Wall clock time and date at job start Mon Mar 30 2020 03:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99652 * 2 1 4 4 C 1.52995 * 110.90838 * 61.93884 * 3 2 1 5 5 N 1.46907 * 109.47019 * 67.13070 * 4 3 2 6 6 C 1.46895 * 111.00135 * 293.95230 * 5 4 3 7 7 C 1.46900 * 110.99965 * 169.99522 * 5 4 3 8 8 H 1.09006 * 109.46986 * 60.00090 * 7 5 4 9 9 C 1.52989 * 109.47436 * 300.00367 * 7 5 4 10 10 C 1.50702 * 109.47244 * 179.97438 * 7 5 4 11 11 H 1.08007 * 119.99622 * 0.02562 * 10 7 5 12 12 C 1.37875 * 120.00133 * 180.02562 * 10 7 5 13 13 N 1.31506 * 120.00190 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99915 * 180.02562 * 12 10 7 15 15 H 1.48509 * 109.47320 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47319 * 119.99997 * 14 12 10 17 17 H 1.48506 * 109.47141 * 240.00029 * 14 12 10 18 18 C 1.55303 * 110.84595 * 298.35580 * 3 2 1 19 19 C 1.54942 * 100.94290 * 275.94351 * 18 3 2 20 20 O 1.43649 * 105.13471 * 323.55569 * 19 18 3 21 21 C 1.43235 * 109.97219 * 24.42868 * 20 19 18 22 22 H 1.09000 * 109.47327 * 304.74693 * 1 2 3 23 23 H 1.08997 * 109.47131 * 64.75212 * 1 2 3 24 24 H 1.09005 * 109.46800 * 184.75576 * 1 2 3 25 25 H 1.08996 * 109.47172 * 187.12679 * 4 3 2 26 26 H 1.09000 * 109.47549 * 307.13187 * 4 3 2 27 27 H 1.09003 * 109.46973 * 59.99750 * 6 5 4 28 28 H 1.08998 * 109.47527 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.47022 * 300.00386 * 6 5 4 30 30 H 1.08995 * 109.47774 * 59.99865 * 9 7 5 31 31 H 1.09002 * 109.47619 * 179.97438 * 9 7 5 32 32 H 1.09004 * 109.47246 * 299.99548 * 9 7 5 33 33 H 0.97001 * 120.00730 * 180.02562 * 13 12 10 34 34 H 1.09003 * 111.12660 * 33.86576 * 18 3 2 35 35 H 1.09008 * 111.12090 * 158.02600 * 18 3 2 36 36 H 1.09006 * 110.30931 * 204.64513 * 19 18 3 37 37 H 1.08994 * 110.39588 * 82.51903 * 19 18 3 38 38 H 1.08995 * 109.83348 * 238.76866 * 21 20 19 39 39 H 1.09005 * 109.82895 * 117.79848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6180 2.0778 1.2612 5 7 2.2343 1.4443 2.4347 6 6 1.6806 0.1025 2.6602 7 6 2.0794 2.2854 3.6291 8 1 1.0191 2.4382 3.8308 9 6 2.7533 3.6381 3.3913 10 6 2.7218 1.6042 4.8099 11 1 3.1980 0.6428 4.6854 12 6 2.7017 2.2083 6.0492 13 7 2.1215 3.3786 6.2008 14 14 3.4986 1.3642 7.5127 15 1 4.0778 0.0667 7.0809 16 1 4.5748 2.2301 8.0579 17 1 2.4764 1.1245 8.5629 18 6 1.6052 2.0908 -1.2772 19 6 2.6608 1.5743 -2.2871 20 8 3.8659 1.4156 -1.5217 21 6 3.5456 1.2235 -0.1389 22 1 -0.3634 0.5857 0.8444 23 1 -0.3633 0.4383 -0.9295 24 1 -0.3633 -1.0242 0.0852 25 1 1.9659 3.1075 1.1796 26 1 0.5336 2.0682 1.3707 27 1 1.8709 -0.5206 1.7863 28 1 2.1538 -0.3435 3.5350 29 1 0.6059 0.1762 2.8268 30 1 2.2883 4.1306 2.5373 31 1 2.6379 4.2624 4.2773 32 1 3.8136 3.4854 3.1896 33 1 2.1076 3.8038 7.0726 34 1 0.5960 1.8294 -1.5956 35 1 1.7009 3.1658 -1.1243 36 1 2.8114 2.3036 -3.0831 37 1 2.3496 0.6173 -2.7057 38 1 4.0134 2.0040 0.4610 39 1 3.8947 0.2442 0.1889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692797268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:08 Heat of formation + Delta-G solvation = -92.179430 kcal Electronic energy + Delta-G solvation = -19242.092461 eV Core-core repulsion = 16377.843862 eV Total energy + Delta-G solvation = -2864.248599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34392 -38.68434 -37.61164 -34.76479 -32.67231 -31.20634 -30.38551 -28.42163 -27.33760 -26.42229 -24.91074 -23.39801 -21.72912 -20.75547 -18.57567 -18.14896 -17.41599 -16.80041 -16.53986 -16.26153 -15.89307 -15.57186 -15.33518 -15.11529 -14.66501 -14.08506 -13.82029 -13.71293 -13.17023 -13.05019 -12.92322 -12.68531 -12.58347 -12.43252 -12.39191 -12.19574 -12.05111 -11.93096 -11.77476 -11.52114 -10.91985 -10.52087 -10.48318 -10.32237 -8.89072 -8.12374 -6.23336 1.40016 1.42358 1.53968 2.41349 2.66807 2.93552 3.14787 3.21385 3.61327 3.75457 3.97290 4.23867 4.27741 4.38173 4.41836 4.52766 4.66790 4.69224 4.72522 4.75066 4.79231 4.82264 4.93719 4.97645 5.00210 5.02881 5.12476 5.21192 5.34652 5.49995 5.72607 5.78701 5.99598 6.24601 6.25950 6.39068 6.72673 6.91819 7.45870 8.93926 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.006316 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.090438 B = 4431.937906 C = 4591.727228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.378 6.378 3 C 0.095 3.905 4 C 0.037 3.963 5 N -0.534 5.534 6 C 0.034 3.966 7 C 0.215 3.785 8 H -0.040 1.040 9 C -0.121 4.121 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.011 3.989 13 N -0.921 5.921 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.175 4.175 19 C 0.054 3.946 20 O -0.405 6.405 21 C 0.084 3.916 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.048 0.952 29 H -0.001 1.001 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -3.221 -14.838 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.298 6.298 3 C 0.055 3.945 4 C -0.091 4.091 5 N -0.258 5.258 6 C -0.114 4.114 7 C 0.109 3.891 8 H -0.023 1.023 9 C -0.180 4.180 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.784 3.216 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.213 4.213 19 C -0.022 4.022 20 O -0.325 6.325 21 C 0.007 3.993 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.701 -3.310 -14.865 15.467 hybrid contribution -1.057 0.100 1.566 1.892 sum -3.759 -3.210 -13.300 14.188 Atomic orbital electron populations 1.22981 0.80298 1.03700 1.00662 1.87929 1.20946 1.26519 1.94359 1.22931 0.93950 0.83808 0.93807 1.22615 0.96732 0.98923 0.90847 1.62072 1.56387 1.03281 1.04097 1.22519 0.95221 0.91400 1.02257 1.19062 0.92123 0.90895 0.87063 1.02263 1.21670 0.98649 0.98120 0.99516 1.21461 1.35770 1.04956 0.93324 0.92400 1.25687 0.96039 0.95598 1.01405 1.70014 1.45297 1.16598 1.24185 0.85498 0.78181 0.78742 0.79162 1.19319 1.20539 1.20729 1.23842 1.01698 1.01547 0.94225 1.23472 0.83202 1.01160 0.94318 1.88365 1.31240 1.94112 1.18817 1.22830 0.92383 1.01976 0.82101 0.94864 0.91823 0.88183 0.89770 0.95196 0.88785 0.93284 0.98199 0.94938 0.92213 0.94868 0.92961 0.87536 0.88571 0.87609 0.91582 0.90215 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.80 113.37 1.11 1.54 16 2 O -0.38 -10.79 7.55 -148.98 -1.12 -11.91 16 3 C 0.10 2.74 0.52 -9.54 0.00 2.73 16 4 C 0.04 1.29 3.74 86.30 0.32 1.61 16 5 N -0.53 -22.72 4.17 -901.48 -3.76 -26.47 16 6 C 0.03 1.37 8.08 127.69 1.03 2.41 16 7 C 0.22 10.99 2.06 44.17 0.09 11.08 16 8 H -0.04 -2.29 8.14 -2.38 -0.02 -2.31 16 9 C -0.12 -5.91 8.76 71.98 0.63 -5.28 16 10 C -0.52 -28.70 7.88 25.60 0.20 -28.49 16 11 H 0.06 3.23 6.40 -2.91 -0.02 3.21 16 12 C 0.01 0.62 5.30 84.66 0.45 1.07 16 13 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 14 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 C -0.18 -3.75 6.14 32.05 0.20 -3.55 16 19 C 0.05 1.17 7.77 72.65 0.56 1.74 16 20 O -0.41 -12.12 11.36 -148.98 -1.69 -13.81 16 21 C 0.08 2.66 6.75 72.45 0.49 3.15 16 22 H 0.03 0.84 5.50 -2.39 -0.01 0.83 16 23 H 0.06 1.10 6.40 -2.39 -0.02 1.08 16 24 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.08 2.91 5.71 -2.39 -0.01 2.90 16 26 H 0.03 1.03 6.27 -2.39 -0.01 1.02 16 27 H 0.09 3.42 5.22 -2.39 -0.01 3.41 16 28 H 0.05 2.17 6.10 -2.39 -0.01 2.16 16 29 H 0.00 -0.02 7.65 -2.38 -0.02 -0.04 16 30 H 0.03 1.36 6.20 -2.39 -0.01 1.35 16 31 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.11 1.82 6.14 -2.39 -0.01 1.80 16 35 H 0.10 1.94 7.95 -2.38 -0.02 1.92 16 36 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 2.74 7.81 -2.39 -0.02 2.73 16 39 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 Total: -1.00 -62.53 292.56 1.81 -60.72 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.03 Total: 10.25 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.08 Total: -11.99 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.51 Total: -79.42 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -2.82 Total: -25.72 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -62.53 1.81 -60.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692797268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.460 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds