Wall clock time and date at job start Mon Mar 30 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00259 * 2 1 4 4 C 1.52997 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47199 * 64.99970 * 4 3 2 6 6 C 1.36934 * 120.00021 * 90.00263 * 5 4 3 7 7 H 1.07993 * 120.00539 * 53.85448 * 6 5 4 8 8 C 1.38821 * 119.99496 * 233.57907 * 6 5 4 9 9 N 1.31626 * 119.99370 * 206.10316 * 8 6 5 10 10 Si 1.86798 * 120.00355 * 26.10374 * 8 6 5 11 11 H 1.48497 * 109.47121 * 54.99397 * 10 8 6 12 12 H 1.48494 * 109.47350 * 174.99752 * 10 8 6 13 13 H 1.48503 * 109.46946 * 294.99769 * 10 8 6 14 14 C 1.46502 * 120.00246 * 269.99732 * 5 4 3 15 15 C 1.52998 * 109.47549 * 276.04143 * 14 5 4 16 16 H 1.08996 * 109.52222 * 55.26244 * 15 14 5 17 17 C 1.53177 * 109.52403 * 175.45509 * 15 14 5 18 18 C 1.53178 * 109.03423 * 176.88123 * 17 15 14 19 19 C 1.53096 * 109.16542 * 303.02287 * 18 17 15 20 20 O 1.42896 * 109.41575 * 57.60772 * 19 18 17 21 21 C 1.42901 * 114.09886 * 298.84108 * 20 19 18 22 22 H 1.09004 * 109.46813 * 60.00621 * 1 2 3 23 23 H 1.09002 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47329 * 300.00202 * 1 2 3 25 25 H 1.09001 * 109.46714 * 59.99574 * 3 2 1 26 26 H 1.08998 * 109.47093 * 300.00119 * 3 2 1 27 27 H 1.09000 * 109.47013 * 305.00120 * 4 3 2 28 28 H 1.09000 * 109.47418 * 184.99936 * 4 3 2 29 29 H 0.97000 * 119.99284 * 179.97438 * 9 8 6 30 30 H 1.09011 * 109.46535 * 36.03738 * 14 5 4 31 31 H 1.08994 * 109.47223 * 156.03202 * 14 5 4 32 32 H 1.08991 * 109.54506 * 296.75223 * 17 15 14 33 33 H 1.09003 * 109.54105 * 57.01848 * 17 15 14 34 34 H 1.08997 * 109.52343 * 183.11224 * 18 17 15 35 35 H 1.09002 * 109.57181 * 62.95966 * 18 17 15 36 36 H 1.09002 * 109.47885 * 297.62335 * 19 18 17 37 37 H 1.08999 * 109.48627 * 177.59548 * 19 18 17 38 38 H 1.09000 * 109.48369 * 301.17945 * 21 20 19 39 39 H 1.09001 * 109.49578 * 181.14645 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2681 1.3451 -2.3370 7 1 4.9770 2.1546 -2.2455 8 6 3.6564 1.0929 -3.5574 9 7 4.2523 1.4443 -4.6772 10 14 1.9878 0.2548 -3.6104 11 1 1.0246 1.0166 -2.7755 12 1 1.5004 0.2104 -5.0124 13 1 2.1119 -1.1287 -3.0854 14 6 4.1063 -0.8926 -1.3403 15 6 5.4704 -1.3179 -0.7931 16 1 5.5912 -0.9364 0.2208 17 6 5.5630 -2.8468 -0.7807 18 6 6.9595 -3.2589 -0.3051 19 6 8.0099 -2.6206 -1.2179 20 8 7.8484 -1.2008 -1.2076 21 6 6.5783 -0.7546 -1.6870 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8507 0.5684 0.8427 28 1 3.9785 2.1764 0.0902 29 1 3.8250 1.2677 -5.5300 30 1 3.3170 -1.3642 -0.7548 31 1 4.0202 -1.2018 -2.3819 32 1 4.8124 -3.2520 -0.1022 33 1 5.3923 -3.2306 -1.7865 34 1 7.0527 -4.3441 -0.3458 35 1 7.1117 -2.9184 0.7191 36 1 7.8832 -2.9935 -2.2342 37 1 9.0069 -2.8756 -0.8587 38 1 6.4328 -1.1031 -2.7095 39 1 6.5438 0.3347 -1.6659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687015844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:51 Heat of formation + Delta-G solvation = -104.318404 kcal Electronic energy + Delta-G solvation = -19161.694489 eV Core-core repulsion = 16296.919505 eV Total energy + Delta-G solvation = -2864.774984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34210 -38.94714 -37.31483 -34.73681 -33.75539 -32.41333 -30.22429 -27.45880 -27.18070 -25.78285 -25.05609 -23.27823 -21.74988 -20.85221 -18.88144 -17.48949 -17.11350 -17.01263 -16.76441 -16.55272 -15.90576 -15.65323 -15.40769 -15.21723 -14.92974 -14.46170 -13.97195 -13.75024 -13.39253 -13.10131 -12.87427 -12.72547 -12.64968 -12.43706 -12.24775 -12.02137 -11.95609 -11.71879 -11.47877 -11.40869 -11.12256 -10.64647 -10.37397 -10.25641 -8.39876 -8.20929 -5.72666 1.37848 1.39668 1.51148 2.45604 2.98848 3.02395 3.13576 3.44824 3.97656 4.03274 4.10668 4.15015 4.36697 4.41002 4.44201 4.56217 4.60801 4.62622 4.66381 4.70042 4.76504 4.84474 4.89098 4.97546 5.01645 5.04820 5.10275 5.19412 5.24150 5.30302 5.46815 5.55953 5.98712 6.31012 6.38968 6.40099 7.13740 7.64501 8.20567 8.94948 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.009468 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.784828 B = 2956.594545 C = 3611.034541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.042 3.958 4 C 0.144 3.856 5 N -0.604 5.604 6 C -0.259 4.259 7 H 0.034 0.966 8 C 0.009 3.991 9 N -0.932 5.932 10 Si 0.928 3.072 11 H -0.270 1.270 12 H -0.317 1.317 13 H -0.266 1.266 14 C 0.160 3.840 15 C -0.125 4.125 16 H 0.070 0.930 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.049 3.951 20 O -0.409 6.409 21 C 0.092 3.908 22 H 0.021 0.979 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.110 0.890 38 H 0.022 0.978 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -8.540 11.046 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.037 4.037 4 C 0.019 3.981 5 N -0.326 5.326 6 C -0.389 4.389 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.574 5.574 10 Si 0.757 3.243 11 H -0.195 1.195 12 H -0.245 1.245 13 H -0.191 1.191 14 C 0.034 3.966 15 C -0.146 4.146 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.181 4.181 19 C -0.027 4.027 20 O -0.329 6.329 21 C 0.015 3.985 22 H 0.040 0.960 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.040 0.960 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.344 -8.556 10.938 13.952 hybrid contribution -1.352 0.176 -0.983 1.681 sum -2.696 -8.380 9.956 13.290 Atomic orbital electron populations 1.22863 0.81178 1.03248 0.99894 1.87849 1.20091 1.28928 1.95280 1.23361 0.97081 0.84150 0.99073 1.21185 0.89951 0.98257 0.88745 1.44051 1.77313 1.01634 1.09651 1.18339 1.19053 1.13658 0.87812 0.94841 1.26334 0.99532 0.97724 0.95402 1.70067 1.38480 1.50838 0.97968 0.86154 0.83790 0.80256 0.74124 1.19532 1.24547 1.19145 1.21095 0.93898 0.83807 0.97766 1.22179 0.96718 0.95989 0.99674 0.91196 1.21624 0.98118 0.94256 1.01486 1.22119 0.94166 1.01777 1.00045 1.22800 1.00464 0.80491 0.98985 1.87862 1.35501 1.23218 1.86322 1.22279 0.82190 0.99289 0.94735 0.96040 0.88641 0.92200 0.91668 0.95819 0.91597 0.91277 0.92942 0.92656 0.95562 0.90345 0.92779 0.88626 0.90988 0.93814 0.87165 0.96004 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.40 -14.50 9.44 -148.98 -1.41 -15.91 16 3 C 0.04 1.50 6.08 71.98 0.44 1.94 16 4 C 0.14 5.46 6.09 86.38 0.53 5.99 16 5 N -0.60 -27.53 1.45 -702.01 -1.02 -28.55 16 6 C -0.26 -14.12 8.17 84.04 0.69 -13.43 16 7 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 8 C 0.01 0.54 5.07 84.86 0.43 0.97 16 9 N -0.93 -57.27 13.97 21.66 0.30 -56.97 16 10 Si 0.93 46.63 26.28 68.60 1.80 48.44 16 11 H -0.27 -13.11 6.31 99.48 0.63 -12.48 16 12 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 13 H -0.27 -12.95 6.23 99.48 0.62 -12.33 16 14 C 0.16 6.77 3.67 86.38 0.32 7.09 16 15 C -0.12 -4.59 2.59 -10.70 -0.03 -4.62 16 16 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 17 C -0.12 -3.43 5.31 30.71 0.16 -3.26 16 18 C -0.14 -3.48 6.14 30.69 0.19 -3.30 16 19 C 0.05 1.36 6.84 72.01 0.49 1.86 16 20 O -0.41 -15.48 10.76 -148.98 -1.60 -17.08 16 21 C 0.09 3.84 5.68 72.02 0.41 4.25 16 22 H 0.02 0.65 8.12 -2.38 -0.02 0.63 16 23 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.02 0.98 6.91 -2.39 -0.02 0.96 16 27 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 28 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.06 2.25 7.03 -2.38 -0.02 2.23 16 31 H 0.03 1.25 5.74 -2.39 -0.01 1.24 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 3.75 6.84 -2.39 -0.02 3.73 16 Total: -1.00 -64.88 304.77 3.78 -61.11 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.82 Total: 9.55 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.87 Total: -0.58 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -0.71 Total: -85.52 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -3.01 Total: -32.99 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.80 Total: 48.44 kcal Total: -64.88 3.78 -61.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687015844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.213 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds