Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99879 * 2 1 4 4 C 1.53002 * 109.47191 * 198.59027 * 3 2 1 5 5 C 1.53001 * 109.47200 * 174.99809 * 4 3 2 6 6 N 1.46899 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99925 * 190.00158 * 6 5 4 8 8 C 1.50699 * 109.47142 * 161.20967 * 7 6 5 9 9 H 1.07996 * 120.00234 * 354.39766 * 8 7 6 10 10 C 1.37876 * 120.00022 * 174.39952 * 8 7 6 11 11 N 1.31516 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99943 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47411 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47136 * 120.00112 * 12 10 8 15 15 H 1.48502 * 109.46945 * 239.99780 * 12 10 8 16 16 C 1.46901 * 110.99880 * 66.04768 * 6 5 4 17 17 C 1.52999 * 117.49781 * 261.20130 * 16 6 5 18 18 C 1.52998 * 117.49250 * 192.54438 * 16 6 5 19 19 O 1.42896 * 109.47063 * 78.58862 * 3 2 1 20 20 C 1.42895 * 114.00365 * 284.43202 * 19 3 2 21 21 H 1.09000 * 109.47091 * 185.45132 * 1 2 3 22 22 H 1.08995 * 109.47407 * 305.45588 * 1 2 3 23 23 H 1.09005 * 109.46959 * 65.45775 * 1 2 3 24 24 H 1.09004 * 109.47089 * 318.59356 * 3 2 1 25 25 H 1.08997 * 109.47105 * 54.99905 * 4 3 2 26 26 H 1.08995 * 109.46848 * 295.00113 * 4 3 2 27 27 H 1.08997 * 109.47013 * 60.00039 * 5 4 3 28 28 H 1.09002 * 109.47049 * 300.00449 * 5 4 3 29 29 H 1.08998 * 109.47242 * 281.21050 * 7 6 5 30 30 H 1.09004 * 109.47084 * 41.20871 * 7 6 5 31 31 H 0.97005 * 120.00369 * 180.02562 * 11 10 8 32 32 H 1.08997 * 115.55093 * 46.87605 * 16 6 5 33 33 H 1.09000 * 117.49866 * 0.02562 * 17 16 6 34 34 H 1.08996 * 117.49720 * 145.02003 * 17 16 6 35 35 H 1.09007 * 117.49774 * 214.97604 * 18 16 6 36 36 H 1.08998 * 117.50681 * 359.97438 * 18 16 6 37 37 H 1.08998 * 109.47365 * 76.71968 * 20 19 3 38 38 H 1.09005 * 109.47541 * 196.72190 * 20 19 3 39 39 H 1.09003 * 109.47114 * 316.71861 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4666 1.2153 -0.4599 5 6 4.0518 2.6240 -0.5797 6 7 5.4500 2.5374 -1.0218 7 6 6.1156 3.8431 -0.9216 8 6 7.6097 3.6472 -0.9284 9 1 8.0237 2.6499 -0.9085 10 6 8.4484 4.7411 -0.9598 11 7 7.9444 5.9556 -0.9834 12 14 10.3005 4.4981 -0.9689 13 1 10.6094 3.0460 -0.9378 14 1 10.8726 5.1001 -2.1999 15 1 10.8918 5.1552 0.2243 16 6 5.5381 2.0050 -2.3881 17 6 5.8652 0.5190 -2.5475 18 6 6.9177 1.5759 -2.8913 19 8 1.9604 1.8490 1.3206 20 6 0.6637 2.3027 1.7140 21 1 -0.3633 -1.0230 0.0976 22 1 -0.3634 0.5961 0.8370 23 1 -0.3633 0.4269 -0.9349 24 1 1.4538 1.9509 -0.6797 25 1 3.5114 0.7196 -1.4296 26 1 4.0425 0.6433 0.2675 27 1 4.0070 3.1197 0.3900 28 1 3.4758 3.1960 -1.3071 29 1 5.8267 4.4642 -1.7695 30 1 5.8175 4.3327 0.0056 31 1 8.5343 6.7253 -1.0059 32 1 4.8547 2.4503 -3.1111 33 1 6.0147 -0.0638 -1.6386 34 1 5.3973 -0.0133 -3.3756 35 1 7.1418 1.7385 -3.9457 36 1 7.7601 1.6890 -2.2089 37 1 0.0410 1.4454 1.9699 38 1 0.7551 2.9571 2.5810 39 1 0.2057 2.8516 0.8912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686608617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -55.407787 kcal Electronic energy + Delta-G solvation = -18240.356245 eV Core-core repulsion = 15377.702185 eV Total energy + Delta-G solvation = -2862.654061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33771 -37.67555 -35.94467 -33.88005 -32.82913 -31.00248 -27.99036 -26.35935 -26.04395 -23.72418 -22.20473 -21.54745 -21.15316 -19.37526 -17.40851 -17.27695 -16.41944 -15.79119 -14.87798 -14.73664 -14.57961 -14.42983 -14.05536 -13.54700 -13.30984 -12.89018 -12.68629 -12.39846 -12.00031 -11.66242 -11.46056 -11.27229 -10.96065 -10.83082 -10.69598 -10.65034 -10.40101 -10.01222 -9.86313 -9.78247 -9.47178 -9.07119 -9.05845 -8.35365 -7.24728 -5.96738 -3.96149 3.34342 3.41898 3.46106 3.53889 3.80879 4.46151 4.63736 4.70021 4.86554 4.91091 5.09046 5.13748 5.29426 5.34379 5.38941 5.48784 5.61647 5.69464 5.71105 5.73060 5.81859 6.11915 6.17380 6.25002 6.37889 6.52558 6.61243 6.77657 7.02568 7.08575 7.10279 7.28554 7.43203 7.91394 8.16969 8.26062 8.60115 9.10371 9.66325 11.14123 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.005290 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.185933 B = 5292.026454 C = 5895.998359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.393 6.393 3 C 0.245 3.755 4 C -0.096 4.096 5 C 0.067 3.933 6 N -0.509 5.509 7 C 0.195 3.805 8 C -0.496 4.496 9 H 0.069 0.931 10 C 0.053 3.947 11 N -0.901 5.901 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.024 3.976 17 C -0.186 4.186 18 C -0.157 4.157 19 O -0.385 6.385 20 C 0.019 3.981 21 H 0.085 0.915 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.018 0.982 29 H -0.003 1.003 30 H 0.026 0.974 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 -8.747 0.037 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.314 6.314 3 C 0.150 3.850 4 C -0.134 4.134 5 C -0.062 4.062 6 N -0.234 5.234 7 C 0.071 3.929 8 C -0.534 4.534 9 H 0.087 0.913 10 C -0.148 4.148 11 N -0.542 5.542 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.086 4.086 17 C -0.224 4.224 18 C -0.194 4.194 19 O -0.305 6.305 20 C -0.077 4.077 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.602 -9.017 0.463 16.326 hybrid contribution -0.059 0.898 -0.711 1.147 sum -13.661 -8.119 -0.248 15.893 Atomic orbital electron populations 1.23174 0.81729 1.03230 1.00429 1.88052 1.19356 1.30073 1.93870 1.23576 0.96365 0.81565 0.83513 1.21473 0.89983 0.99552 1.02383 1.21889 0.89923 0.94089 1.00291 1.61867 1.11684 1.30317 1.19529 1.19722 0.94113 0.82984 0.96098 1.21288 0.90407 0.92868 1.48885 0.91274 1.24982 0.98835 0.95173 0.95775 1.69971 1.34845 0.97703 1.51643 0.86502 0.85597 0.78292 0.77415 1.19601 1.21217 1.21144 1.22072 0.99627 0.95606 0.91263 1.23056 1.05124 0.92020 1.02201 1.23169 0.94392 1.00996 1.00835 1.88127 1.29448 1.78938 1.33969 1.23068 0.85529 0.98588 1.00512 0.89670 0.92829 0.94096 0.93025 0.89733 0.89604 0.90393 0.96337 0.98503 0.95635 0.93130 0.91524 0.88877 0.90323 0.90295 0.86265 0.93330 0.89658 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.69 101.05 1.08 1.18 16 2 O -0.39 -5.51 10.59 -59.04 -0.63 -6.14 16 3 C 0.25 3.52 2.86 37.16 0.11 3.62 16 4 C -0.10 -1.55 5.13 -26.73 -0.14 -1.69 16 5 C 0.07 1.25 4.84 -3.82 -0.02 1.23 16 6 N -0.51 -11.14 4.58 -228.09 -1.04 -12.18 16 7 C 0.20 5.12 4.76 -4.98 -0.02 5.10 16 8 C -0.50 -13.78 7.78 -34.44 -0.27 -14.05 16 9 H 0.07 1.90 5.62 -52.49 -0.30 1.60 16 10 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 11 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.02 0.47 4.18 -67.71 -0.28 0.18 16 17 C -0.19 -3.15 9.37 -26.69 -0.25 -3.40 16 18 C -0.16 -3.05 9.43 -26.69 -0.25 -3.31 16 19 O -0.38 -5.78 10.14 -59.04 -0.60 -6.37 16 20 C 0.02 0.20 9.90 101.05 1.00 1.20 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.46 4.24 -51.93 -0.22 0.24 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.67 7.62 -51.93 -0.40 0.27 16 25 H 0.08 1.32 6.64 -51.93 -0.35 0.97 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 28 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.00 -0.08 8.01 -51.93 -0.42 -0.50 16 30 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.12 2.62 5.30 -51.93 -0.28 2.35 16 37 H 0.05 0.45 5.65 -51.93 -0.29 0.15 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.38 7.77 -51.93 -0.40 -0.02 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -30.84 311.56 -7.38 -38.22 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.38 Total: -0.21 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.86 Total: -8.52 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.31 Total: -38.33 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.22 Total: -12.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.84 -7.38 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686608617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.189 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds