Wall clock time and date at job start Mon Mar 30 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46905 * 109.47201 * 2 1 4 4 C 1.46901 * 110.99904 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.54406 * 324.82371 * 4 3 2 6 6 C 1.53178 * 109.54224 * 85.00075 * 4 3 2 7 7 C 1.53097 * 109.16320 * 176.93397 * 6 4 3 8 8 O 1.42898 * 109.41490 * 302.39102 * 7 6 4 9 9 C 1.42905 * 114.09851 * 61.15689 * 8 7 6 10 10 C 1.53092 * 109.42428 * 298.83405 * 9 8 7 11 11 H 1.08992 * 109.52532 * 297.71405 * 10 9 8 12 12 O 1.42901 * 109.51969 * 177.51717 * 10 9 8 13 13 C 1.42903 * 113.99884 * 90.00907 * 12 10 9 14 14 C 1.52996 * 109.47205 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46974 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00279 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99907 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47207 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47220 * 119.99997 * 19 17 15 22 22 H 1.48501 * 109.46911 * 239.99962 * 19 17 15 23 23 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47321 * 300.00310 * 1 2 3 25 25 H 1.09004 * 109.47278 * 60.00152 * 1 2 3 26 26 H 1.09000 * 109.47321 * 239.99690 * 2 1 3 27 27 H 1.09004 * 109.47278 * 119.99848 * 2 1 3 28 28 H 1.00895 * 110.99496 * 303.94752 * 3 2 1 29 29 H 1.09003 * 109.52669 * 57.03028 * 6 4 3 30 30 H 1.08997 * 109.52447 * 296.83924 * 6 4 3 31 31 H 1.08995 * 109.47859 * 182.40411 * 7 6 4 32 32 H 1.09000 * 109.47425 * 62.37437 * 7 6 4 33 33 H 1.09002 * 109.48053 * 58.82596 * 9 8 7 34 34 H 1.08999 * 109.48097 * 178.85162 * 9 8 7 35 35 H 1.09006 * 109.46359 * 299.99536 * 13 12 10 36 36 H 1.09001 * 109.47345 * 59.99098 * 13 12 10 37 37 H 1.08999 * 109.46874 * 299.99365 * 14 13 12 38 38 H 1.09001 * 109.47596 * 59.99386 * 14 13 12 39 39 H 0.96995 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8747 0.5947 0.5926 6 6 4.0043 1.3119 -1.4372 7 6 5.5306 1.4305 -1.4339 8 8 5.9094 2.6711 -0.8344 9 6 5.4947 2.8125 0.5258 10 6 3.9670 2.7497 0.6014 11 1 3.5399 3.5798 0.0389 12 8 3.5527 2.8329 1.9665 13 6 3.3257 4.1673 2.4248 14 6 2.8883 4.1357 3.8905 15 6 2.6496 5.5430 4.3739 16 1 2.7956 6.3765 3.7029 17 6 2.2447 5.7664 5.6728 18 7 2.0663 4.7513 6.4898 19 14 1.9494 7.5108 6.2721 20 1 2.2188 8.4661 5.1675 21 1 0.5388 7.6501 6.7147 22 1 2.8566 7.8031 7.4109 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9012 -0.7814 29 1 3.5780 2.1131 -2.0410 30 1 3.7148 0.3472 -1.8538 31 1 5.9002 1.3940 -2.4587 32 1 5.9580 0.6057 -0.8636 33 1 5.9217 2.0058 1.1217 34 1 5.8386 3.7717 0.9128 35 1 4.2457 4.7446 2.3321 36 1 2.5440 4.6303 1.8225 37 1 1.9683 3.5585 3.9828 38 1 3.6697 3.6726 4.4931 39 1 1.7811 4.9085 7.4035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686585341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:42 Heat of formation + Delta-G solvation = -130.192598 kcal Electronic energy + Delta-G solvation = -18148.760349 eV Core-core repulsion = 15282.863376 eV Total energy + Delta-G solvation = -2865.896973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87803 -38.33939 -37.43744 -35.34774 -33.43980 -32.24629 -30.81471 -29.53803 -26.70479 -24.96534 -24.14813 -23.07642 -22.72575 -21.36438 -18.76536 -17.74536 -17.46593 -16.88514 -16.67782 -16.56224 -16.11797 -15.75899 -15.50470 -15.04968 -14.54044 -14.34145 -14.13343 -13.95350 -13.37598 -12.99480 -12.84418 -12.76360 -12.71117 -12.53559 -12.38750 -12.29459 -12.10600 -11.90927 -11.47236 -11.38834 -11.25131 -11.00590 -10.59487 -10.10677 -9.25662 -8.22625 -6.35680 1.41285 1.42549 1.56120 2.37304 2.62788 3.02446 3.11173 3.15826 3.73004 3.82402 3.97013 4.04632 4.13398 4.22326 4.34570 4.38400 4.45030 4.48387 4.52255 4.59750 4.69386 4.75799 4.80788 4.90866 4.98069 5.01041 5.09485 5.12787 5.33445 5.38743 5.60664 5.73674 6.04666 6.08742 6.16077 6.45369 6.56919 6.80488 7.34072 8.90755 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.005228 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.589086 B = 5354.871980 C = 6251.154725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 N -0.696 5.696 4 C 0.094 3.906 5 H 0.075 0.925 6 C -0.170 4.170 7 C 0.054 3.946 8 O -0.390 6.390 9 C 0.045 3.955 10 C 0.064 3.936 11 H 0.059 0.941 12 O -0.385 6.385 13 C 0.090 3.910 14 C 0.032 3.968 15 C -0.544 4.544 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.974 3.026 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.344 0.656 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.038 0.962 37 H -0.009 1.009 38 H -0.007 1.007 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -8.815 -18.392 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 N -0.327 5.327 4 C -0.017 4.017 5 H 0.094 0.906 6 C -0.209 4.209 7 C -0.022 4.022 8 O -0.309 6.309 9 C -0.033 4.033 10 C 0.005 3.995 11 H 0.077 0.923 12 O -0.305 6.305 13 C 0.014 3.986 14 C -0.005 4.005 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.201 1.201 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.009 0.991 38 H 0.012 0.988 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.035 -8.827 -17.516 19.848 hybrid contribution -0.214 0.437 -0.022 0.487 sum 2.821 -8.390 -17.538 19.646 Atomic orbital electron populations 1.21738 0.94414 1.02407 1.01899 1.21925 0.96174 0.88482 1.00404 1.60342 1.06844 1.14896 1.50630 1.21644 0.88306 0.96230 0.95475 0.90638 1.22887 0.97631 1.04281 0.96109 1.22812 0.93562 0.85896 0.99962 1.87926 1.78092 1.39226 1.25675 1.23017 0.93807 1.02945 0.83483 1.22810 0.94205 0.98773 0.83751 0.92259 1.87952 1.88029 1.28102 1.26399 1.22444 0.97924 0.82430 0.95835 1.18885 0.94851 0.96248 0.90531 1.21502 1.46422 0.92898 0.97385 0.91589 1.26038 0.94715 1.02138 0.96857 1.70139 1.47487 1.32975 1.06630 0.85264 0.77928 0.78573 0.78445 1.18273 1.20210 1.20138 0.90647 0.93917 0.91924 0.93449 0.92507 0.83644 0.90404 0.88330 0.86212 0.92172 0.92244 0.88992 0.93962 0.94336 0.99053 0.98843 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 10.17 71.98 0.73 -2.20 16 2 C 0.06 1.27 6.21 86.30 0.54 1.81 16 3 N -0.70 -18.18 6.19 -490.90 -3.04 -21.22 16 4 C 0.09 2.39 2.23 45.04 0.10 2.49 16 5 H 0.08 2.05 7.81 -2.39 -0.02 2.03 16 6 C -0.17 -2.97 5.39 30.69 0.17 -2.81 16 7 C 0.05 0.97 6.84 72.01 0.49 1.46 16 8 O -0.39 -9.90 10.77 -148.98 -1.60 -11.51 16 9 C 0.05 1.29 6.46 72.01 0.47 1.76 16 10 C 0.06 2.01 2.45 30.69 0.08 2.09 16 11 H 0.06 1.89 7.79 -2.39 -0.02 1.88 16 12 O -0.39 -16.21 9.92 -148.98 -1.48 -17.69 16 13 C 0.09 4.12 5.69 71.98 0.41 4.53 16 14 C 0.03 1.83 5.34 29.85 0.16 1.99 16 15 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 19 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.79 7.51 -2.39 -0.02 0.78 16 27 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 28 H 0.34 7.83 8.45 -89.70 -0.76 7.07 16 29 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.10 1.30 7.55 -2.39 -0.02 1.28 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.71 7.93 -2.39 -0.02 2.69 16 35 H 0.04 1.82 7.93 -2.38 -0.02 1.80 16 36 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.29 316.76 0.27 -69.02 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.25 Total: 12.88 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.83 Total: -20.20 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.75 Total: -79.35 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -3.08 Total: -29.19 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.29 0.27 -69.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686585341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.174 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds