Wall clock time and date at job start Mon Mar 30 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99800 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47181 * 65.00187 * 4 3 2 6 6 C 1.42899 * 114.00418 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47348 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47232 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47499 * 179.97438 * 8 7 6 10 10 C 1.36943 * 120.00274 * 270.00442 * 9 8 7 11 11 H 1.07997 * 120.00300 * 144.92526 * 10 9 8 12 12 C 1.38817 * 119.99408 * 324.92321 * 10 9 8 13 13 N 1.31620 * 120.00119 * 337.93451 * 12 10 9 14 14 Si 1.86796 * 119.99584 * 157.93810 * 12 10 9 15 15 H 1.48491 * 109.47473 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47099 * 120.00190 * 14 12 10 17 17 H 1.48498 * 109.47119 * 239.99265 * 14 12 10 18 18 C 1.46504 * 120.00237 * 89.99677 * 9 8 7 19 19 C 1.53000 * 117.49921 * 183.24237 * 18 9 8 20 20 C 1.52998 * 117.49703 * 114.57839 * 18 9 8 21 21 H 1.09008 * 109.46616 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47312 * 299.99579 * 1 2 3 23 23 H 1.08999 * 109.47304 * 60.00677 * 1 2 3 24 24 H 1.08995 * 109.47127 * 59.99879 * 3 2 1 25 25 H 1.08993 * 109.47099 * 299.99901 * 3 2 1 26 26 H 1.08995 * 109.47573 * 305.00399 * 4 3 2 27 27 H 1.08997 * 109.47414 * 184.99535 * 4 3 2 28 28 H 1.09005 * 109.47002 * 59.99783 * 6 5 4 29 29 H 1.08992 * 109.47025 * 300.00028 * 6 5 4 30 30 H 1.09005 * 109.47181 * 59.99973 * 7 6 5 31 31 H 1.09004 * 109.47441 * 300.00101 * 7 6 5 32 32 H 1.09005 * 109.47091 * 59.99879 * 8 7 6 33 33 H 1.08998 * 109.47356 * 300.00334 * 8 7 6 34 34 H 0.96995 * 119.99672 * 175.91349 * 13 12 10 35 35 H 1.09004 * 115.54877 * 328.91115 * 18 9 8 36 36 H 1.08998 * 117.50153 * 359.97438 * 19 18 9 37 37 H 1.08995 * 117.49708 * 145.02504 * 19 18 9 38 38 H 1.08995 * 117.49988 * 214.98174 * 20 18 9 39 39 H 1.08997 * 117.49880 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2349 -2.6613 8 6 7.2431 -0.4063 -2.7702 9 7 7.5729 -1.0338 -4.0522 10 6 7.6420 -2.3980 -4.1492 11 1 7.3237 -2.8918 -5.0554 12 6 8.1213 -3.1461 -3.0826 13 7 8.8947 -2.5831 -2.1787 14 14 7.6685 -4.9520 -2.9304 15 1 6.7940 -5.3405 -4.0658 16 1 8.9040 -5.7756 -2.9521 17 1 6.9473 -5.1754 -1.6517 18 6 7.8286 -0.2018 -5.2307 19 6 8.0930 -0.9176 -6.5569 20 6 9.2410 -0.2246 -5.8185 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8464 -0.8899 26 1 3.8508 0.5686 0.8426 27 1 3.9784 2.1766 0.0901 28 1 5.7363 -0.2120 -0.5075 29 1 5.8631 1.3960 -1.2602 30 1 5.3725 0.3965 -3.4762 31 1 5.2457 -1.2112 -2.7229 32 1 7.5968 -1.0379 -1.9553 33 1 7.7244 0.5697 -2.7085 34 1 9.1812 -3.0892 -1.4024 35 1 7.2831 0.7412 -5.2678 36 1 8.0771 -2.0075 -6.5525 37 1 7.7220 -0.4453 -7.4664 38 1 9.6246 0.7033 -6.2426 39 1 9.9800 -0.8582 -5.3281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687805821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:02 Heat of formation + Delta-G solvation = -50.517716 kcal Electronic energy + Delta-G solvation = -17718.810071 eV Core-core repulsion = 14856.368059 eV Total energy + Delta-G solvation = -2862.442011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -38.35661 -37.27710 -36.80123 -33.90347 -31.98263 -30.34960 -29.03047 -26.35081 -25.13685 -23.28315 -22.47323 -21.37188 -20.63902 -19.56793 -16.92192 -16.72716 -16.12880 -15.51380 -15.34625 -15.25542 -15.02824 -14.53280 -13.86361 -13.49472 -13.11646 -12.59634 -12.46880 -11.90523 -11.85112 -11.64110 -11.21036 -11.10772 -10.90233 -10.70154 -10.61649 -10.39616 -10.08674 -9.94252 -9.76239 -9.59901 -9.50878 -9.22139 -9.19976 -8.42395 -6.53375 -5.74916 -3.35191 3.38228 3.47246 3.50405 3.71021 3.93231 4.49964 4.95917 4.98221 5.12470 5.20753 5.24537 5.26753 5.36552 5.43566 5.48603 5.57872 5.67636 5.72307 5.87157 5.96602 6.13555 6.15959 6.34246 6.48400 6.53757 6.61407 6.75393 6.84510 7.07799 7.09048 7.25050 7.28325 7.59501 7.72794 7.84495 8.51315 9.19071 9.82489 10.37874 11.20625 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.005361 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.923365 B = 5221.798048 C = 5998.437551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.383 6.383 6 C 0.066 3.934 7 C -0.131 4.131 8 C 0.149 3.851 9 N -0.552 5.552 10 C -0.254 4.254 11 H 0.066 0.934 12 C 0.010 3.990 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.287 1.287 18 C 0.121 3.879 19 C -0.196 4.196 20 C -0.222 4.222 21 H 0.085 0.915 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.025 0.975 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 8.576 3.939 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.302 6.302 6 C -0.010 4.010 7 C -0.171 4.171 8 C 0.022 3.978 9 N -0.268 5.268 10 C -0.384 4.384 11 H 0.084 0.916 12 C -0.190 4.190 13 N -0.528 5.528 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.012 3.988 19 C -0.235 4.235 20 C -0.263 4.263 21 H 0.103 0.897 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.813 8.248 3.936 14.158 hybrid contribution -0.199 -0.563 0.355 0.694 sum -11.012 7.685 4.291 14.098 Atomic orbital electron populations 1.22731 0.81449 1.02769 0.99601 1.88014 1.19265 1.27384 1.95291 1.22572 0.92919 0.85356 1.00413 1.22437 0.92842 0.97431 0.88837 1.87967 1.23570 1.81812 1.36875 1.22589 0.79779 0.98804 0.99866 1.22193 1.01033 1.00453 0.93387 1.20864 0.89242 0.96362 0.91283 1.43391 1.77227 1.02006 1.04174 1.19123 1.35733 0.81357 1.02144 0.91598 1.25106 0.96198 0.97909 0.99811 1.70055 1.32797 1.37132 1.12808 0.86353 0.77934 0.85362 0.77959 1.20006 1.21692 1.21319 1.21215 0.94914 0.94709 0.87963 1.23028 1.04634 1.00649 0.95168 1.23364 0.94968 1.01226 1.06786 0.89661 0.94432 0.94109 0.92256 0.92540 0.92724 0.92190 0.93459 0.94150 0.93184 0.91420 0.88134 0.95626 0.93659 0.89595 0.88502 0.90802 0.91287 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.42 10.67 -40.08 -0.43 -5.85 16 3 C 0.06 0.76 6.32 37.16 0.23 0.99 16 4 C 0.06 0.83 6.32 37.16 0.23 1.06 16 5 O -0.38 -6.81 10.31 -40.08 -0.41 -7.22 16 6 C 0.07 1.19 5.94 37.16 0.22 1.41 16 7 C -0.13 -2.73 5.91 -26.73 -0.16 -2.89 16 8 C 0.15 3.49 5.34 -4.05 -0.02 3.47 16 9 N -0.55 -13.89 2.78 -165.66 -0.46 -14.35 16 10 C -0.25 -6.94 8.63 -15.05 -0.13 -7.07 16 11 H 0.07 1.81 6.55 -52.49 -0.34 1.47 16 12 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 13 N -0.89 -25.33 11.33 55.49 0.63 -24.70 16 14 Si 0.89 21.81 29.61 -169.99 -5.03 16.77 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 C 0.12 2.67 6.56 -67.93 -0.45 2.22 16 19 C -0.20 -4.00 9.80 -26.69 -0.26 -4.26 16 20 C -0.22 -4.65 10.36 -26.69 -0.28 -4.93 16 21 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.10 2.65 5.35 -51.93 -0.28 2.37 16 33 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 35 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 36 H 0.10 2.14 6.37 -51.93 -0.33 1.81 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -30.57 323.95 -7.25 -37.82 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.85 Total: 1.04 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.42 Total: -8.39 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.17 Total: -39.06 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.84 Total: -13.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.57 -7.25 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687805821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.697 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds