Wall clock time and date at job start Mon Mar 30 2020 03:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47193 * 2 1 4 4 C 1.46894 * 111.00157 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.61577 * 325.21807 * 4 3 2 6 6 C 1.53184 * 109.54721 * 85.44256 * 4 3 2 7 7 C 1.53092 * 109.16425 * 176.85004 * 6 4 3 8 8 O 1.42908 * 109.41252 * 302.39248 * 7 6 4 9 9 C 1.42899 * 114.10363 * 61.15703 * 8 7 6 10 10 C 1.53100 * 109.41339 * 298.84648 * 9 8 7 11 11 H 1.09001 * 109.51845 * 177.57355 * 10 9 8 12 12 O 1.42895 * 109.52087 * 297.69932 * 10 9 8 13 13 C 1.42904 * 113.99914 * 270.00417 * 12 10 9 14 14 C 1.53001 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.08992 * 109.47327 * 59.99853 * 1 2 3 24 24 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46941 * 300.00022 * 1 2 3 26 26 H 1.08998 * 109.46941 * 239.99977 * 2 1 3 27 27 H 1.08997 * 109.47269 * 119.99668 * 2 1 3 28 28 H 1.00901 * 110.99617 * 303.95619 * 3 2 1 29 29 H 1.08996 * 109.52034 * 56.94322 * 6 4 3 30 30 H 1.09001 * 109.56791 * 296.78378 * 6 4 3 31 31 H 1.08994 * 109.47936 * 182.40689 * 7 6 4 32 32 H 1.09004 * 109.47959 * 62.37237 * 7 6 4 33 33 H 1.08989 * 109.48537 * 178.86050 * 9 8 7 34 34 H 1.09004 * 109.48604 * 58.82682 * 9 8 7 35 35 H 1.09002 * 109.47155 * 59.99999 * 13 12 10 36 36 H 1.08998 * 109.46998 * 299.99564 * 13 12 10 37 37 H 1.09007 * 109.46922 * 59.99502 * 14 13 12 38 38 H 1.09003 * 109.46836 * 300.00257 * 14 13 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8767 0.5909 0.5848 6 6 4.0029 1.3235 -1.4398 7 6 5.5290 1.4442 -1.4373 8 8 5.9067 2.6809 -0.8288 9 6 5.4933 2.8116 0.5328 10 6 3.9656 2.7456 0.6094 11 1 3.6505 2.8019 1.6514 12 8 3.4034 3.8387 -0.1192 13 6 3.1974 5.0154 0.6651 14 6 2.5957 6.1146 -0.2128 15 6 2.3779 7.3552 0.6144 16 1 2.6425 7.3595 1.6615 17 6 1.8408 8.4850 0.0345 18 7 1.5190 8.4800 -1.2406 19 14 1.5701 10.0226 1.0602 20 1 0.2115 9.9859 1.6584 21 1 2.5859 10.0813 2.1419 22 1 1.6980 11.2231 0.1955 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6441 1.9013 -0.7814 29 1 3.5748 2.1285 -2.0370 30 1 3.7143 0.3619 -1.8643 31 1 5.8976 1.4160 -2.4627 32 1 5.9583 0.6158 -0.8737 33 1 5.8360 3.7683 0.9266 34 1 5.9221 2.0011 1.1223 35 1 4.1514 5.3547 1.0687 36 1 2.5152 4.7907 1.4850 37 1 1.6418 5.7755 -0.6168 38 1 3.2782 6.3392 -1.0325 39 1 1.1408 9.2747 -1.6485 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686585342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:45 Heat of formation + Delta-G solvation = -106.527067 kcal Electronic energy + Delta-G solvation = -18330.088070 eV Core-core repulsion = 15465.217311 eV Total energy + Delta-G solvation = -2864.870759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71587 -36.60371 -36.29690 -33.19255 -32.30341 -30.59136 -29.36722 -28.45697 -24.64877 -23.80299 -23.22952 -21.99249 -20.77713 -19.95277 -16.63194 -16.48233 -15.91682 -15.72746 -15.38881 -15.06084 -14.69374 -14.44602 -14.09235 -13.86469 -13.43917 -12.81971 -12.60073 -12.20636 -11.89418 -11.84757 -11.82150 -11.35593 -11.24708 -11.06442 -10.98340 -10.67598 -10.52016 -10.40638 -10.17876 -9.61755 -9.38616 -9.13022 -8.60226 -8.31152 -8.24732 -5.97863 -4.00782 3.34378 3.40036 3.43403 3.92624 4.14768 4.35516 4.55954 4.81603 4.84708 5.00410 5.04417 5.17653 5.24003 5.34603 5.38248 5.38343 5.50831 5.53714 5.65736 5.70636 5.81565 5.87724 5.95081 6.05869 6.15113 6.26472 6.40212 6.42491 6.99585 7.07581 7.29710 7.48304 7.64688 7.88390 7.91047 8.20927 8.43502 9.06012 9.62456 11.13875 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.005481 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.386290 B = 5107.752203 C = 5852.097471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.678 5.678 4 C 0.094 3.906 5 H 0.080 0.920 6 C -0.182 4.182 7 C 0.067 3.933 8 O -0.368 6.368 9 C 0.040 3.960 10 C 0.066 3.934 11 H 0.069 0.931 12 O -0.367 6.367 13 C 0.071 3.929 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.274 1.274 22 H -0.286 1.286 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.066 0.934 28 H 0.354 0.646 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -18.130 2.110 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.310 5.310 4 C -0.016 4.016 5 H 0.098 0.902 6 C -0.221 4.221 7 C -0.011 4.011 8 O -0.286 6.286 9 C -0.038 4.038 10 C 0.006 3.994 11 H 0.087 0.913 12 O -0.286 6.286 13 C -0.005 4.005 14 C -0.009 4.009 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.212 1.212 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.049 -17.809 2.362 18.416 hybrid contribution -0.103 0.409 0.015 0.422 sum 3.946 -17.400 2.377 18.000 Atomic orbital electron populations 1.21762 0.94968 1.01317 1.02823 1.21942 0.95799 0.89973 0.99836 1.60482 1.06526 1.12575 1.51385 1.21638 0.88459 0.96378 0.95129 0.90182 1.22865 0.97777 1.02597 0.98909 1.22452 0.93645 0.86571 0.98431 1.87996 1.77593 1.37353 1.25707 1.23169 0.94836 1.02215 0.83565 1.22620 0.92167 0.88136 0.96488 0.91347 1.87965 1.82379 1.21333 1.36932 1.22874 0.97785 0.84890 0.94901 1.19026 0.96426 0.90349 0.95129 1.21069 1.42029 0.96770 0.96109 0.92656 1.24987 0.95524 0.98814 0.94950 1.69986 1.43010 1.29197 1.10879 0.86548 0.78547 0.82556 0.80065 1.20620 1.19858 1.21172 0.92642 0.92515 0.91689 0.95725 0.91506 0.82640 0.89496 0.91744 0.89144 0.93867 0.88404 0.93136 0.95162 0.94709 0.95864 0.95865 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.13 16 2 C 0.05 0.57 6.21 -3.82 -0.02 0.55 16 3 N -0.68 -9.17 6.08 -106.53 -0.65 -9.81 16 4 C 0.09 1.23 2.34 -67.53 -0.16 1.08 16 5 H 0.08 0.91 7.80 -51.93 -0.41 0.50 16 6 C -0.18 -2.28 5.24 -26.59 -0.14 -2.42 16 7 C 0.07 0.81 6.84 37.21 0.25 1.07 16 8 O -0.37 -5.85 10.69 -42.72 -0.46 -6.31 16 9 C 0.04 0.57 6.49 37.21 0.24 0.81 16 10 C 0.07 1.02 2.64 -26.59 -0.07 0.95 16 11 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 12 O -0.37 -7.40 9.19 -42.72 -0.39 -7.79 16 13 C 0.07 1.59 5.69 37.16 0.21 1.80 16 14 C 0.03 0.76 5.34 -27.89 -0.15 0.61 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.24 7.54 -51.93 -0.39 -0.15 16 27 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.35 5.22 8.41 -39.29 -0.33 4.89 16 29 H 0.09 1.32 7.77 -51.93 -0.40 0.92 16 30 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.45 7.83 -51.94 -0.41 1.04 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 36 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -31.61 315.52 -7.80 -39.41 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.90 Total: 0.00 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 0.13 Total: -10.50 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.09 Total: -36.47 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.85 Total: -14.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.61 -7.80 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686585342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.118 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds