Wall clock time and date at job start Mon Mar 30 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00129 * 2 1 4 4 H 1.09003 * 109.61410 * 325.22043 * 3 2 1 5 5 C 1.53175 * 109.54531 * 85.44262 * 3 2 1 6 6 C 1.53093 * 109.16361 * 176.84686 * 5 3 2 7 7 O 1.42905 * 109.41536 * 302.39460 * 6 5 3 8 8 C 1.42909 * 114.15723 * 61.12347 * 7 6 5 9 9 C 1.53091 * 109.41314 * 298.94395 * 8 7 6 10 10 H 1.08996 * 109.51983 * 297.57440 * 9 8 7 11 11 O 1.42899 * 109.52498 * 177.44305 * 9 8 7 12 12 C 1.42903 * 113.99629 * 90.12441 * 11 9 8 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.09001 * 109.47208 * 60.00082 * 1 2 3 24 24 H 1.09006 * 109.47457 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47180 * 300.00159 * 1 2 3 26 26 H 1.00902 * 111.00190 * 123.95684 * 2 1 3 27 27 H 1.08998 * 109.52404 * 296.75638 * 5 3 2 28 28 H 1.09004 * 109.52230 * 56.94570 * 5 3 2 29 29 H 1.09005 * 109.47742 * 62.37371 * 6 5 3 30 30 H 1.09002 * 109.48162 * 182.40879 * 6 5 3 31 31 H 1.08996 * 109.54169 * 178.92108 * 8 7 6 32 32 H 1.09012 * 109.42323 * 58.88529 * 8 7 6 33 33 H 1.09002 * 109.47382 * 59.99956 * 12 11 9 34 34 H 1.09001 * 109.46938 * 299.99942 * 12 11 9 35 35 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3392 2.0152 -0.5857 5 6 2.0720 1.8909 1.4389 6 6 2.6946 3.2895 1.4358 7 8 3.9864 3.2330 0.8274 8 6 3.9732 2.7986 -0.5340 9 6 3.4004 1.3809 -0.6102 10 1 4.0432 0.6981 -0.0548 11 8 3.3307 0.9668 -1.9761 12 6 4.5074 0.3038 -2.4431 13 6 4.3217 -0.0919 -3.9093 14 6 5.5812 -0.8023 -4.4092 15 6 5.3982 -1.1927 -5.8532 16 1 4.4756 -0.9580 -6.3633 17 6 6.4085 -1.8495 -6.5232 18 7 7.5322 -2.1348 -5.9022 19 14 6.1819 -2.3327 -8.3133 20 1 5.9435 -1.1146 -9.1286 21 1 7.4042 -3.0223 -8.7985 22 1 5.0173 -3.2460 -8.4358 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8305 -0.5262 0.7813 27 1 1.0688 1.9397 1.8625 28 1 2.6884 1.2192 2.0364 29 1 2.0567 3.9701 0.8719 30 1 2.7910 3.6468 2.4611 31 1 4.9897 2.8016 -0.9275 32 1 3.3528 3.4735 -1.1239 33 1 4.6826 -0.5901 -1.8445 34 1 5.3620 0.9744 -2.3535 35 1 3.4670 -0.7624 -3.9993 36 1 4.1467 0.8021 -4.5076 37 1 6.4362 -0.1322 -4.3193 38 1 5.7559 -1.6965 -3.8108 39 1 8.2431 -2.5965 -6.3737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686568442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:21 Heat of formation + Delta-G solvation = -130.480733 kcal Electronic energy + Delta-G solvation = -17900.106055 eV Core-core repulsion = 15034.196587 eV Total energy + Delta-G solvation = -2865.909468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89151 -38.47536 -37.09027 -35.81131 -33.58269 -32.28495 -31.09414 -28.46441 -26.79011 -25.10031 -24.07024 -23.84817 -22.20660 -21.35237 -18.58232 -18.02886 -17.51866 -17.03982 -16.57128 -16.44659 -16.23227 -15.90933 -15.51764 -14.81343 -14.56264 -14.31576 -14.13072 -13.80024 -13.64094 -13.38504 -12.93972 -12.76346 -12.69904 -12.51350 -12.36589 -12.11976 -12.10621 -11.74216 -11.48158 -11.33917 -11.19209 -11.00656 -10.54783 -10.17776 -9.30452 -8.20056 -6.31262 1.41093 1.44652 1.52634 2.39830 2.53025 2.99286 3.13159 3.17322 3.70426 3.80442 3.92222 4.03216 4.12802 4.20384 4.32274 4.36558 4.48165 4.53457 4.57140 4.60682 4.70024 4.74463 4.83496 4.90619 4.95084 5.00450 5.03844 5.08878 5.19655 5.49944 5.71215 5.83367 6.02202 6.03200 6.22632 6.37717 6.49425 6.84136 7.37770 8.91921 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036311 B = 0.004103 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.921483 B = 6822.883093 C = 7326.214700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.700 5.700 3 C 0.092 3.908 4 H 0.080 0.920 5 C -0.172 4.172 6 C 0.054 3.946 7 O -0.392 6.392 8 C 0.043 3.957 9 C 0.064 3.936 10 H 0.060 0.940 11 O -0.377 6.377 12 C 0.077 3.923 13 C -0.093 4.093 14 C 0.028 3.972 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.346 0.654 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.054 0.946 37 H -0.003 1.003 38 H -0.005 1.005 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 9.347 16.642 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.330 5.330 3 C -0.019 4.019 4 H 0.099 0.901 5 C -0.211 4.211 6 C -0.022 4.022 7 O -0.311 6.311 8 C -0.034 4.034 9 C 0.005 3.995 10 H 0.078 0.922 11 O -0.297 6.297 12 C 0.001 3.999 13 C -0.131 4.131 14 C -0.009 4.009 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.192 1.192 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.165 0.835 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.898 9.255 15.910 22.475 hybrid contribution 0.132 -0.354 -0.048 0.381 sum -12.766 8.901 15.862 22.222 Atomic orbital electron populations 1.22195 0.86456 1.02448 1.00542 1.60278 1.09039 1.13128 1.50569 1.21693 0.94310 0.90500 0.95355 0.90149 1.22891 1.03287 0.98584 0.96324 1.22807 0.83933 0.95689 0.99810 1.87936 1.30378 1.87229 1.25593 1.23051 1.02559 0.94349 0.83483 1.22819 0.97675 0.95473 0.83530 0.92223 1.87915 1.38618 1.76808 1.26332 1.22471 0.87009 0.95170 0.95292 1.21351 0.98817 0.99622 0.93270 1.18918 0.92661 0.94213 0.95102 1.21626 1.01447 1.37587 0.97752 0.92281 1.25981 0.94744 0.95630 1.03338 1.70089 1.06297 1.42015 1.38870 0.85472 0.77721 0.78752 0.78939 1.19124 1.20603 1.19210 0.92564 0.90892 0.94372 0.83538 0.88371 0.90550 0.91989 0.86492 0.88932 0.91859 0.93913 0.93566 0.93055 0.92751 0.98475 0.98688 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.50 127.69 1.34 1.91 16 2 N -0.70 -15.35 6.54 -514.00 -3.36 -18.71 16 3 C 0.09 1.96 2.23 45.04 0.10 2.06 16 4 H 0.08 1.79 7.80 -2.39 -0.02 1.78 16 5 C -0.17 -2.54 5.40 30.68 0.17 -2.38 16 6 C 0.05 0.84 6.84 72.01 0.49 1.33 16 7 O -0.39 -8.95 10.76 -148.98 -1.60 -10.55 16 8 C 0.04 1.06 6.47 72.01 0.47 1.53 16 9 C 0.06 1.72 2.45 30.69 0.08 1.79 16 10 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 11 O -0.38 -12.98 9.92 -148.98 -1.48 -14.46 16 12 C 0.08 2.91 5.75 71.98 0.41 3.32 16 13 C -0.09 -4.17 5.52 30.59 0.17 -4.00 16 14 C 0.03 1.55 4.97 29.85 0.15 1.70 16 15 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 0.05 5.46 84.65 0.46 0.52 16 18 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H 0.06 1.08 8.06 -2.39 -0.02 1.06 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.04 0.50 7.54 -2.39 -0.02 0.48 16 26 H 0.35 6.56 8.52 -89.69 -0.76 5.80 16 27 H 0.10 1.05 7.57 -2.39 -0.02 1.04 16 28 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 2.36 7.94 -2.39 -0.02 2.34 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 34 H 0.05 1.67 7.94 -2.39 -0.02 1.65 16 35 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.48 316.60 0.18 -67.30 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.24 Total: 10.83 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.07 Total: -24.17 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -3.08 Total: -76.03 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -3.08 Total: -25.01 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.48 0.18 -67.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686568442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.177 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds