Wall clock time and date at job start Mon Mar 30 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36941 * 120.00131 * 2 1 4 4 H 1.08001 * 119.99834 * 202.71066 * 3 2 1 5 5 C 1.38804 * 119.99967 * 22.70244 * 3 2 1 6 6 N 1.31624 * 120.00088 * 11.51181 * 5 3 2 7 7 Si 1.86802 * 120.00131 * 191.50697 * 5 3 2 8 8 H 1.48501 * 109.46746 * 60.00678 * 7 5 3 9 9 H 1.48502 * 109.47466 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47148 * 300.00440 * 7 5 3 11 11 C 1.46506 * 119.99891 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47081 * 269.99845 * 11 2 1 13 13 O 1.42902 * 109.46908 * 65.00262 * 12 11 2 14 14 C 1.42901 * 113.99805 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47000 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47819 * 305.00017 * 15 14 13 17 17 C 1.53091 * 109.48794 * 184.96862 * 15 14 13 18 18 C 1.53176 * 109.15975 * 182.39978 * 17 15 14 19 19 C 1.53184 * 109.03777 * 56.98589 * 18 17 15 20 20 C 1.53096 * 109.15889 * 303.02018 * 19 18 17 21 21 O 1.42898 * 109.41842 * 57.60507 * 20 19 18 22 22 H 1.09007 * 109.47343 * 273.92126 * 1 2 3 23 23 H 1.08999 * 109.47241 * 33.92094 * 1 2 3 24 24 H 1.09003 * 109.47216 * 153.92273 * 1 2 3 25 25 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.46543 * 150.00024 * 11 2 1 27 27 H 1.08993 * 109.46864 * 30.00153 * 11 2 1 28 28 H 1.08995 * 109.47539 * 305.00179 * 12 11 2 29 29 H 1.09004 * 109.46793 * 184.99912 * 12 11 2 30 30 H 1.08993 * 109.47290 * 59.99872 * 14 13 12 31 31 H 1.09006 * 109.47358 * 299.99568 * 14 13 12 32 32 H 1.08996 * 109.52656 * 302.30788 * 17 15 14 33 33 H 1.09000 * 109.52260 * 62.50253 * 17 15 14 34 34 H 1.08997 * 109.54972 * 297.11530 * 18 17 15 35 35 H 1.09002 * 109.61769 * 176.89316 * 18 17 15 36 36 H 1.08996 * 109.52589 * 183.11562 * 19 18 17 37 37 H 1.08997 * 109.57468 * 62.94995 * 19 18 17 38 38 H 1.09003 * 109.47800 * 297.62068 * 20 19 18 39 39 H 1.09003 * 109.48752 * 177.59651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1668 1.2221 -0.3611 5 6 1.5363 2.3415 0.4639 6 7 0.3917 2.2653 1.1093 7 14 2.3354 4.0046 0.1725 8 1 2.4785 4.2359 -1.2874 9 1 1.4873 5.0715 0.7623 10 1 3.6757 4.0285 0.8113 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9926 2.0822 14 6 1.3323 -2.4160 3.4412 15 6 -0.0567 -2.6900 4.0214 16 1 -0.6829 -1.8064 3.8979 17 6 0.0683 -3.0233 5.5103 18 6 -1.3187 -3.3547 6.0695 19 6 -1.9192 -4.5107 5.2635 20 6 -1.9673 -4.1200 3.7840 21 8 -0.6502 -3.7944 3.3356 22 1 -0.3634 0.0703 1.0253 23 1 -0.3634 0.8527 -0.5735 24 1 -0.3634 -0.9231 -0.4518 25 1 -0.0368 3.0728 1.4339 26 1 3.1498 -1.1386 -0.5134 27 1 1.6083 -2.0286 -0.5129 28 1 2.9641 -0.9123 1.9819 29 1 3.0731 -2.6058 1.4449 30 1 1.8210 -1.6335 4.0216 31 1 1.9296 -3.3268 3.4840 32 1 0.7271 -3.8824 5.6373 33 1 0.4800 -2.1656 6.0423 34 1 -1.9634 -2.4797 5.9879 35 1 -1.2311 -3.6468 7.1160 36 1 -2.9288 -4.7167 5.6188 37 1 -1.3015 -5.4004 5.3853 38 1 -2.6186 -3.2551 3.6575 39 1 -2.3543 -4.9549 3.1998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687804427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:20 Heat of formation + Delta-G solvation = -100.343663 kcal Electronic energy + Delta-G solvation = -18413.313437 eV Core-core repulsion = 15548.710811 eV Total energy + Delta-G solvation = -2864.602626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44673 -38.75904 -37.03008 -34.55286 -33.63965 -32.77216 -30.11112 -27.94220 -27.61767 -25.13219 -24.66942 -23.11633 -22.14335 -21.15475 -18.75324 -17.65524 -17.37379 -17.06592 -16.83784 -16.19706 -15.85090 -15.46447 -15.28933 -14.92941 -14.86064 -14.41763 -13.68954 -13.61413 -13.34276 -13.01331 -12.78796 -12.66995 -12.56917 -12.43027 -12.19576 -12.05947 -12.00178 -11.79145 -11.77020 -11.53518 -11.22902 -10.60551 -10.38804 -10.37827 -8.73721 -7.77245 -5.26162 1.46999 1.50336 1.56674 2.53555 2.79158 2.86499 3.35333 3.75665 3.83698 3.90978 3.96265 4.07287 4.15425 4.28725 4.42004 4.50916 4.53950 4.58213 4.63804 4.66267 4.74606 4.85194 4.91509 4.93555 4.98253 5.05074 5.09776 5.15851 5.17162 5.36008 5.36603 5.66181 5.80839 6.29922 6.36123 6.51157 7.18993 7.91485 8.38933 9.26367 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.005335 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.172512 B = 5246.906004 C = 5495.948379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.296 1.296 10 H -0.274 1.274 11 C 0.146 3.854 12 C 0.050 3.950 13 O -0.393 6.393 14 C 0.068 3.932 15 C 0.096 3.904 16 H 0.038 0.962 17 C -0.141 4.141 18 C -0.122 4.122 19 C -0.149 4.149 20 C 0.049 3.951 21 O -0.395 6.395 22 H 0.000 1.000 23 H 0.012 0.988 24 H 0.015 0.985 25 H 0.245 0.755 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -13.471 9.261 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.093 0.907 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.204 1.204 9 H -0.222 1.222 10 H -0.200 1.200 11 C 0.019 3.981 12 C -0.029 4.029 13 O -0.312 6.312 14 C -0.009 4.009 15 C 0.038 3.962 16 H 0.056 0.944 17 C -0.179 4.179 18 C -0.159 4.159 19 C -0.186 4.186 20 C -0.027 4.027 21 O -0.314 6.314 22 H 0.018 0.982 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.622 -13.432 9.064 16.285 hybrid contribution 0.249 1.341 0.281 1.393 sum -1.373 -12.091 9.345 15.342 Atomic orbital electron populations 1.20326 0.82967 0.94640 0.97053 1.44107 1.02091 1.01575 1.85879 1.19583 0.98512 0.86638 1.34789 0.90729 1.25848 0.98529 1.01978 0.98696 1.70295 1.19707 1.27298 1.41259 0.85289 0.77614 0.79332 0.77862 1.20350 1.22241 1.19989 1.21122 0.96858 0.87184 0.92892 1.23262 0.85469 0.97586 0.96542 1.87989 1.30721 1.87506 1.25017 1.22540 0.96053 0.98456 0.83837 1.22041 0.93201 0.88662 0.92329 0.94417 1.22093 0.99412 1.03146 0.93231 1.21613 0.95126 0.98623 1.00571 1.22165 1.02942 0.98905 0.94621 1.22792 0.83465 1.00410 0.96077 1.87946 1.31239 1.50394 1.61841 0.98195 0.96923 0.96623 0.94549 0.90603 0.92598 0.95751 0.92037 0.92598 0.91889 0.89986 0.90093 0.92259 0.89146 0.88877 0.90623 0.94103 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.77 8.61 127.77 1.10 11.87 16 2 N -0.61 -32.99 2.89 -726.95 -2.10 -35.09 16 3 C -0.27 -15.09 9.67 84.03 0.81 -14.28 16 4 H 0.08 4.03 7.85 -2.91 -0.02 4.00 16 5 C -0.06 -3.24 5.12 84.86 0.43 -2.80 16 6 N -0.94 -58.13 10.62 21.65 0.23 -57.90 16 7 Si 0.97 46.18 29.57 68.60 2.03 48.21 16 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 C 0.15 6.30 6.11 86.38 0.53 6.82 16 12 C 0.05 2.03 6.28 71.98 0.45 2.48 16 13 O -0.39 -17.12 9.86 -144.38 -1.42 -18.55 16 14 C 0.07 2.35 5.60 71.98 0.40 2.75 16 15 C 0.10 3.05 2.93 30.63 0.09 3.14 16 16 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.14 -3.23 5.42 30.68 0.17 -3.06 16 18 C -0.12 -2.30 6.03 30.71 0.19 -2.12 16 19 C -0.15 -2.69 6.14 30.69 0.19 -2.50 16 20 C 0.05 1.19 6.84 72.01 0.49 1.68 16 21 O -0.39 -12.91 10.37 -144.38 -1.50 -14.40 16 22 H 0.00 -0.02 7.43 -2.38 -0.02 -0.03 16 23 H 0.01 0.71 7.20 -2.39 -0.02 0.70 16 24 H 0.02 0.76 7.85 -2.39 -0.02 0.74 16 25 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 27 H 0.06 2.27 7.86 -2.39 -0.02 2.26 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.76 313.75 3.07 -66.69 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.98 Total: 7.06 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 4.85 Total: 3.99 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -1.87 Total: -92.99 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -2.92 Total: -32.95 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.76 3.07 -66.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds