Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99879 * 2 1 4 4 C 1.53002 * 109.47191 * 198.59027 * 3 2 1 5 5 C 1.53001 * 109.47200 * 174.99809 * 4 3 2 6 6 N 1.46899 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99925 * 190.00158 * 6 5 4 8 8 C 1.50699 * 109.47142 * 161.20967 * 7 6 5 9 9 H 1.07996 * 120.00234 * 354.39766 * 8 7 6 10 10 C 1.37876 * 120.00022 * 174.39952 * 8 7 6 11 11 N 1.31516 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99943 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47411 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47136 * 120.00112 * 12 10 8 15 15 H 1.48502 * 109.46945 * 239.99780 * 12 10 8 16 16 C 1.46901 * 110.99880 * 66.04768 * 6 5 4 17 17 C 1.52999 * 117.49781 * 261.20130 * 16 6 5 18 18 C 1.52998 * 117.49250 * 192.54438 * 16 6 5 19 19 O 1.42896 * 109.47063 * 78.58862 * 3 2 1 20 20 C 1.42895 * 114.00365 * 284.43202 * 19 3 2 21 21 H 1.09000 * 109.47091 * 185.45132 * 1 2 3 22 22 H 1.08995 * 109.47407 * 305.45588 * 1 2 3 23 23 H 1.09005 * 109.46959 * 65.45775 * 1 2 3 24 24 H 1.09004 * 109.47089 * 318.59356 * 3 2 1 25 25 H 1.08997 * 109.47105 * 54.99905 * 4 3 2 26 26 H 1.08995 * 109.46848 * 295.00113 * 4 3 2 27 27 H 1.08997 * 109.47013 * 60.00039 * 5 4 3 28 28 H 1.09002 * 109.47049 * 300.00449 * 5 4 3 29 29 H 1.08998 * 109.47242 * 281.21050 * 7 6 5 30 30 H 1.09004 * 109.47084 * 41.20871 * 7 6 5 31 31 H 0.97005 * 120.00369 * 180.02562 * 11 10 8 32 32 H 1.08997 * 115.55093 * 46.87605 * 16 6 5 33 33 H 1.09000 * 117.49866 * 0.02562 * 17 16 6 34 34 H 1.08996 * 117.49720 * 145.02003 * 17 16 6 35 35 H 1.09007 * 117.49774 * 214.97604 * 18 16 6 36 36 H 1.08998 * 117.50681 * 359.97438 * 18 16 6 37 37 H 1.08998 * 109.47365 * 76.71968 * 20 19 3 38 38 H 1.09005 * 109.47541 * 196.72190 * 20 19 3 39 39 H 1.09003 * 109.47114 * 316.71861 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4666 1.2153 -0.4599 5 6 4.0518 2.6240 -0.5797 6 7 5.4500 2.5374 -1.0218 7 6 6.1156 3.8431 -0.9216 8 6 7.6097 3.6472 -0.9284 9 1 8.0237 2.6499 -0.9085 10 6 8.4484 4.7411 -0.9598 11 7 7.9444 5.9556 -0.9834 12 14 10.3005 4.4981 -0.9689 13 1 10.6094 3.0460 -0.9378 14 1 10.8726 5.1001 -2.1999 15 1 10.8918 5.1552 0.2243 16 6 5.5381 2.0050 -2.3881 17 6 5.8652 0.5190 -2.5475 18 6 6.9177 1.5759 -2.8913 19 8 1.9604 1.8490 1.3206 20 6 0.6637 2.3027 1.7140 21 1 -0.3633 -1.0230 0.0976 22 1 -0.3634 0.5961 0.8370 23 1 -0.3633 0.4269 -0.9349 24 1 1.4538 1.9509 -0.6797 25 1 3.5114 0.7196 -1.4296 26 1 4.0425 0.6433 0.2675 27 1 4.0070 3.1197 0.3900 28 1 3.4758 3.1960 -1.3071 29 1 5.8267 4.4642 -1.7695 30 1 5.8175 4.3327 0.0056 31 1 8.5343 6.7253 -1.0059 32 1 4.8547 2.4503 -3.1111 33 1 6.0147 -0.0638 -1.6386 34 1 5.3973 -0.0133 -3.3756 35 1 7.1418 1.7385 -3.9457 36 1 7.7601 1.6890 -2.2089 37 1 0.0410 1.4454 1.9699 38 1 0.7551 2.9571 2.5810 39 1 0.2057 2.8516 0.8912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686608617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -76.476916 kcal Electronic energy + Delta-G solvation = -18241.269871 eV Core-core repulsion = 15377.702185 eV Total energy + Delta-G solvation = -2863.567687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40731 -39.25126 -36.93907 -35.45036 -34.81677 -32.56179 -29.37578 -27.92563 -26.86279 -25.12246 -24.10611 -23.02345 -22.51034 -21.01017 -18.65083 -18.42405 -18.12615 -16.93854 -16.57594 -16.38464 -16.20388 -15.35356 -15.31758 -14.79130 -14.48395 -14.42062 -14.13903 -13.83933 -13.50448 -13.34444 -13.03183 -12.63528 -12.49218 -12.41522 -12.31931 -12.11255 -11.93333 -11.67056 -11.18212 -10.99416 -10.97626 -10.68292 -10.66221 -10.50892 -9.02713 -8.14383 -6.21645 1.42278 1.43370 1.56394 2.41117 2.52975 2.84159 3.09424 3.18049 3.32427 3.71865 4.04135 4.19110 4.22185 4.23190 4.27388 4.35711 4.38434 4.45729 4.56569 4.63875 4.66241 4.74830 4.85683 4.94201 4.94687 5.06024 5.15153 5.21410 5.24402 5.39919 5.52421 5.80575 6.06768 6.11085 6.13835 6.43449 6.66265 6.93455 7.45973 8.96879 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.005290 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.185933 B = 5292.026454 C = 5895.998359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.414 6.414 3 C 0.250 3.750 4 C -0.084 4.084 5 C 0.071 3.929 6 N -0.517 5.517 7 C 0.211 3.789 8 C -0.504 4.504 9 H 0.071 0.929 10 C 0.000 4.000 11 N -0.939 5.939 12 Si 0.963 3.037 13 H -0.261 1.261 14 H -0.280 1.280 15 H -0.282 1.282 16 C 0.000 4.000 17 C -0.146 4.146 18 C -0.172 4.172 19 O -0.416 6.416 20 C 0.011 3.989 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.025 0.975 29 H -0.033 1.033 30 H -0.003 1.003 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -10.389 -0.643 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.335 6.335 3 C 0.154 3.846 4 C -0.122 4.122 5 C -0.057 4.057 6 N -0.242 5.242 7 C 0.085 3.915 8 C -0.542 4.542 9 H 0.089 0.911 10 C -0.198 4.198 11 N -0.581 5.581 12 Si 0.788 3.212 13 H -0.185 1.185 14 H -0.206 1.206 15 H -0.208 1.208 16 C -0.109 4.109 17 C -0.184 4.184 18 C -0.209 4.209 19 O -0.337 6.337 20 C -0.084 4.084 21 H 0.119 0.881 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.043 0.957 29 H -0.015 1.015 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.290 -10.686 -0.215 17.845 hybrid contribution 0.040 1.390 -0.480 1.471 sum -14.250 -9.296 -0.695 17.028 Atomic orbital electron populations 1.23434 0.79499 1.04736 1.01672 1.88000 1.21807 1.29633 1.94018 1.23368 0.95206 0.82261 0.83745 1.21267 0.91330 0.97094 1.02473 1.21847 0.88503 0.96072 0.99308 1.61790 1.13464 1.27499 1.21428 1.19365 0.94215 0.84653 0.93289 1.21574 0.91281 0.93020 1.48369 0.91098 1.25860 1.03779 0.94788 0.95324 1.70102 1.36655 0.98607 1.52710 0.85417 0.79576 0.78669 0.77494 1.18533 1.20558 1.20824 1.22214 1.00297 0.98170 0.90178 1.23081 1.02141 0.90159 1.02989 1.23122 0.93526 1.03179 1.01111 1.88078 1.31995 1.79320 1.34318 1.23304 0.84162 0.99569 1.01382 0.88067 0.91818 0.92662 0.91383 0.88787 0.91329 0.92158 0.95682 1.01524 0.98524 0.92968 0.90879 0.89101 0.86679 0.88665 0.89120 0.91758 0.88921 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.69 113.37 1.21 1.24 16 2 O -0.41 -10.78 10.59 -126.21 -1.34 -12.12 16 3 C 0.25 6.82 2.86 71.98 0.21 7.02 16 4 C -0.08 -2.64 5.13 30.60 0.16 -2.49 16 5 C 0.07 2.69 4.84 86.30 0.42 3.10 16 6 N -0.52 -23.02 4.58 -875.53 -4.01 -27.03 16 7 C 0.21 11.49 4.76 85.56 0.41 11.90 16 8 C -0.50 -28.64 7.78 25.60 0.20 -28.44 16 9 H 0.07 3.95 5.62 -2.91 -0.02 3.93 16 10 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 11 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 12 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 C 0.00 0.01 4.18 44.91 0.19 0.20 16 17 C -0.15 -4.58 9.37 30.62 0.29 -4.29 16 18 C -0.17 -6.53 9.43 30.62 0.29 -6.24 16 19 O -0.42 -12.18 10.14 -126.21 -1.28 -13.46 16 20 C 0.01 0.22 9.90 113.37 1.12 1.34 16 21 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 0.93 4.24 -2.39 -0.01 0.92 16 23 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.07 1.62 7.62 -2.39 -0.02 1.60 16 25 H 0.09 2.75 6.64 -2.39 -0.02 2.73 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.06 2.46 7.52 -2.39 -0.02 2.44 16 28 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 29 H -0.03 -1.96 8.01 -2.39 -0.02 -1.98 16 30 H 0.00 -0.19 7.75 -2.39 -0.02 -0.21 16 31 H 0.26 15.03 8.31 -92.70 -0.77 14.25 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.09 3.99 5.30 -2.39 -0.01 3.97 16 37 H 0.06 1.04 5.65 -2.39 -0.01 1.03 16 38 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.06 0.93 7.77 -2.39 -0.02 0.91 16 Total: -1.00 -67.57 311.56 1.65 -65.93 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.01 Total: 13.08 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.95 Total: -16.22 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.72 Total: -84.08 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -2.62 Total: -25.59 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.57 1.65 -65.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686608617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.549 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds