Wall clock time and date at job start Mon Mar 30 2020 03:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47193 * 2 1 4 4 C 1.46894 * 111.00157 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.61577 * 325.21807 * 4 3 2 6 6 C 1.53184 * 109.54721 * 85.44256 * 4 3 2 7 7 C 1.53092 * 109.16425 * 176.85004 * 6 4 3 8 8 O 1.42908 * 109.41252 * 302.39248 * 7 6 4 9 9 C 1.42899 * 114.10363 * 61.15703 * 8 7 6 10 10 C 1.53100 * 109.41339 * 298.84648 * 9 8 7 11 11 H 1.09001 * 109.51845 * 177.57355 * 10 9 8 12 12 O 1.42895 * 109.52087 * 297.69932 * 10 9 8 13 13 C 1.42904 * 113.99914 * 270.00417 * 12 10 9 14 14 C 1.53001 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.08992 * 109.47327 * 59.99853 * 1 2 3 24 24 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46941 * 300.00022 * 1 2 3 26 26 H 1.08998 * 109.46941 * 239.99977 * 2 1 3 27 27 H 1.08997 * 109.47269 * 119.99668 * 2 1 3 28 28 H 1.00901 * 110.99617 * 303.95619 * 3 2 1 29 29 H 1.08996 * 109.52034 * 56.94322 * 6 4 3 30 30 H 1.09001 * 109.56791 * 296.78378 * 6 4 3 31 31 H 1.08994 * 109.47936 * 182.40689 * 7 6 4 32 32 H 1.09004 * 109.47959 * 62.37237 * 7 6 4 33 33 H 1.08989 * 109.48537 * 178.86050 * 9 8 7 34 34 H 1.09004 * 109.48604 * 58.82682 * 9 8 7 35 35 H 1.09002 * 109.47155 * 59.99999 * 13 12 10 36 36 H 1.08998 * 109.46998 * 299.99564 * 13 12 10 37 37 H 1.09007 * 109.46922 * 59.99502 * 14 13 12 38 38 H 1.09003 * 109.46836 * 300.00257 * 14 13 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8767 0.5909 0.5848 6 6 4.0029 1.3235 -1.4398 7 6 5.5290 1.4442 -1.4373 8 8 5.9067 2.6809 -0.8288 9 6 5.4933 2.8116 0.5328 10 6 3.9656 2.7456 0.6094 11 1 3.6505 2.8019 1.6514 12 8 3.4034 3.8387 -0.1192 13 6 3.1974 5.0154 0.6651 14 6 2.5957 6.1146 -0.2128 15 6 2.3779 7.3552 0.6144 16 1 2.6425 7.3595 1.6615 17 6 1.8408 8.4850 0.0345 18 7 1.5190 8.4800 -1.2406 19 14 1.5701 10.0226 1.0602 20 1 0.2115 9.9859 1.6584 21 1 2.5859 10.0813 2.1419 22 1 1.6980 11.2231 0.1955 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6441 1.9013 -0.7814 29 1 3.5748 2.1285 -2.0370 30 1 3.7143 0.3619 -1.8643 31 1 5.8976 1.4160 -2.4627 32 1 5.9583 0.6158 -0.8737 33 1 5.8360 3.7683 0.9266 34 1 5.9221 2.0011 1.1223 35 1 4.1514 5.3547 1.0687 36 1 2.5152 4.7907 1.4850 37 1 1.6418 5.7755 -0.6168 38 1 3.2782 6.3392 -1.0325 39 1 1.1408 9.2747 -1.6485 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686585342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:45 Heat of formation + Delta-G solvation = -129.112859 kcal Electronic energy + Delta-G solvation = -18331.067464 eV Core-core repulsion = 15465.217311 eV Total energy + Delta-G solvation = -2865.850152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86579 -38.04395 -37.36794 -35.31577 -33.37941 -32.15182 -30.92089 -29.52367 -26.67215 -24.89427 -24.30933 -22.86660 -22.80943 -21.10775 -18.62557 -17.61584 -17.35329 -16.88435 -16.66838 -16.55661 -16.07077 -15.80667 -15.33756 -15.17778 -14.59451 -14.32480 -14.10960 -13.67472 -13.27594 -13.03783 -12.82507 -12.70983 -12.70133 -12.44129 -12.34849 -12.25966 -12.11514 -11.68602 -11.51805 -11.35525 -11.31972 -10.93244 -10.57672 -9.95974 -9.27478 -8.22402 -6.35401 1.40834 1.43642 1.54712 2.38608 2.81941 3.07390 3.11337 3.22979 3.79322 3.80660 3.95804 4.12884 4.25032 4.35705 4.37871 4.43455 4.47802 4.51854 4.53399 4.59329 4.66667 4.74106 4.86368 4.95343 5.00194 5.05420 5.12898 5.23087 5.33520 5.39379 5.62078 5.74791 6.10370 6.16379 6.26886 6.38888 6.59283 6.80817 7.34238 8.90784 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.005481 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.386290 B = 5107.752203 C = 5852.097471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 N -0.696 5.696 4 C 0.098 3.902 5 H 0.110 0.890 6 C -0.175 4.175 7 C 0.061 3.939 8 O -0.401 6.401 9 C 0.040 3.960 10 C 0.055 3.945 11 H 0.072 0.928 12 O -0.386 6.386 13 C 0.091 3.909 14 C 0.034 3.966 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.260 1.260 22 H -0.281 1.281 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.341 0.659 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.040 0.960 37 H -0.008 1.008 38 H -0.012 1.012 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -19.411 3.642 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.326 5.326 4 C -0.012 4.012 5 H 0.127 0.873 6 C -0.214 4.214 7 C -0.016 4.016 8 O -0.320 6.320 9 C -0.037 4.037 10 C -0.004 4.004 11 H 0.090 0.910 12 O -0.306 6.306 13 C 0.015 3.985 14 C -0.004 4.004 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.184 1.184 22 H -0.206 1.206 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.010 0.990 38 H 0.007 0.993 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.633 -19.126 3.906 20.063 hybrid contribution -0.281 0.706 -0.516 0.918 sum 4.352 -18.420 3.391 19.229 Atomic orbital electron populations 1.21755 0.94805 1.02377 1.01742 1.22016 0.95955 0.88472 1.00917 1.60506 1.06905 1.14307 1.50925 1.21678 0.88367 0.95563 0.95621 0.87259 1.22784 0.98013 1.02484 0.98162 1.22686 0.93341 0.86213 0.99322 1.87952 1.77937 1.39530 1.26566 1.23192 0.93702 1.03154 0.83642 1.23003 0.93233 0.87667 0.96496 0.91024 1.87927 1.83173 1.21751 1.37709 1.22386 0.97689 0.84752 0.93646 1.18861 0.94347 0.92291 0.94862 1.21483 1.42398 0.97619 0.96773 0.91599 1.26048 0.94797 1.02727 0.96225 1.70136 1.43656 1.30499 1.12973 0.85313 0.79040 0.77490 0.78375 1.19504 1.18411 1.20619 0.93519 0.90361 0.92980 0.94488 0.90281 0.84073 0.93153 0.89231 0.88318 0.90712 0.89661 0.89340 0.94446 0.94198 0.98956 0.99328 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.17 71.98 0.73 -2.06 16 2 C 0.05 1.05 6.21 86.30 0.54 1.59 16 3 N -0.70 -18.18 6.08 -490.96 -2.98 -21.16 16 4 C 0.10 2.38 2.34 45.04 0.11 2.48 16 5 H 0.11 2.05 7.80 -2.39 -0.02 2.03 16 6 C -0.18 -4.13 5.24 30.69 0.16 -3.97 16 7 C 0.06 1.37 6.84 72.01 0.49 1.86 16 8 O -0.40 -12.33 10.69 -141.82 -1.52 -13.85 16 9 C 0.04 1.10 6.49 72.02 0.47 1.56 16 10 C 0.05 1.66 2.64 30.69 0.08 1.74 16 11 H 0.07 2.11 7.79 -2.39 -0.02 2.09 16 12 O -0.39 -15.96 9.19 -141.82 -1.30 -17.27 16 13 C 0.09 4.19 5.69 71.98 0.41 4.60 16 14 C 0.03 1.93 5.34 29.85 0.16 2.09 16 15 C -0.54 -32.22 9.11 25.60 0.23 -31.99 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.93 -58.77 13.29 21.45 0.28 -58.49 16 19 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 0.63 7.54 -2.39 -0.02 0.61 16 27 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 28 H 0.34 10.27 8.41 -89.69 -0.75 9.51 16 29 H 0.05 1.56 7.77 -2.39 -0.02 1.54 16 30 H 0.09 1.64 7.58 -2.39 -0.02 1.62 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 2.48 7.83 -2.39 -0.02 2.46 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.64 7.83 -2.39 -0.02 1.62 16 36 H 0.04 1.76 8.09 -2.39 -0.02 1.75 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -70.15 315.52 0.60 -69.55 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.25 Total: 15.82 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.84 Total: -21.63 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.70 Total: -79.65 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -2.82 Total: -31.11 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.15 0.60 -69.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686585342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.562 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds