Wall clock time and date at job start Mon Mar 30 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36941 * 120.00131 * 2 1 4 4 H 1.08001 * 119.99834 * 202.71066 * 3 2 1 5 5 C 1.38804 * 119.99967 * 22.70244 * 3 2 1 6 6 N 1.31624 * 120.00088 * 11.51181 * 5 3 2 7 7 Si 1.86802 * 120.00131 * 191.50697 * 5 3 2 8 8 H 1.48501 * 109.46746 * 60.00678 * 7 5 3 9 9 H 1.48502 * 109.47466 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47148 * 300.00440 * 7 5 3 11 11 C 1.46506 * 119.99891 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47081 * 269.99845 * 11 2 1 13 13 O 1.42902 * 109.46908 * 65.00262 * 12 11 2 14 14 C 1.42901 * 113.99805 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47000 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47819 * 305.00017 * 15 14 13 17 17 C 1.53091 * 109.48794 * 184.96862 * 15 14 13 18 18 C 1.53176 * 109.15975 * 182.39978 * 17 15 14 19 19 C 1.53184 * 109.03777 * 56.98589 * 18 17 15 20 20 C 1.53096 * 109.15889 * 303.02018 * 19 18 17 21 21 O 1.42898 * 109.41842 * 57.60507 * 20 19 18 22 22 H 1.09007 * 109.47343 * 273.92126 * 1 2 3 23 23 H 1.08999 * 109.47241 * 33.92094 * 1 2 3 24 24 H 1.09003 * 109.47216 * 153.92273 * 1 2 3 25 25 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.46543 * 150.00024 * 11 2 1 27 27 H 1.08993 * 109.46864 * 30.00153 * 11 2 1 28 28 H 1.08995 * 109.47539 * 305.00179 * 12 11 2 29 29 H 1.09004 * 109.46793 * 184.99912 * 12 11 2 30 30 H 1.08993 * 109.47290 * 59.99872 * 14 13 12 31 31 H 1.09006 * 109.47358 * 299.99568 * 14 13 12 32 32 H 1.08996 * 109.52656 * 302.30788 * 17 15 14 33 33 H 1.09000 * 109.52260 * 62.50253 * 17 15 14 34 34 H 1.08997 * 109.54972 * 297.11530 * 18 17 15 35 35 H 1.09002 * 109.61769 * 176.89316 * 18 17 15 36 36 H 1.08996 * 109.52589 * 183.11562 * 19 18 17 37 37 H 1.08997 * 109.57468 * 62.94995 * 19 18 17 38 38 H 1.09003 * 109.47800 * 297.62068 * 20 19 18 39 39 H 1.09003 * 109.48752 * 177.59651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1668 1.2221 -0.3611 5 6 1.5363 2.3415 0.4639 6 7 0.3917 2.2653 1.1093 7 14 2.3354 4.0046 0.1725 8 1 2.4785 4.2359 -1.2874 9 1 1.4873 5.0715 0.7623 10 1 3.6757 4.0285 0.8113 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9926 2.0822 14 6 1.3323 -2.4160 3.4412 15 6 -0.0567 -2.6900 4.0214 16 1 -0.6829 -1.8064 3.8979 17 6 0.0683 -3.0233 5.5103 18 6 -1.3187 -3.3547 6.0695 19 6 -1.9192 -4.5107 5.2635 20 6 -1.9673 -4.1200 3.7840 21 8 -0.6502 -3.7944 3.3356 22 1 -0.3634 0.0703 1.0253 23 1 -0.3634 0.8527 -0.5735 24 1 -0.3634 -0.9231 -0.4518 25 1 -0.0368 3.0728 1.4339 26 1 3.1498 -1.1386 -0.5134 27 1 1.6083 -2.0286 -0.5129 28 1 2.9641 -0.9123 1.9819 29 1 3.0731 -2.6058 1.4449 30 1 1.8210 -1.6335 4.0216 31 1 1.9296 -3.3268 3.4840 32 1 0.7271 -3.8824 5.6373 33 1 0.4800 -2.1656 6.0423 34 1 -1.9634 -2.4797 5.9879 35 1 -1.2311 -3.6468 7.1160 36 1 -2.9288 -4.7167 5.6188 37 1 -1.3015 -5.4004 5.3853 38 1 -2.6186 -3.2551 3.6575 39 1 -2.3543 -4.9549 3.1998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687804427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:20 Heat of formation + Delta-G solvation = -79.812639 kcal Electronic energy + Delta-G solvation = -18412.423145 eV Core-core repulsion = 15548.710811 eV Total energy + Delta-G solvation = -2863.712334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.31891 -37.14993 -35.07201 -33.55837 -32.06964 -31.09813 -28.33732 -26.50345 -25.60589 -24.03305 -22.83205 -21.91596 -20.36552 -20.03584 -16.68755 -16.39872 -15.96981 -15.74645 -15.03668 -14.63177 -14.49988 -14.42022 -13.77146 -13.25728 -13.04131 -12.98572 -12.63505 -12.17184 -11.73100 -11.39556 -11.25316 -11.12371 -10.99061 -10.79979 -10.68454 -10.56640 -10.44461 -10.15947 -9.94248 -9.82735 -9.71595 -9.29336 -8.80633 -8.41499 -6.58560 -5.58682 -3.04428 3.44207 3.49360 3.50481 3.92441 4.22545 4.59661 4.76309 4.82358 4.87386 5.13979 5.27175 5.44050 5.50174 5.53035 5.62024 5.67519 5.72970 5.77159 5.81759 5.87787 5.90854 6.02470 6.11535 6.19522 6.27459 6.34965 6.38072 6.66488 6.89810 7.07421 7.43236 7.59827 7.89064 8.01147 8.07433 8.53567 9.38069 10.02362 10.53653 11.45496 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.005335 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.172512 B = 5246.906004 C = 5495.948379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.152 3.848 12 C 0.043 3.957 13 O -0.360 6.360 14 C 0.073 3.927 15 C 0.095 3.905 16 H 0.069 0.931 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.059 3.941 21 O -0.368 6.368 22 H 0.031 0.969 23 H 0.036 0.964 24 H -0.006 1.006 25 H 0.250 0.750 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -12.352 8.599 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.024 3.976 12 C -0.037 4.037 13 O -0.279 6.279 14 C -0.005 4.005 15 C 0.037 3.963 16 H 0.087 0.913 17 C -0.186 4.186 18 C -0.159 4.159 19 C -0.194 4.194 20 C -0.018 4.018 21 O -0.287 6.287 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.013 0.987 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.522 -12.279 8.405 15.092 hybrid contribution 0.534 1.089 0.518 1.319 sum -1.988 -11.190 8.922 14.449 Atomic orbital electron populations 1.20681 0.82195 0.94818 0.99275 1.43885 1.02166 1.00226 1.85655 1.19180 0.98122 0.85712 1.35412 0.91646 1.25020 0.97814 0.98308 0.98559 1.70099 1.18141 1.26817 1.39935 0.86381 0.78418 0.84143 0.77829 1.21154 1.21729 1.21127 1.20894 0.96332 0.88858 0.91479 1.23463 0.85358 0.96690 0.98143 1.88032 1.29934 1.87123 1.22806 1.22318 0.94551 0.97808 0.85773 1.22081 0.94658 0.89635 0.89954 0.91264 1.22130 0.97842 1.02460 0.96142 1.21565 0.96420 0.98624 0.99252 1.22208 1.01422 0.99004 0.96760 1.22532 0.85234 1.00225 0.93792 1.88006 1.29476 1.50582 1.60668 0.95064 0.94507 0.98713 0.93950 0.92449 0.93707 0.93590 0.95813 0.92588 0.93852 0.91146 0.90674 0.91610 0.91600 0.91170 0.91287 0.93163 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.71 8.61 59.84 0.52 5.23 16 2 N -0.60 -16.01 2.89 -181.12 -0.52 -16.53 16 3 C -0.25 -7.25 9.67 -15.06 -0.15 -7.40 16 4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.90 -27.32 10.62 55.49 0.59 -26.73 16 7 Si 0.90 22.35 29.57 -169.99 -5.03 17.33 16 8 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.15 3.38 6.11 -4.04 -0.02 3.35 16 12 C 0.04 0.89 6.28 37.16 0.23 1.12 16 13 O -0.36 -7.83 9.86 -40.04 -0.39 -8.22 16 14 C 0.07 1.27 5.60 37.16 0.21 1.48 16 15 C 0.09 1.50 2.93 -26.68 -0.08 1.42 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.15 -1.79 5.42 -26.59 -0.14 -1.93 16 18 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 19 C -0.16 -1.59 6.14 -26.59 -0.16 -1.75 16 20 C 0.06 0.74 6.84 37.21 0.25 1.00 16 21 O -0.37 -6.07 10.37 -40.04 -0.42 -6.48 16 22 H 0.03 0.91 7.43 -51.93 -0.39 0.52 16 23 H 0.04 1.04 7.20 -51.93 -0.37 0.67 16 24 H -0.01 -0.14 7.85 -51.93 -0.41 -0.55 16 25 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 26 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 27 H 0.04 0.94 7.86 -51.93 -0.41 0.54 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -32.24 313.75 -7.67 -39.91 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -7.04 Total: -5.03 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 0.41 Total: 1.03 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.07 Total: -43.26 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.81 Total: -14.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.24 -7.67 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.901 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds