Wall clock time and date at job start Mon Mar 30 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99800 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47181 * 65.00187 * 4 3 2 6 6 C 1.42899 * 114.00418 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47348 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47232 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47499 * 179.97438 * 8 7 6 10 10 C 1.36943 * 120.00274 * 270.00442 * 9 8 7 11 11 H 1.07997 * 120.00300 * 144.92526 * 10 9 8 12 12 C 1.38817 * 119.99408 * 324.92321 * 10 9 8 13 13 N 1.31620 * 120.00119 * 337.93451 * 12 10 9 14 14 Si 1.86796 * 119.99584 * 157.93810 * 12 10 9 15 15 H 1.48491 * 109.47473 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47099 * 120.00190 * 14 12 10 17 17 H 1.48498 * 109.47119 * 239.99265 * 14 12 10 18 18 C 1.46504 * 120.00237 * 89.99677 * 9 8 7 19 19 C 1.53000 * 117.49921 * 183.24237 * 18 9 8 20 20 C 1.52998 * 117.49703 * 114.57839 * 18 9 8 21 21 H 1.09008 * 109.46616 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47312 * 299.99579 * 1 2 3 23 23 H 1.08999 * 109.47304 * 60.00677 * 1 2 3 24 24 H 1.08995 * 109.47127 * 59.99879 * 3 2 1 25 25 H 1.08993 * 109.47099 * 299.99901 * 3 2 1 26 26 H 1.08995 * 109.47573 * 305.00399 * 4 3 2 27 27 H 1.08997 * 109.47414 * 184.99535 * 4 3 2 28 28 H 1.09005 * 109.47002 * 59.99783 * 6 5 4 29 29 H 1.08992 * 109.47025 * 300.00028 * 6 5 4 30 30 H 1.09005 * 109.47181 * 59.99973 * 7 6 5 31 31 H 1.09004 * 109.47441 * 300.00101 * 7 6 5 32 32 H 1.09005 * 109.47091 * 59.99879 * 8 7 6 33 33 H 1.08998 * 109.47356 * 300.00334 * 8 7 6 34 34 H 0.96995 * 119.99672 * 175.91349 * 13 12 10 35 35 H 1.09004 * 115.54877 * 328.91115 * 18 9 8 36 36 H 1.08998 * 117.50153 * 359.97438 * 19 18 9 37 37 H 1.08995 * 117.49708 * 145.02504 * 19 18 9 38 38 H 1.08995 * 117.49988 * 214.98174 * 20 18 9 39 39 H 1.08997 * 117.49880 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2349 -2.6613 8 6 7.2431 -0.4063 -2.7702 9 7 7.5729 -1.0338 -4.0522 10 6 7.6420 -2.3980 -4.1492 11 1 7.3237 -2.8918 -5.0554 12 6 8.1213 -3.1461 -3.0826 13 7 8.8947 -2.5831 -2.1787 14 14 7.6685 -4.9520 -2.9304 15 1 6.7940 -5.3405 -4.0658 16 1 8.9040 -5.7756 -2.9521 17 1 6.9473 -5.1754 -1.6517 18 6 7.8286 -0.2018 -5.2307 19 6 8.0930 -0.9176 -6.5569 20 6 9.2410 -0.2246 -5.8185 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8464 -0.8899 26 1 3.8508 0.5686 0.8426 27 1 3.9784 2.1766 0.0901 28 1 5.7363 -0.2120 -0.5075 29 1 5.8631 1.3960 -1.2602 30 1 5.3725 0.3965 -3.4762 31 1 5.2457 -1.2112 -2.7229 32 1 7.5968 -1.0379 -1.9553 33 1 7.7244 0.5697 -2.7085 34 1 9.1812 -3.0892 -1.4024 35 1 7.2831 0.7412 -5.2678 36 1 8.0771 -2.0075 -6.5525 37 1 7.7220 -0.4453 -7.4664 38 1 9.6246 0.7033 -6.2426 39 1 9.9800 -0.8582 -5.3281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687805821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:02 Heat of formation + Delta-G solvation = -69.430105 kcal Electronic energy + Delta-G solvation = -17719.630173 eV Core-core repulsion = 14856.368059 eV Total energy + Delta-G solvation = -2863.262114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.48657 -38.84075 -38.13505 -35.67557 -33.80014 -31.80815 -30.50014 -27.29065 -26.91819 -25.00632 -23.48590 -23.03789 -22.30280 -21.42976 -18.41971 -17.80436 -17.67667 -17.21390 -16.64483 -16.50153 -16.25649 -16.09011 -15.66887 -14.83649 -14.50759 -14.29441 -13.85916 -13.58710 -13.17750 -13.06657 -12.70144 -12.58300 -12.53361 -12.35913 -12.09326 -12.00602 -11.82196 -11.75771 -11.43254 -11.29913 -10.89626 -10.63789 -10.52054 -10.47110 -8.54356 -7.80402 -5.45090 1.42070 1.46292 1.55480 2.47288 2.71634 2.88919 3.15319 3.42299 3.57299 4.08100 4.14987 4.23671 4.31414 4.33453 4.45815 4.48661 4.50041 4.53244 4.57539 4.57688 4.64059 4.76543 4.79062 4.85108 4.94087 4.97093 5.08549 5.12075 5.36672 5.49116 5.55412 5.68594 5.83943 6.21292 6.36191 6.45513 7.14962 7.85717 8.34658 9.10644 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.005361 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.923365 B = 5221.798048 C = 5998.437551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.062 3.938 4 C 0.052 3.948 5 O -0.407 6.407 6 C 0.076 3.924 7 C -0.115 4.115 8 C 0.151 3.849 9 N -0.571 5.571 10 C -0.258 4.258 11 H 0.059 0.941 12 C -0.036 4.036 13 N -0.913 5.913 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.290 1.290 17 H -0.289 1.289 18 C 0.099 3.901 19 C -0.183 4.183 20 C -0.215 4.215 21 H 0.088 0.912 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.251 0.749 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 10.068 3.622 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.014 4.014 4 C -0.025 4.025 5 O -0.327 6.327 6 C -0.001 4.001 7 C -0.155 4.155 8 C 0.025 3.975 9 N -0.288 5.288 10 C -0.389 4.389 11 H 0.077 0.923 12 C -0.234 4.234 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.216 1.216 17 H -0.215 1.215 18 C -0.009 4.009 19 C -0.221 4.221 20 C -0.256 4.256 21 H 0.107 0.893 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.934 9.754 3.605 15.829 hybrid contribution 0.110 -0.959 0.430 1.057 sum -11.824 8.795 4.035 15.278 Atomic orbital electron populations 1.22911 0.79549 1.03556 1.01016 1.87954 1.21561 1.28999 1.95618 1.22722 0.91610 0.84875 1.02190 1.22785 0.94326 0.98468 0.86892 1.87915 1.22928 1.82654 1.39222 1.22366 0.80635 0.99548 0.97552 1.21908 0.98838 0.99155 0.95623 1.20752 0.90829 0.95936 0.89934 1.43607 1.77856 1.01803 1.05531 1.19265 1.34869 0.82860 1.01871 0.92340 1.25720 0.96593 1.01128 0.99920 1.70157 1.34018 1.38306 1.13260 0.85497 0.77499 0.81533 0.77714 1.19440 1.21645 1.21539 1.21545 0.96070 0.95732 0.87595 1.23041 1.03763 0.99459 0.95859 1.23270 0.93739 1.02068 1.06513 0.89347 0.92219 0.93406 0.88838 0.92214 0.93094 0.89308 0.94349 0.91646 0.92526 0.94624 0.91118 0.94488 0.93949 0.87015 0.90867 0.87018 0.87811 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.53 10.67 -144.34 -1.54 -13.07 16 3 C 0.06 1.34 6.32 71.98 0.45 1.79 16 4 C 0.05 1.29 6.32 71.98 0.45 1.75 16 5 O -0.41 -14.10 10.31 -144.34 -1.49 -15.59 16 6 C 0.08 2.67 5.94 71.98 0.43 3.09 16 7 C -0.12 -4.82 5.91 30.59 0.18 -4.64 16 8 C 0.15 7.16 5.34 86.38 0.46 7.62 16 9 N -0.57 -28.87 2.78 -678.03 -1.88 -30.76 16 10 C -0.26 -14.35 8.63 84.03 0.73 -13.63 16 11 H 0.06 3.27 6.55 -2.91 -0.02 3.26 16 12 C -0.04 -2.05 4.96 84.86 0.42 -1.63 16 13 N -0.91 -53.56 11.33 21.65 0.25 -53.31 16 14 Si 0.95 45.72 29.61 68.60 2.03 47.75 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 C 0.10 4.20 6.56 44.99 0.30 4.50 16 19 C -0.18 -7.11 9.80 30.62 0.30 -6.81 16 20 C -0.22 -8.67 10.36 30.62 0.32 -8.36 16 21 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 3.83 5.35 -2.38 -0.01 3.82 16 33 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.25 14.20 8.32 -92.71 -0.77 13.43 16 35 H 0.11 4.15 8.14 -2.38 -0.02 4.13 16 36 H 0.07 3.20 6.37 -2.39 -0.02 3.19 16 37 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -66.81 323.95 3.64 -63.16 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.99 Total: 16.42 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.29 Total: -14.61 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.64 Total: -84.07 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -3.03 Total: -28.66 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -66.81 3.64 -63.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687805821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.265 kcal (2) G-P(sol) polarization free energy of solvation -66.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds