Wall clock time and date at job start Mon Mar 30 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00259 * 2 1 4 4 C 1.52997 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47199 * 64.99970 * 4 3 2 6 6 C 1.36934 * 120.00021 * 90.00263 * 5 4 3 7 7 H 1.07993 * 120.00539 * 53.85448 * 6 5 4 8 8 C 1.38821 * 119.99496 * 233.57907 * 6 5 4 9 9 N 1.31626 * 119.99370 * 206.10316 * 8 6 5 10 10 Si 1.86798 * 120.00355 * 26.10374 * 8 6 5 11 11 H 1.48497 * 109.47121 * 54.99397 * 10 8 6 12 12 H 1.48494 * 109.47350 * 174.99752 * 10 8 6 13 13 H 1.48503 * 109.46946 * 294.99769 * 10 8 6 14 14 C 1.46502 * 120.00246 * 269.99732 * 5 4 3 15 15 C 1.52998 * 109.47549 * 276.04143 * 14 5 4 16 16 H 1.08996 * 109.52222 * 55.26244 * 15 14 5 17 17 C 1.53177 * 109.52403 * 175.45509 * 15 14 5 18 18 C 1.53178 * 109.03423 * 176.88123 * 17 15 14 19 19 C 1.53096 * 109.16542 * 303.02287 * 18 17 15 20 20 O 1.42896 * 109.41575 * 57.60772 * 19 18 17 21 21 C 1.42901 * 114.09886 * 298.84108 * 20 19 18 22 22 H 1.09004 * 109.46813 * 60.00621 * 1 2 3 23 23 H 1.09002 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47329 * 300.00202 * 1 2 3 25 25 H 1.09001 * 109.46714 * 59.99574 * 3 2 1 26 26 H 1.08998 * 109.47093 * 300.00119 * 3 2 1 27 27 H 1.09000 * 109.47013 * 305.00120 * 4 3 2 28 28 H 1.09000 * 109.47418 * 184.99936 * 4 3 2 29 29 H 0.97000 * 119.99284 * 179.97438 * 9 8 6 30 30 H 1.09011 * 109.46535 * 36.03738 * 14 5 4 31 31 H 1.08994 * 109.47223 * 156.03202 * 14 5 4 32 32 H 1.08991 * 109.54506 * 296.75223 * 17 15 14 33 33 H 1.09003 * 109.54105 * 57.01848 * 17 15 14 34 34 H 1.08997 * 109.52343 * 183.11224 * 18 17 15 35 35 H 1.09002 * 109.57181 * 62.95966 * 18 17 15 36 36 H 1.09002 * 109.47885 * 297.62335 * 19 18 17 37 37 H 1.08999 * 109.48627 * 177.59548 * 19 18 17 38 38 H 1.09000 * 109.48369 * 301.17945 * 21 20 19 39 39 H 1.09001 * 109.49578 * 181.14645 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2681 1.3451 -2.3370 7 1 4.9770 2.1546 -2.2455 8 6 3.6564 1.0929 -3.5574 9 7 4.2523 1.4443 -4.6772 10 14 1.9878 0.2548 -3.6104 11 1 1.0246 1.0166 -2.7755 12 1 1.5004 0.2104 -5.0124 13 1 2.1119 -1.1287 -3.0854 14 6 4.1063 -0.8926 -1.3403 15 6 5.4704 -1.3179 -0.7931 16 1 5.5912 -0.9364 0.2208 17 6 5.5630 -2.8468 -0.7807 18 6 6.9595 -3.2589 -0.3051 19 6 8.0099 -2.6206 -1.2179 20 8 7.8484 -1.2008 -1.2076 21 6 6.5783 -0.7546 -1.6870 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8507 0.5684 0.8427 28 1 3.9785 2.1764 0.0902 29 1 3.8250 1.2677 -5.5300 30 1 3.3170 -1.3642 -0.7548 31 1 4.0202 -1.2018 -2.3819 32 1 4.8124 -3.2520 -0.1022 33 1 5.3923 -3.2306 -1.7865 34 1 7.0527 -4.3441 -0.3458 35 1 7.1117 -2.9184 0.7191 36 1 7.8832 -2.9935 -2.2342 37 1 9.0069 -2.8756 -0.8587 38 1 6.4328 -1.1031 -2.7095 39 1 6.5438 0.3347 -1.6659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687015844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:51 Heat of formation + Delta-G solvation = -85.393983 kcal Electronic energy + Delta-G solvation = -19160.873865 eV Core-core repulsion = 16296.919505 eV Total energy + Delta-G solvation = -2863.954360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.86303 -37.46983 -35.62756 -33.20610 -31.76611 -30.99709 -28.59994 -25.96801 -25.54963 -24.35218 -23.32726 -21.83881 -20.07358 -19.35503 -16.93151 -15.92550 -15.65587 -15.49975 -15.29366 -14.74947 -14.39561 -14.19200 -13.92987 -13.79596 -13.10591 -12.62387 -12.42722 -12.18060 -11.90915 -11.61995 -11.40961 -11.15784 -11.01870 -10.69136 -10.64272 -10.46693 -10.36275 -10.09808 -9.77255 -9.62511 -9.61691 -9.08042 -8.79864 -8.37059 -6.47401 -6.05807 -3.59845 3.41675 3.48156 3.57119 4.39684 4.50671 4.56670 4.98978 5.20644 5.26857 5.27798 5.45455 5.57036 5.61595 5.67821 5.75025 5.91691 5.93155 6.01227 6.07242 6.10026 6.15848 6.18691 6.32065 6.34456 6.40868 6.55626 6.58252 6.72979 6.79340 6.89853 7.11664 7.18393 7.74335 7.85873 8.09945 8.53541 9.07534 9.69152 10.24051 11.07624 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.009468 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.784828 B = 2956.594545 C = 3611.034541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.035 3.965 4 C 0.147 3.853 5 N -0.595 5.595 6 C -0.283 4.283 7 H 0.070 0.930 8 C 0.056 3.944 9 N -0.887 5.887 10 Si 0.876 3.124 11 H -0.277 1.277 12 H -0.308 1.308 13 H -0.272 1.272 14 C 0.155 3.845 15 C -0.135 4.135 16 H 0.066 0.934 17 C -0.118 4.118 18 C -0.152 4.152 19 C 0.061 3.939 20 O -0.393 6.393 21 C 0.079 3.921 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -6.608 8.625 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.044 4.044 4 C 0.021 3.979 5 N -0.317 5.317 6 C -0.412 4.412 7 H 0.087 0.913 8 C -0.148 4.148 9 N -0.525 5.525 10 Si 0.705 3.295 11 H -0.203 1.203 12 H -0.236 1.236 13 H -0.198 1.198 14 C 0.029 3.971 15 C -0.156 4.156 16 H 0.084 0.916 17 C -0.156 4.156 18 C -0.190 4.190 19 C -0.017 4.017 20 O -0.312 6.312 21 C 0.003 3.997 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.629 -6.609 8.474 10.765 hybrid contribution -1.657 -0.419 -0.314 1.738 sum -2.286 -7.028 8.160 11.009 Atomic orbital electron populations 1.22652 0.83132 1.01637 0.99224 1.87902 1.17937 1.28974 1.95133 1.23551 0.98096 0.83940 0.98783 1.21080 0.88913 0.97951 0.89972 1.43975 1.76832 1.01271 1.09598 1.18563 1.21038 1.14900 0.86677 0.91289 1.25873 0.97037 0.96248 0.95626 1.69964 1.37118 1.47893 0.97492 0.87007 0.87038 0.80734 0.74744 1.20311 1.23571 1.19814 1.21161 0.92069 0.84703 0.99161 1.22346 0.99285 0.93467 1.00498 0.91581 1.21619 0.95903 0.97055 1.01032 1.22157 0.96473 0.99902 1.00439 1.22440 0.98206 0.82841 0.98166 1.87901 1.36587 1.20234 1.86507 1.22671 0.80435 1.01254 0.95361 0.94705 0.90604 0.94937 0.95247 0.92925 0.93695 0.91460 0.92673 0.93606 0.92728 0.92179 0.92277 0.91912 0.91596 0.93856 0.90082 0.93661 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.41 9.44 -35.23 -0.33 -7.74 16 3 C 0.04 0.67 6.08 37.16 0.23 0.89 16 4 C 0.15 2.90 6.09 -4.05 -0.02 2.88 16 5 N -0.60 -13.57 1.45 -173.24 -0.25 -13.83 16 6 C -0.28 -7.49 8.17 -15.06 -0.12 -7.62 16 7 H 0.07 2.00 8.06 -52.49 -0.42 1.57 16 8 C 0.06 1.55 5.07 -17.42 -0.09 1.46 16 9 N -0.89 -26.17 13.97 55.49 0.78 -25.39 16 10 Si 0.88 22.19 26.28 -169.99 -4.47 17.72 16 11 H -0.28 -6.91 6.31 56.52 0.36 -6.56 16 12 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.82 6.23 56.52 0.35 -6.46 16 14 C 0.15 3.34 3.67 -4.04 -0.01 3.33 16 15 C -0.13 -2.56 2.59 -90.48 -0.23 -2.79 16 16 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 17 C -0.12 -1.89 5.31 -26.55 -0.14 -2.03 16 18 C -0.15 -2.12 6.14 -26.59 -0.16 -2.29 16 19 C 0.06 0.92 6.84 37.21 0.25 1.18 16 20 O -0.39 -7.55 10.76 -35.23 -0.38 -7.93 16 21 C 0.08 1.62 5.68 37.21 0.21 1.83 16 22 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.12 6.91 -51.93 -0.36 0.77 16 27 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 28 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 30 H 0.05 0.98 7.03 -51.92 -0.37 0.61 16 31 H 0.05 1.30 5.74 -51.93 -0.30 1.01 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 2.60 6.84 -51.93 -0.36 2.25 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -29.26 304.77 -5.98 -35.24 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.93 Total: -1.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 1.01 Total: -1.57 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.52 Total: -39.22 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.71 Total: -15.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.47 Total: 17.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.26 -5.98 -35.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687015844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.155 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds