Wall clock time and date at job start Mon Mar 30 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99526 * 2 1 4 4 H 1.08998 * 109.61358 * 34.78236 * 3 2 1 5 5 C 1.53169 * 109.54770 * 274.55750 * 3 2 1 6 6 C 1.53086 * 109.16578 * 183.15727 * 5 3 2 7 7 O 1.42901 * 109.42115 * 57.60433 * 6 5 3 8 8 C 1.42902 * 114.09753 * 298.84555 * 7 6 5 9 9 C 1.53101 * 109.41374 * 61.15455 * 8 7 6 10 10 H 1.08995 * 109.52048 * 62.35909 * 9 8 7 11 11 O 1.42897 * 109.52332 * 182.48567 * 9 8 7 12 12 C 1.42895 * 114.00212 * 270.00081 * 11 9 8 13 13 H 1.09007 * 109.47243 * 29.99722 * 12 11 9 14 14 C 1.52995 * 109.47300 * 270.00014 * 12 11 9 15 15 C 1.53004 * 109.47520 * 149.99612 * 12 11 9 16 16 C 1.50701 * 109.47211 * 295.00588 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.09009 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47669 * 299.99440 * 1 2 3 26 26 H 1.08997 * 109.47351 * 60.00386 * 1 2 3 27 27 H 1.00898 * 111.00422 * 123.95213 * 2 1 3 28 28 H 1.08997 * 109.52578 * 63.24333 * 5 3 2 29 29 H 1.09006 * 109.57457 * 303.09099 * 5 3 2 30 30 H 1.09012 * 109.47909 * 297.62132 * 6 5 3 31 31 H 1.09000 * 109.49546 * 177.60139 * 6 5 3 32 32 H 1.09002 * 109.48173 * 301.17729 * 8 7 6 33 33 H 1.08997 * 109.49287 * 181.13899 * 8 7 6 34 34 H 1.09004 * 109.46944 * 59.99491 * 14 12 11 35 35 H 1.09001 * 109.47261 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.46927 * 299.99733 * 14 12 11 37 37 H 1.09000 * 109.47211 * 174.99614 * 15 12 11 38 38 H 1.09007 * 109.46376 * 55.00157 * 15 12 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3391 2.0153 0.5857 5 6 2.0719 1.8911 -1.4388 6 6 2.6944 3.2896 -1.4357 7 8 3.9862 3.2333 -0.8274 8 6 3.9716 2.7995 0.5341 9 6 3.4003 1.3811 0.6101 10 1 4.0442 0.6990 0.0550 11 8 3.3307 0.9669 1.9760 12 6 4.5090 0.3078 2.4443 13 1 5.3773 0.6921 1.9091 14 6 4.3834 -1.1971 2.1985 15 6 4.6774 0.5676 3.9427 16 6 4.9237 2.0364 4.1733 17 1 4.9572 2.7164 3.3349 18 6 5.1124 2.5109 5.4539 19 7 5.0719 1.6827 6.4748 20 14 5.4255 4.3302 5.7391 21 1 4.1308 5.0303 5.9370 22 1 6.2714 4.5036 6.9473 23 1 6.1229 4.9033 4.5600 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8306 -0.5261 0.7813 28 1 1.0687 1.9398 -1.8624 29 1 2.6877 1.2196 -2.0373 30 1 2.0564 3.9703 -0.8718 31 1 2.7907 3.6473 -2.4609 32 1 3.3502 3.4736 1.1238 33 1 4.9878 2.8036 0.9281 34 1 4.2635 -1.3821 1.1310 35 1 5.2824 -1.6997 2.5553 36 1 3.5151 -1.5814 2.7337 37 1 5.5246 -0.0063 4.3180 38 1 3.7717 0.2642 4.4680 39 1 5.2051 2.0165 7.3757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:28 Heat of formation + Delta-G solvation = -106.674714 kcal Electronic energy + Delta-G solvation = -18856.795733 eV Core-core repulsion = 15991.918571 eV Total energy + Delta-G solvation = -2864.877161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68089 -37.25616 -35.81528 -33.22648 -31.58237 -31.22785 -29.33294 -27.40853 -25.76153 -23.58937 -23.03643 -22.52841 -20.29743 -19.88390 -16.91743 -16.30202 -16.10287 -15.90906 -15.15420 -15.03565 -14.56449 -14.16645 -13.78768 -13.52672 -13.18842 -12.79911 -12.76314 -12.15642 -11.91882 -11.80059 -11.64569 -11.47094 -11.35223 -11.22750 -10.84861 -10.71969 -10.55077 -10.24087 -10.10285 -9.74416 -9.25170 -9.18904 -8.60892 -8.41169 -8.35416 -5.98741 -3.99360 3.32934 3.39201 3.42273 3.84778 4.19930 4.40202 4.47295 4.80360 5.05022 5.15092 5.29091 5.31912 5.38187 5.41344 5.49423 5.63117 5.66190 5.74748 5.76110 5.85029 5.89196 5.95515 6.01523 6.07719 6.20982 6.29792 6.37283 6.70765 6.89657 7.05761 7.23925 7.45667 7.53609 7.63189 7.98595 8.10158 8.42021 9.04419 9.63271 11.12887 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.007228 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.622908 B = 3872.976549 C = 4539.469223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.088 3.912 4 H 0.053 0.947 5 C -0.140 4.140 6 C 0.058 3.942 7 O -0.381 6.381 8 C 0.043 3.957 9 C 0.057 3.943 10 H 0.068 0.932 11 O -0.359 6.359 12 C 0.091 3.909 13 H 0.048 0.952 14 C -0.173 4.173 15 C 0.024 3.976 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.353 0.647 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.024 0.976 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -1.278 -14.185 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.022 4.022 4 H 0.071 0.929 5 C -0.178 4.178 6 C -0.020 4.020 7 O -0.300 6.300 8 C -0.035 4.035 9 C -0.003 4.003 10 H 0.086 0.914 11 O -0.278 6.278 12 C 0.034 3.966 13 H 0.067 0.933 14 C -0.231 4.231 15 C -0.013 4.013 16 C -0.546 4.546 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.172 0.828 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.260 -1.292 -14.637 15.971 hybrid contribution -0.143 1.105 1.246 1.672 sum -6.402 -0.187 -13.390 14.843 Atomic orbital electron populations 1.22202 0.88270 1.01552 1.00144 1.60495 1.07488 1.13466 1.50606 1.21647 0.95049 0.90296 0.95195 0.92945 1.22222 1.01735 0.97189 0.96679 1.22602 0.85201 0.95724 0.98450 1.87928 1.28242 1.87444 1.26375 1.23165 1.03402 0.94731 0.82178 1.22729 0.95907 0.96083 0.85570 0.91351 1.88012 1.39454 1.76821 1.23526 1.22488 0.85690 0.89293 0.99172 0.93338 1.22359 1.02179 0.98196 1.00359 1.19244 0.97657 0.97335 0.87015 1.21128 1.47893 0.93215 0.92353 0.92649 1.24983 0.95681 0.97537 0.96285 1.69951 1.50657 1.34379 0.98777 0.86638 0.78157 0.85784 0.77707 1.20758 1.21281 1.19860 0.91668 0.95790 0.92169 0.82755 0.90977 0.90333 0.93310 0.88870 0.92124 0.87870 0.93687 0.92051 0.92422 0.95122 0.95722 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.50 60.06 0.63 0.96 16 2 N -0.69 -9.48 6.67 -113.81 -0.76 -10.24 16 3 C 0.09 1.28 2.28 -67.53 -0.15 1.12 16 4 H 0.05 0.81 7.80 -51.93 -0.41 0.41 16 5 C -0.14 -1.69 5.63 -26.60 -0.15 -1.84 16 6 C 0.06 0.70 6.84 37.20 0.25 0.96 16 7 O -0.38 -5.96 10.77 -35.23 -0.38 -6.34 16 8 C 0.04 0.72 6.46 37.21 0.24 0.96 16 9 C 0.06 0.94 2.10 -26.59 -0.06 0.89 16 10 H 0.07 1.13 7.63 -51.93 -0.40 0.74 16 11 O -0.36 -7.15 8.69 -35.23 -0.31 -7.46 16 12 C 0.09 1.85 2.46 -26.73 -0.07 1.78 16 13 H 0.05 0.98 7.65 -51.92 -0.40 0.58 16 14 C -0.17 -2.94 9.52 37.16 0.35 -2.59 16 15 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 16 C -0.51 -14.16 8.88 -34.44 -0.31 -14.47 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 26 H 0.06 0.62 7.54 -51.93 -0.39 0.23 16 27 H 0.35 5.26 7.86 -39.29 -0.31 4.95 16 28 H 0.07 0.75 7.58 -51.93 -0.39 0.36 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.86 7.99 -51.93 -0.42 1.44 16 34 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -29.93 314.50 -7.35 -37.28 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.89 Total: 1.67 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 0.52 Total: -10.24 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.02 Total: -36.43 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.69 Total: -13.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.93 -7.35 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.395 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds