Wall clock time and date at job start Mon Mar 30 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46905 * 109.47201 * 2 1 4 4 C 1.46901 * 110.99904 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.54406 * 324.82371 * 4 3 2 6 6 C 1.53178 * 109.54224 * 85.00075 * 4 3 2 7 7 C 1.53097 * 109.16320 * 176.93397 * 6 4 3 8 8 O 1.42898 * 109.41490 * 302.39102 * 7 6 4 9 9 C 1.42905 * 114.09851 * 61.15689 * 8 7 6 10 10 C 1.53092 * 109.42428 * 298.83405 * 9 8 7 11 11 H 1.08992 * 109.52532 * 297.71405 * 10 9 8 12 12 O 1.42901 * 109.51969 * 177.51717 * 10 9 8 13 13 C 1.42903 * 113.99884 * 90.00907 * 12 10 9 14 14 C 1.52996 * 109.47205 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46974 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00279 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99907 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47207 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47220 * 119.99997 * 19 17 15 22 22 H 1.48501 * 109.46911 * 239.99962 * 19 17 15 23 23 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47321 * 300.00310 * 1 2 3 25 25 H 1.09004 * 109.47278 * 60.00152 * 1 2 3 26 26 H 1.09000 * 109.47321 * 239.99690 * 2 1 3 27 27 H 1.09004 * 109.47278 * 119.99848 * 2 1 3 28 28 H 1.00895 * 110.99496 * 303.94752 * 3 2 1 29 29 H 1.09003 * 109.52669 * 57.03028 * 6 4 3 30 30 H 1.08997 * 109.52447 * 296.83924 * 6 4 3 31 31 H 1.08995 * 109.47859 * 182.40411 * 7 6 4 32 32 H 1.09000 * 109.47425 * 62.37437 * 7 6 4 33 33 H 1.09002 * 109.48053 * 58.82596 * 9 8 7 34 34 H 1.08999 * 109.48097 * 178.85162 * 9 8 7 35 35 H 1.09006 * 109.46359 * 299.99536 * 13 12 10 36 36 H 1.09001 * 109.47345 * 59.99098 * 13 12 10 37 37 H 1.08999 * 109.46874 * 299.99365 * 14 13 12 38 38 H 1.09001 * 109.47596 * 59.99386 * 14 13 12 39 39 H 0.96995 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8747 0.5947 0.5926 6 6 4.0043 1.3119 -1.4372 7 6 5.5306 1.4305 -1.4339 8 8 5.9094 2.6711 -0.8344 9 6 5.4947 2.8125 0.5258 10 6 3.9670 2.7497 0.6014 11 1 3.5399 3.5798 0.0389 12 8 3.5527 2.8329 1.9665 13 6 3.3257 4.1673 2.4248 14 6 2.8883 4.1357 3.8905 15 6 2.6496 5.5430 4.3739 16 1 2.7956 6.3765 3.7029 17 6 2.2447 5.7664 5.6728 18 7 2.0663 4.7513 6.4898 19 14 1.9494 7.5108 6.2721 20 1 2.2188 8.4661 5.1675 21 1 0.5388 7.6501 6.7147 22 1 2.8566 7.8031 7.4109 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9012 -0.7814 29 1 3.5780 2.1131 -2.0410 30 1 3.7148 0.3472 -1.8538 31 1 5.9002 1.3940 -2.4587 32 1 5.9580 0.6057 -0.8636 33 1 5.9217 2.0058 1.1217 34 1 5.8386 3.7717 0.9128 35 1 4.2457 4.7446 2.3321 36 1 2.5440 4.6303 1.8225 37 1 1.9683 3.5585 3.9828 38 1 3.6697 3.6726 4.4931 39 1 1.7811 4.9085 7.4035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686585341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:43 Heat of formation + Delta-G solvation = -107.310614 kcal Electronic energy + Delta-G solvation = -18147.768112 eV Core-core repulsion = 15282.863376 eV Total energy + Delta-G solvation = -2864.904736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77237 -36.89361 -36.36588 -33.21784 -32.41230 -30.64117 -29.35393 -28.42318 -24.70198 -23.89918 -23.06698 -22.02125 -20.87919 -20.19898 -16.95376 -16.37228 -16.18867 -15.68809 -15.47593 -15.00320 -14.70158 -14.32252 -14.17720 -13.99058 -13.41897 -13.04194 -12.62175 -12.24174 -11.97560 -11.91152 -11.75441 -11.48961 -11.33378 -11.05817 -11.01831 -10.86750 -10.51760 -10.43127 -10.10899 -9.73434 -9.42533 -9.12733 -8.69176 -8.31834 -8.26057 -5.98746 -4.01818 3.32923 3.39818 3.44006 3.71653 4.06387 4.26106 4.49807 4.70921 4.79022 4.99682 5.05296 5.14617 5.22943 5.25400 5.37415 5.38523 5.41138 5.55108 5.60272 5.60684 5.77788 5.79604 6.00167 6.03611 6.05924 6.21618 6.35730 6.41449 6.97022 7.05574 7.07451 7.41021 7.63819 7.86955 7.89960 8.19252 8.42179 9.05272 9.61618 11.13001 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.005228 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.589086 B = 5354.871980 C = 6251.154725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 N -0.671 5.671 4 C 0.091 3.909 5 H 0.085 0.915 6 C -0.183 4.183 7 C 0.063 3.937 8 O -0.380 6.380 9 C 0.038 3.962 10 C 0.071 3.929 11 H 0.062 0.938 12 O -0.365 6.365 13 C 0.070 3.930 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.337 0.663 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -9.240 -16.589 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 N -0.301 5.301 4 C -0.020 4.020 5 H 0.103 0.897 6 C -0.223 4.223 7 C -0.015 4.015 8 O -0.299 6.299 9 C -0.039 4.039 10 C 0.011 3.989 11 H 0.080 0.920 12 O -0.284 6.284 13 C -0.005 4.005 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.818 -9.238 -15.682 18.417 hybrid contribution -0.154 0.674 -0.534 0.874 sum 2.664 -8.564 -16.216 18.531 Atomic orbital electron populations 1.21765 0.94976 1.01453 1.02653 1.21924 0.95746 0.89458 1.00049 1.60401 1.06578 1.13396 1.49699 1.21704 0.88131 0.98431 0.93708 0.89728 1.22989 0.97904 1.02791 0.98609 1.22507 0.93374 0.86960 0.98632 1.87935 1.78022 1.37343 1.26577 1.23214 0.95032 1.03216 0.82484 1.22495 0.93069 0.97056 0.86302 0.91987 1.88003 1.87532 1.29531 1.23329 1.22902 0.97537 0.81083 0.99000 1.19044 0.97400 0.97224 0.87368 1.21108 1.46038 0.92187 0.96622 0.92568 1.24989 0.95441 0.97083 0.96778 1.69997 1.46861 1.30135 1.06058 0.86492 0.77834 0.84654 0.78757 1.19712 1.20944 1.20960 0.92428 0.91294 0.93111 0.95979 0.90883 0.84484 0.90748 0.90784 0.88938 0.93038 0.92298 0.88242 0.95117 0.94635 0.95625 0.95951 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.17 37.15 0.38 -1.20 16 2 C 0.06 0.65 6.21 -3.83 -0.02 0.63 16 3 N -0.67 -9.01 6.19 -106.51 -0.66 -9.67 16 4 C 0.09 1.20 2.23 -67.51 -0.15 1.05 16 5 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 6 C -0.18 -1.86 5.39 -26.59 -0.14 -2.00 16 7 C 0.06 0.65 6.84 37.21 0.25 0.90 16 8 O -0.38 -5.16 10.77 -35.23 -0.38 -5.54 16 9 C 0.04 0.55 6.46 37.20 0.24 0.79 16 10 C 0.07 1.13 2.45 -26.58 -0.07 1.06 16 11 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 12 O -0.37 -7.49 9.92 -35.23 -0.35 -7.84 16 13 C 0.07 1.58 5.69 37.16 0.21 1.79 16 14 C 0.03 0.73 5.34 -27.88 -0.15 0.59 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.22 7.51 -51.93 -0.39 -0.17 16 27 H 0.07 0.90 8.06 -51.93 -0.42 0.49 16 28 H 0.34 4.04 8.45 -39.29 -0.33 3.71 16 29 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.07 0.63 7.55 -51.93 -0.39 0.24 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.47 7.93 -51.93 -0.41 1.06 16 35 H 0.03 0.66 7.93 -51.93 -0.41 0.24 16 36 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -31.62 316.76 -7.69 -39.31 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.93 Total: -1.08 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 0.14 Total: -10.20 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.08 Total: -36.27 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.73 Total: -13.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.62 -7.69 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686585341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.002 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds