Wall clock time and date at job start Mon Mar 30 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99526 * 2 1 4 4 H 1.08998 * 109.61358 * 34.78236 * 3 2 1 5 5 C 1.53169 * 109.54770 * 274.55750 * 3 2 1 6 6 C 1.53086 * 109.16578 * 183.15727 * 5 3 2 7 7 O 1.42901 * 109.42115 * 57.60433 * 6 5 3 8 8 C 1.42902 * 114.09753 * 298.84555 * 7 6 5 9 9 C 1.53101 * 109.41374 * 61.15455 * 8 7 6 10 10 H 1.08995 * 109.52048 * 62.35909 * 9 8 7 11 11 O 1.42897 * 109.52332 * 182.48567 * 9 8 7 12 12 C 1.42895 * 114.00212 * 270.00081 * 11 9 8 13 13 H 1.09007 * 109.47243 * 29.99722 * 12 11 9 14 14 C 1.52995 * 109.47300 * 270.00014 * 12 11 9 15 15 C 1.53004 * 109.47520 * 149.99612 * 12 11 9 16 16 C 1.50701 * 109.47211 * 295.00588 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.09009 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47669 * 299.99440 * 1 2 3 26 26 H 1.08997 * 109.47351 * 60.00386 * 1 2 3 27 27 H 1.00898 * 111.00422 * 123.95213 * 2 1 3 28 28 H 1.08997 * 109.52578 * 63.24333 * 5 3 2 29 29 H 1.09006 * 109.57457 * 303.09099 * 5 3 2 30 30 H 1.09012 * 109.47909 * 297.62132 * 6 5 3 31 31 H 1.09000 * 109.49546 * 177.60139 * 6 5 3 32 32 H 1.09002 * 109.48173 * 301.17729 * 8 7 6 33 33 H 1.08997 * 109.49287 * 181.13899 * 8 7 6 34 34 H 1.09004 * 109.46944 * 59.99491 * 14 12 11 35 35 H 1.09001 * 109.47261 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.46927 * 299.99733 * 14 12 11 37 37 H 1.09000 * 109.47211 * 174.99614 * 15 12 11 38 38 H 1.09007 * 109.46376 * 55.00157 * 15 12 11 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3391 2.0153 0.5857 5 6 2.0719 1.8911 -1.4388 6 6 2.6944 3.2896 -1.4357 7 8 3.9862 3.2333 -0.8274 8 6 3.9716 2.7995 0.5341 9 6 3.4003 1.3811 0.6101 10 1 4.0442 0.6990 0.0550 11 8 3.3307 0.9669 1.9760 12 6 4.5090 0.3078 2.4443 13 1 5.3773 0.6921 1.9091 14 6 4.3834 -1.1971 2.1985 15 6 4.6774 0.5676 3.9427 16 6 4.9237 2.0364 4.1733 17 1 4.9572 2.7164 3.3349 18 6 5.1124 2.5109 5.4539 19 7 5.0719 1.6827 6.4748 20 14 5.4255 4.3302 5.7391 21 1 4.1308 5.0303 5.9370 22 1 6.2714 4.5036 6.9473 23 1 6.1229 4.9033 4.5600 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8306 -0.5261 0.7813 28 1 1.0687 1.9398 -1.8624 29 1 2.6877 1.2196 -2.0373 30 1 2.0564 3.9703 -0.8718 31 1 2.7907 3.6473 -2.4609 32 1 3.3502 3.4736 1.1238 33 1 4.9878 2.8036 0.9281 34 1 4.2635 -1.3821 1.1310 35 1 5.2824 -1.6997 2.5553 36 1 3.5151 -1.5814 2.7337 37 1 5.5246 -0.0063 4.3180 38 1 3.7717 0.2642 4.4680 39 1 5.2051 2.0165 7.3757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686569165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:28 Heat of formation + Delta-G solvation = -127.830680 kcal Electronic energy + Delta-G solvation = -18857.713124 eV Core-core repulsion = 15991.918571 eV Total energy + Delta-G solvation = -2865.794553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93299 -38.70448 -36.96499 -35.22292 -33.25556 -32.31870 -30.69518 -29.29275 -26.83189 -25.30475 -24.31118 -23.81710 -21.86500 -21.17490 -18.57110 -18.13668 -17.33288 -17.21231 -16.60262 -16.24573 -16.18202 -15.48344 -15.04152 -14.96718 -14.52909 -14.21376 -13.84554 -13.67922 -13.56996 -13.32297 -13.22008 -12.90313 -12.68679 -12.64691 -12.45210 -12.32828 -12.01407 -11.80862 -11.52443 -11.27365 -11.10307 -10.84868 -10.56976 -10.09344 -9.48655 -8.18524 -6.26328 1.38148 1.38590 1.49442 2.40596 2.55856 3.02956 3.15610 3.21984 3.64380 3.86669 4.02734 4.08220 4.19980 4.21630 4.41585 4.42715 4.50761 4.53763 4.57575 4.68537 4.70783 4.76486 4.84373 4.89278 4.99412 5.04796 5.19420 5.22962 5.26524 5.45162 5.51917 5.81315 6.00025 6.09928 6.24034 6.32976 6.55088 6.86659 7.40628 8.93561 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.007228 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.622908 B = 3872.976549 C = 4539.469223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.091 3.909 4 H 0.039 0.961 5 C -0.130 4.130 6 C 0.050 3.950 7 O -0.391 6.391 8 C 0.048 3.952 9 C 0.057 3.943 10 H 0.072 0.928 11 O -0.378 6.378 12 C 0.099 3.901 13 H 0.049 0.951 14 C -0.163 4.163 15 C 0.028 3.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.079 0.921 25 H 0.013 0.987 26 H 0.076 0.924 27 H 0.344 0.656 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.012 0.988 38 H -0.007 1.007 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 -0.694 -16.197 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.019 4.019 4 H 0.057 0.943 5 C -0.168 4.168 6 C -0.026 4.026 7 O -0.310 6.310 8 C -0.030 4.030 9 C -0.001 4.001 10 H 0.090 0.910 11 O -0.297 6.297 12 C 0.042 3.958 13 H 0.067 0.933 14 C -0.220 4.220 15 C -0.009 4.009 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.163 0.837 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.012 0.988 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.884 -0.705 -16.677 18.055 hybrid contribution 0.002 0.921 1.830 2.048 sum -6.882 0.216 -14.847 16.366 Atomic orbital electron populations 1.22292 0.86843 1.02653 1.00424 1.60594 1.08803 1.12672 1.50012 1.21668 0.93157 0.90716 0.96406 0.94302 1.22173 1.03118 0.96778 0.94770 1.22908 0.83844 0.96103 0.99786 1.87913 1.30470 1.87389 1.25273 1.22954 1.02105 0.94806 0.83110 1.22861 0.97685 0.95686 0.83911 0.90994 1.87965 1.38909 1.77111 1.25733 1.22189 0.86184 0.91722 0.95691 0.93310 1.22232 1.02471 0.95314 1.01988 1.19113 0.95284 0.96002 0.90538 1.21519 1.47353 0.94512 0.92588 0.92406 1.25859 0.95516 1.02200 0.96124 1.70076 1.51740 1.36511 0.99228 0.85593 0.78207 0.80207 0.77966 1.20277 1.20666 1.18747 0.90240 0.96792 0.90548 0.83717 0.88585 0.90349 0.92817 0.85871 0.93383 0.89599 0.91216 0.91354 0.92615 0.96943 0.98823 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.50 127.69 1.34 1.91 16 2 N -0.69 -17.74 6.67 -513.99 -3.43 -21.16 16 3 C 0.09 2.49 2.28 45.03 0.10 2.59 16 4 H 0.04 1.17 7.80 -2.39 -0.02 1.15 16 5 C -0.13 -2.77 5.63 30.68 0.17 -2.60 16 6 C 0.05 1.09 6.84 72.01 0.49 1.58 16 7 O -0.39 -11.66 10.77 -148.98 -1.60 -13.26 16 8 C 0.05 1.62 6.46 72.02 0.47 2.09 16 9 C 0.06 1.87 2.10 30.69 0.06 1.94 16 10 H 0.07 2.29 7.63 -2.39 -0.02 2.28 16 11 O -0.38 -15.13 8.69 -148.98 -1.29 -16.42 16 12 C 0.10 4.09 2.46 30.59 0.08 4.16 16 13 H 0.05 1.98 7.65 -2.38 -0.02 1.97 16 14 C -0.16 -5.39 9.52 71.98 0.69 -4.70 16 15 C 0.03 1.46 4.68 29.85 0.14 1.60 16 16 C -0.52 -29.69 8.88 25.60 0.23 -29.46 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 20 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16 26 H 0.08 1.35 7.54 -2.39 -0.02 1.33 16 27 H 0.34 9.83 7.86 -89.70 -0.71 9.13 16 28 H 0.10 1.63 7.58 -2.39 -0.02 1.61 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 3.14 7.99 -2.39 -0.02 3.12 16 34 H 0.07 1.97 7.97 -2.38 -0.02 1.95 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 38 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.70 314.50 0.51 -64.19 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.30 Total: 16.98 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.23 Total: -20.43 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -3.14 Total: -78.12 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -2.90 Total: -29.68 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.70 0.51 -64.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.642 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds