Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99652 * 2 1 4 4 C 1.52995 * 110.90838 * 61.93884 * 3 2 1 5 5 N 1.46907 * 109.47019 * 67.13070 * 4 3 2 6 6 C 1.46895 * 111.00135 * 293.95230 * 5 4 3 7 7 C 1.46900 * 110.99965 * 169.99522 * 5 4 3 8 8 H 1.09006 * 109.46986 * 60.00090 * 7 5 4 9 9 C 1.52989 * 109.47436 * 300.00367 * 7 5 4 10 10 C 1.50702 * 109.47244 * 179.97438 * 7 5 4 11 11 H 1.08007 * 119.99622 * 0.02562 * 10 7 5 12 12 C 1.37875 * 120.00133 * 180.02562 * 10 7 5 13 13 N 1.31506 * 120.00190 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99915 * 180.02562 * 12 10 7 15 15 H 1.48509 * 109.47320 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47319 * 119.99997 * 14 12 10 17 17 H 1.48506 * 109.47141 * 240.00029 * 14 12 10 18 18 C 1.55303 * 110.84595 * 298.35580 * 3 2 1 19 19 C 1.54942 * 100.94290 * 275.94351 * 18 3 2 20 20 O 1.43649 * 105.13471 * 323.55569 * 19 18 3 21 21 C 1.43235 * 109.97219 * 24.42868 * 20 19 18 22 22 H 1.09000 * 109.47327 * 304.74693 * 1 2 3 23 23 H 1.08997 * 109.47131 * 64.75212 * 1 2 3 24 24 H 1.09005 * 109.46800 * 184.75576 * 1 2 3 25 25 H 1.08996 * 109.47172 * 187.12679 * 4 3 2 26 26 H 1.09000 * 109.47549 * 307.13187 * 4 3 2 27 27 H 1.09003 * 109.46973 * 59.99750 * 6 5 4 28 28 H 1.08998 * 109.47527 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.47022 * 300.00386 * 6 5 4 30 30 H 1.08995 * 109.47774 * 59.99865 * 9 7 5 31 31 H 1.09002 * 109.47619 * 179.97438 * 9 7 5 32 32 H 1.09004 * 109.47246 * 299.99548 * 9 7 5 33 33 H 0.97001 * 120.00730 * 180.02562 * 13 12 10 34 34 H 1.09003 * 111.12660 * 33.86576 * 18 3 2 35 35 H 1.09008 * 111.12090 * 158.02600 * 18 3 2 36 36 H 1.09006 * 110.30931 * 204.64513 * 19 18 3 37 37 H 1.08994 * 110.39588 * 82.51903 * 19 18 3 38 38 H 1.08995 * 109.83348 * 238.76866 * 21 20 19 39 39 H 1.09005 * 109.82895 * 117.79848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6180 2.0778 1.2612 5 7 2.2343 1.4443 2.4347 6 6 1.6806 0.1025 2.6602 7 6 2.0794 2.2854 3.6291 8 1 1.0191 2.4382 3.8308 9 6 2.7533 3.6381 3.3913 10 6 2.7218 1.6042 4.8099 11 1 3.1980 0.6428 4.6854 12 6 2.7017 2.2083 6.0492 13 7 2.1215 3.3786 6.2008 14 14 3.4986 1.3642 7.5127 15 1 4.0778 0.0667 7.0809 16 1 4.5748 2.2301 8.0579 17 1 2.4764 1.1245 8.5629 18 6 1.6052 2.0908 -1.2772 19 6 2.6608 1.5743 -2.2871 20 8 3.8659 1.4156 -1.5217 21 6 3.5456 1.2235 -0.1389 22 1 -0.3634 0.5857 0.8444 23 1 -0.3633 0.4383 -0.9295 24 1 -0.3633 -1.0242 0.0852 25 1 1.9659 3.1075 1.1796 26 1 0.5336 2.0682 1.3707 27 1 1.8709 -0.5206 1.7863 28 1 2.1538 -0.3435 3.5350 29 1 0.6059 0.1762 2.8268 30 1 2.2883 4.1306 2.5373 31 1 2.6379 4.2624 4.2773 32 1 3.8136 3.4854 3.1896 33 1 2.1076 3.8038 7.0726 34 1 0.5960 1.8294 -1.5956 35 1 1.7009 3.1658 -1.1243 36 1 2.8114 2.3036 -3.0831 37 1 2.3496 0.6173 -2.7057 38 1 4.0134 2.0040 0.4610 39 1 3.8947 0.2442 0.1889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692797268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = -71.855286 kcal Electronic energy + Delta-G solvation = -19241.211140 eV Core-core repulsion = 16377.843862 eV Total energy + Delta-G solvation = -2863.367278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13232 -37.28087 -36.13945 -32.82044 -31.41048 -29.61380 -28.90187 -27.01390 -25.99922 -24.58732 -23.25509 -22.27558 -20.24090 -19.17412 -17.21688 -16.39253 -16.02298 -15.30050 -15.20595 -14.95487 -14.56591 -14.09577 -13.79418 -13.63453 -13.00138 -12.73749 -12.38513 -11.99191 -11.91487 -11.70125 -11.36547 -11.20181 -11.04048 -10.96107 -10.71551 -10.60974 -10.35678 -10.16647 -10.09031 -9.92127 -9.33071 -9.14252 -8.78344 -8.42794 -7.15558 -6.01856 -4.05790 3.29654 3.37639 3.42457 3.79406 4.04140 4.37620 4.48893 4.82931 4.99139 5.22910 5.26863 5.29446 5.33593 5.39262 5.57752 5.67540 5.73893 5.78606 5.91807 5.99868 6.03383 6.16869 6.36886 6.41975 6.51096 6.80835 6.97147 7.02082 7.12417 7.15988 7.36465 7.50532 7.71439 7.83105 8.19964 8.31761 8.59095 9.01388 9.59360 11.05229 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.006316 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.090438 B = 4431.937906 C = 4591.727228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.363 6.363 3 C 0.091 3.909 4 C 0.035 3.965 5 N -0.530 5.530 6 C 0.023 3.977 7 C 0.210 3.790 8 H -0.005 1.005 9 C -0.134 4.134 10 C -0.500 4.500 11 H 0.065 0.935 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.286 1.286 18 C -0.185 4.185 19 C 0.059 3.941 20 O -0.389 6.389 21 C 0.081 3.919 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -2.816 -13.391 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.282 6.282 3 C 0.051 3.949 4 C -0.094 4.094 5 N -0.254 5.254 6 C -0.125 4.125 7 C 0.104 3.896 8 H 0.013 0.987 9 C -0.192 4.192 10 C -0.539 4.539 11 H 0.083 0.917 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.212 1.212 18 C -0.223 4.223 19 C -0.017 4.017 20 O -0.309 6.309 21 C 0.005 3.995 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.025 0.975 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.367 -2.898 -13.396 13.909 hybrid contribution -1.110 -0.011 1.190 1.627 sum -3.478 -2.909 -12.207 13.022 Atomic orbital electron populations 1.22805 0.81880 1.02571 1.00012 1.87969 1.19262 1.26662 1.94320 1.23085 0.94509 0.83484 0.93791 1.22561 0.96835 0.98771 0.91191 1.62140 1.55482 1.03291 1.04484 1.22603 0.95799 0.91693 1.02368 1.19267 0.94525 0.89936 0.85831 0.98702 1.21866 0.98791 0.98818 0.99699 1.21196 1.35646 1.04999 0.92045 0.91705 1.24933 0.95533 0.94997 0.98857 1.69896 1.44453 1.15533 1.23554 0.86469 0.79031 0.79668 0.82416 1.19702 1.21023 1.21213 1.23856 1.00536 1.01593 0.96347 1.23220 0.84423 0.99885 0.94195 1.88380 1.29324 1.94057 1.19154 1.23012 0.91591 1.03357 0.81584 0.93354 0.94363 0.89801 0.89614 0.95438 0.90738 0.91086 0.97953 0.97494 0.89641 0.94548 0.93079 0.89739 0.89342 0.90171 0.92358 0.88721 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 101.05 0.99 1.28 16 2 O -0.36 -5.56 7.55 -35.23 -0.27 -5.82 16 3 C 0.09 1.39 0.52 -88.68 -0.05 1.35 16 4 C 0.04 0.63 3.74 -3.82 -0.01 0.61 16 5 N -0.53 -11.21 4.17 -236.29 -0.98 -12.19 16 6 C 0.02 0.47 8.08 60.06 0.49 0.96 16 7 C 0.21 5.26 2.06 -68.87 -0.14 5.12 16 8 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 9 C -0.13 -3.22 8.76 37.15 0.33 -2.89 16 10 C -0.50 -13.65 7.88 -34.44 -0.27 -13.92 16 11 H 0.06 1.78 6.40 -52.48 -0.34 1.44 16 12 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 13 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 14 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.19 -2.28 6.14 -24.48 -0.15 -2.43 16 19 C 0.06 0.74 7.77 38.18 0.30 1.03 16 20 O -0.39 -6.16 11.36 -35.23 -0.40 -6.56 16 21 C 0.08 1.32 6.75 37.88 0.26 1.57 16 22 H 0.05 0.66 5.50 -51.93 -0.29 0.37 16 23 H 0.04 0.40 6.40 -51.93 -0.33 0.07 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.53 5.71 -51.93 -0.30 1.23 16 26 H 0.03 0.49 6.27 -51.93 -0.33 0.16 16 27 H 0.07 1.38 5.22 -51.93 -0.27 1.11 16 28 H 0.07 1.55 6.10 -51.93 -0.32 1.23 16 29 H 0.00 0.04 7.65 -51.92 -0.40 -0.36 16 30 H 0.01 0.13 6.20 -51.93 -0.32 -0.19 16 31 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.08 0.90 6.14 -51.93 -0.32 0.58 16 35 H 0.09 1.04 7.95 -51.92 -0.41 0.62 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.63 7.81 -51.93 -0.41 1.23 16 39 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -29.07 292.56 -6.00 -35.08 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.00 Total: -0.60 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 1.64 Total: -5.82 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.36 Total: -37.04 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.67 Total: -12.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.07 -6.00 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692797268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.780 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds