Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 6 6 C 1.53002 * 109.46817 * 184.99807 * 4 3 2 7 7 N 1.46906 * 109.46937 * 180.02562 * 6 4 3 8 8 C 1.47848 * 110.99401 * 290.84138 * 7 6 4 9 9 C 1.54906 * 104.79389 * 213.63484 * 8 7 6 10 10 C 1.55143 * 101.65347 * 37.07064 * 9 8 7 11 11 H 1.09004 * 110.85560 * 82.79666 * 10 9 8 12 12 C 1.50694 * 110.70823 * 205.96380 * 10 9 8 13 13 H 1.07998 * 120.00295 * 113.60280 * 12 10 9 14 14 C 1.37879 * 119.99786 * 293.59891 * 12 10 9 15 15 N 1.31506 * 120.00327 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99863 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47431 * 59.99889 * 16 14 12 18 18 H 1.48500 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47128 * 300.00075 * 16 14 12 20 20 C 1.47438 * 111.00256 * 170.00135 * 7 6 4 21 21 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 22 22 C 1.42902 * 113.99874 * 270.00076 * 21 4 3 23 23 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 24 24 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 27 27 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.47075 * 299.99262 * 6 4 3 29 29 H 1.08996 * 109.47407 * 60.00219 * 6 4 3 30 30 H 1.09002 * 110.37801 * 332.46628 * 8 7 6 31 31 H 1.09005 * 110.37417 * 94.81213 * 8 7 6 32 32 H 1.09000 * 110.99391 * 278.97980 * 9 8 7 33 33 H 1.09005 * 111.02359 * 155.17479 * 9 8 7 34 34 H 0.97005 * 120.00665 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88836 * 242.66549 * 20 7 6 36 36 H 1.09001 * 109.88475 * 3.84672 * 20 7 6 37 37 H 1.09002 * 109.47082 * 300.00110 * 22 21 4 38 38 H 1.08997 * 109.47374 * 59.99540 * 22 21 4 39 39 H 1.09001 * 109.47118 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8515 0.5683 0.8410 6 6 4.1573 2.5769 0.1250 7 7 5.6218 2.4610 0.1238 8 6 6.1034 1.8190 1.3655 9 6 7.4670 2.4938 1.6565 10 6 7.1925 3.9567 1.2189 11 1 6.6948 4.5126 2.0136 12 6 8.4726 4.6409 0.8138 13 1 8.6253 4.9363 -0.2137 14 6 9.4488 4.8900 1.7550 15 7 9.2627 4.5310 3.0064 16 14 11.0353 5.7388 1.2530 17 1 10.7245 7.0795 0.6952 18 1 11.9142 5.8879 2.4407 19 1 11.7289 4.9232 0.2239 20 6 6.2567 3.7863 0.0038 21 8 3.9649 0.5796 -1.2219 22 6 4.0463 -0.8460 -1.1671 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8414 3.1933 -0.7166 29 1 3.8299 3.0384 1.0566 30 1 5.4065 2.0035 2.1831 31 1 6.2352 0.7478 1.2124 32 1 8.2594 2.0485 1.0548 33 1 7.7100 2.4428 2.7179 34 1 9.9494 4.7065 3.6687 35 1 6.8341 3.8386 -0.9192 36 1 5.4939 4.5648 0.0111 37 1 4.7575 -1.1399 -0.3951 38 1 3.0647 -1.2573 -0.9322 39 1 4.3786 -1.2284 -2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694701636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -90.357615 kcal Electronic energy + Delta-G solvation = -18249.916175 eV Core-core repulsion = 15385.746576 eV Total energy + Delta-G solvation = -2864.169599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.04081 -37.77107 -36.70491 -33.32984 -31.70076 -29.38996 -28.22429 -27.04488 -25.93901 -24.89685 -23.55121 -21.43896 -19.79203 -19.46667 -16.87435 -16.63623 -16.48970 -15.95028 -15.26955 -14.97383 -14.55482 -14.22430 -13.88101 -13.83007 -13.25089 -12.62529 -12.46075 -12.31359 -11.94093 -11.69749 -11.45447 -11.35262 -10.99435 -10.97689 -10.66892 -10.56466 -10.44447 -10.17917 -9.83862 -9.62175 -9.32558 -9.18589 -8.84637 -8.36856 -7.51949 -6.00503 -4.02764 3.34240 3.38432 3.41572 3.54266 4.00112 4.45373 4.68361 5.03761 5.10072 5.14533 5.20340 5.27868 5.32611 5.42828 5.48445 5.56583 5.68006 5.75394 5.82640 5.89376 5.98295 6.05833 6.20937 6.25107 6.38495 6.61449 6.91275 6.97373 7.18470 7.21654 7.46494 7.61774 7.63919 7.86322 7.92832 8.02093 8.44207 8.98844 9.61039 11.09641 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.053521 B = 0.004451 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.033627 B = 6289.516276 C = 6369.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.038 3.962 4 C 0.101 3.899 5 H 0.066 0.934 6 C 0.057 3.943 7 N -0.521 5.521 8 C 0.036 3.964 9 C -0.104 4.104 10 C 0.034 3.966 11 H 0.030 0.970 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.049 3.951 21 O -0.362 6.362 22 C 0.034 3.966 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -7.961 -4.034 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.039 4.039 4 C 0.042 3.958 5 H 0.084 0.916 6 C -0.072 4.072 7 N -0.245 5.245 8 C -0.092 4.092 9 C -0.143 4.143 10 C 0.015 3.985 11 H 0.048 0.952 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.078 4.078 21 O -0.280 6.280 22 C -0.062 4.062 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.344 -8.315 -4.457 17.168 hybrid contribution 0.277 0.980 0.784 1.285 sum -14.066 -7.335 -3.673 16.284 Atomic orbital electron populations 1.22726 0.81396 1.02509 0.99896 1.87874 1.19493 1.27982 1.95408 1.23244 0.94971 0.84948 1.00786 1.22103 0.89675 0.95594 0.88456 0.91599 1.22224 0.90504 0.93899 1.00586 1.63524 1.03187 1.21528 1.36258 1.23180 0.98271 0.98295 0.89453 1.22626 0.93063 0.97400 1.01170 1.19819 0.94105 0.92801 0.91804 0.95189 1.21052 1.00736 1.38145 0.94931 0.92464 1.24977 0.98433 0.95591 0.94928 1.69946 1.34357 1.47239 1.01473 0.86664 0.83379 0.80109 0.77875 1.20302 1.21395 1.20202 1.23003 0.96487 0.86691 1.01630 1.87944 1.87801 1.19235 1.33026 1.22760 1.00200 0.81697 1.01576 0.94129 0.89823 0.94215 0.92603 0.92388 0.90529 0.93812 0.95162 0.92310 0.92433 0.91313 0.93029 0.91122 0.94925 0.94556 0.93316 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.78 8.83 -40.08 -0.35 -5.14 16 3 C 0.04 0.46 5.60 37.16 0.21 0.67 16 4 C 0.10 1.49 2.49 -26.73 -0.07 1.42 16 5 H 0.07 1.00 7.14 -51.93 -0.37 0.63 16 6 C 0.06 0.92 4.26 -3.82 -0.02 0.91 16 7 N -0.52 -10.25 5.03 -231.25 -1.16 -11.41 16 8 C 0.04 0.70 5.78 -2.30 -0.01 0.69 16 9 C -0.10 -2.46 5.94 -24.59 -0.15 -2.61 16 10 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.51 -14.10 8.47 -34.44 -0.29 -14.39 16 13 H 0.06 1.56 7.53 -52.49 -0.40 1.17 16 14 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 15 N -0.89 -25.68 12.48 55.43 0.69 -24.99 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C 0.05 1.06 6.45 -2.84 -0.02 1.04 16 21 O -0.36 -5.89 10.21 -40.08 -0.41 -6.30 16 22 C 0.03 0.46 10.71 101.05 1.08 1.54 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 29 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 1.60 7.63 -51.93 -0.40 1.20 16 36 H 0.03 0.66 7.55 -51.93 -0.39 0.26 16 37 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.05 0.62 6.40 -51.93 -0.33 0.29 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -29.82 313.33 -6.89 -36.71 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.86 Total: -2.89 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 1.50 Total: -7.10 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.47 Total: -36.40 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.76 Total: -11.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.82 -6.89 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694701636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.646 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds