37249 3.40900 3.43848 3.53484 3.94901 4.05656 4.49984 4.55665 4.63167 4.81037 4.96529 5.01613 5.17635 5.21018 5.30872 5.36513 5.39616 5.47198 5.50583 5.62434 5.76924 5.77489 5.83093 5.90220 6.03208 6.29780 6.75411 6.77459 6.84309 6.97567 7.17050 7.22325 7.67446 7.73761 7.85211 8.03801 8.47111 9.08296 9.65468 11.15318 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036311 B = 0.004103 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.921483 B = 6822.883093 C = 7326.214700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.677 5.677 3 C 0.089 3.911 4 H 0.085 0.915 5 C -0.184 4.184 6 C 0.062 3.938 7 O -0.378 6.378 8 C 0.038 3.962 9 C 0.070 3.930 10 H 0.066 0.934 11 O -0.365 6.365 12 C 0.064 3.936 13 C -0.106 4.106 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.017 0.983 26 H 0.339 0.661 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 8.838 16.254 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.306 5.306 3 C -0.022 4.022 4 H 0.104 0.896 5 C -0.223 4.223 6 C -0.015 4.015 7 O -0.297 6.297 8 C -0.039 4.039 9 C 0.011 3.989 10 H 0.084 0.916 11 O -0.284 6.284 12 C -0.012 4.012 13 C -0.143 4.143 14 C -0.013 4.013 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.035 0.965 26 H 0.157 0.843 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.571 8.734 15.500 21.223 hybrid contribution -0.253 -0.213 -0.008 0.331 sum -11.824 8.521 15.492 21.270 Atomic orbital electron populations 1.22203 0.87683 1.01927 1.00077 1.60320 1.07675 1.12829 1.49734 1.21744 0.96185 0.90350 0.93898 0.89636 1.22984 1.01966 0.98988 0.98376 1.22528 0.85055 0.95251 0.98685 1.87950 1.28300 1.87322 1.26127 1.23195 1.02992 0.95009 0.82746 1.22555 0.95770 0.95088 0.85538 0.91634 1.87965 1.39599 1.76855 1.23986 1.22821 0.86086 0.94824 0.97501 1.21622 1.01470 1.00335 0.90910 1.19042 0.91256 0.95173 0.95869 1.21195 1.01030 1.37017 0.96461 0.92610 1.25022 0.95250 0.95950 0.98251 1.69961 1.05422 1.41482 1.36776 0.86633 0.77384 0.78721 0.85120 1.20228 1.21315 1.20220 0.91531 0.91378 0.96470 0.84270 0.90634 0.90611 0.92972 0.88757 0.88155 0.92253 0.93736 0.94221 0.92514 0.92793 0.96557 0.96497 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.06 0.63 0.92 16 2 N -0.68 -7.85 6.54 -113.81 -0.74 -8.60 16 3 C 0.09 1.01 2.23 -67.53 -0.15 0.86 16 4 H 0.09 1.02 7.80 -51.93 -0.41 0.61 16 5 C -0.18 -1.59 5.40 -26.59 -0.14 -1.74 16 6 C 0.06 0.56 6.84 37.21 0.25 0.81 16 7 O -0.38 -4.59 10.76 -35.23 -0.38 -4.97 16 8 C 0.04 0.48 6.47 37.20 0.24 0.72 16 9 C 0.07 0.96 2.45 -26.59 -0.07 0.90 16 10 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 11 O -0.37 -6.32 9.92 -35.23 -0.35 -6.67 16 12 C 0.06 1.19 5.75 37.16 0.21 1.41 16 13 C -0.11 -2.34 5.52 -26.73 -0.15 -2.49 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.13 7.54 -51.93 -0.39 -0.26 16 26 H 0.34 3.45 8.52 -39.29 -0.33 3.11 16 27 H 0.08 0.54 7.57 -51.93 -0.39 0.15 16 28 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.28 7.94 -51.93 -0.41 0.87 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -31.64 316.60 -7.64 -39.28 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.94 Total: -2.22 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 0.28 Total: -11.98 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.01 Total: -35.23 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.73 Total: -11.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.64 -7.64 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686568442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.501 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds