Wall clock time and date at job start Mon Mar 30 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 6 6 C 1.53002 * 109.46817 * 184.99807 * 4 3 2 7 7 N 1.46906 * 109.46937 * 180.02562 * 6 4 3 8 8 C 1.47848 * 110.99401 * 290.84138 * 7 6 4 9 9 C 1.54906 * 104.79389 * 213.63484 * 8 7 6 10 10 C 1.55143 * 101.65347 * 37.07064 * 9 8 7 11 11 H 1.09004 * 110.85560 * 82.79666 * 10 9 8 12 12 C 1.50694 * 110.70823 * 205.96380 * 10 9 8 13 13 H 1.07998 * 120.00295 * 113.60280 * 12 10 9 14 14 C 1.37879 * 119.99786 * 293.59891 * 12 10 9 15 15 N 1.31506 * 120.00327 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99863 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47431 * 59.99889 * 16 14 12 18 18 H 1.48500 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47128 * 300.00075 * 16 14 12 20 20 C 1.47438 * 111.00256 * 170.00135 * 7 6 4 21 21 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 22 22 C 1.42902 * 113.99874 * 270.00076 * 21 4 3 23 23 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 24 24 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 27 27 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.47075 * 299.99262 * 6 4 3 29 29 H 1.08996 * 109.47407 * 60.00219 * 6 4 3 30 30 H 1.09002 * 110.37801 * 332.46628 * 8 7 6 31 31 H 1.09005 * 110.37417 * 94.81213 * 8 7 6 32 32 H 1.09000 * 110.99391 * 278.97980 * 9 8 7 33 33 H 1.09005 * 111.02359 * 155.17479 * 9 8 7 34 34 H 0.97005 * 120.00665 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88836 * 242.66549 * 20 7 6 36 36 H 1.09001 * 109.88475 * 3.84672 * 20 7 6 37 37 H 1.09002 * 109.47082 * 300.00110 * 22 21 4 38 38 H 1.08997 * 109.47374 * 59.99540 * 22 21 4 39 39 H 1.09001 * 109.47118 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8515 0.5683 0.8410 6 6 4.1573 2.5769 0.1250 7 7 5.6218 2.4610 0.1238 8 6 6.1034 1.8190 1.3655 9 6 7.4670 2.4938 1.6565 10 6 7.1925 3.9567 1.2189 11 1 6.6948 4.5126 2.0136 12 6 8.4726 4.6409 0.8138 13 1 8.6253 4.9363 -0.2137 14 6 9.4488 4.8900 1.7550 15 7 9.2627 4.5310 3.0064 16 14 11.0353 5.7388 1.2530 17 1 10.7245 7.0795 0.6952 18 1 11.9142 5.8879 2.4407 19 1 11.7289 4.9232 0.2239 20 6 6.2567 3.7863 0.0038 21 8 3.9649 0.5796 -1.2219 22 6 4.0463 -0.8460 -1.1671 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8414 3.1933 -0.7166 29 1 3.8299 3.0384 1.0566 30 1 5.4065 2.0035 2.1831 31 1 6.2352 0.7478 1.2124 32 1 8.2594 2.0485 1.0548 33 1 7.7100 2.4428 2.7179 34 1 9.9494 4.7065 3.6687 35 1 6.8341 3.8386 -0.9192 36 1 5.4939 4.5648 0.0111 37 1 4.7575 -1.1399 -0.3951 38 1 3.0647 -1.2573 -0.9322 39 1 4.3786 -1.2284 -2.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694701636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:58 Heat of formation + Delta-G solvation = -110.909563 kcal Electronic energy + Delta-G solvation = -18250.807374 eV Core-core repulsion = 15385.746576 eV Total energy + Delta-G solvation = -2865.060798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31097 -39.11594 -37.78783 -35.19144 -33.28220 -30.85544 -30.02206 -27.98455 -27.05910 -26.43682 -25.08140 -22.72896 -21.43102 -21.27191 -18.57448 -17.91112 -17.67292 -17.00705 -16.59931 -16.29632 -16.14129 -15.70226 -15.26297 -14.92843 -14.61534 -14.33465 -13.95894 -13.47430 -13.37405 -13.05155 -12.94638 -12.82638 -12.59049 -12.53086 -12.37336 -12.05320 -11.91803 -11.74924 -11.52056 -11.15300 -10.92299 -10.68130 -10.48095 -10.33232 -9.10068 -8.13586 -6.22834 1.42650 1.44285 1.51744 2.43632 2.62255 2.90312 3.17892 3.31032 4.00114 4.03804 4.12851 4.20832 4.30325 4.40330 4.48666 4.53227 4.55167 4.56556 4.63061 4.65844 4.67581 4.78444 4.85433 4.87285 4.93953 5.01415 5.02717 5.28392 5.34065 5.58503 5.71452 5.87888 6.15146 6.16507 6.29200 6.35401 6.44404 6.85406 7.44418 8.95840 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.053521 B = 0.004451 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.033627 B = 6289.516276 C = 6369.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.044 3.956 4 C 0.103 3.897 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.528 5.528 8 C 0.050 3.950 9 C -0.098 4.098 10 C 0.026 3.974 11 H 0.003 0.997 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.061 3.939 21 O -0.386 6.386 22 C 0.035 3.965 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.824 -8.241 -4.669 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.033 4.033 4 C 0.044 3.956 5 H 0.078 0.922 6 C -0.073 4.073 7 N -0.252 5.252 8 C -0.077 4.077 9 C -0.136 4.136 10 C 0.007 3.993 11 H 0.022 0.978 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.781 3.219 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.067 4.067 21 O -0.305 6.305 22 C -0.062 4.062 23 H 0.066 0.934 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.468 -8.601 -5.101 18.419 hybrid contribution 0.565 1.037 0.983 1.536 sum -14.903 -7.564 -4.118 17.213 Atomic orbital electron populations 1.22927 0.79506 1.03807 1.00793 1.87828 1.21516 1.27904 1.95594 1.23097 0.93101 0.85327 1.01791 1.22056 0.91420 0.94271 0.87846 0.92189 1.22321 0.88071 0.95432 1.01501 1.63494 1.05558 1.20115 1.36021 1.23032 0.96026 0.98625 0.90056 1.22412 0.94858 0.97070 0.99301 1.19791 0.93969 0.93013 0.92550 0.97845 1.21415 1.02011 1.38538 0.94965 0.92694 1.25755 1.01636 0.96252 0.94909 1.70065 1.35347 1.48149 1.02352 0.85651 0.79403 0.79236 0.77611 1.19481 1.20980 1.19721 1.22754 0.96236 0.88411 0.99257 1.87899 1.88196 1.20630 1.33782 1.22839 1.00561 0.80506 1.02263 0.93375 0.88434 0.93140 0.91009 0.91930 0.89761 0.92668 0.93921 0.90895 0.94293 0.93447 0.93026 0.92273 0.93468 0.94844 0.92667 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.10 8.83 -144.35 -1.27 -10.38 16 3 C 0.04 0.97 5.60 71.98 0.40 1.37 16 4 C 0.10 2.83 2.49 30.59 0.08 2.90 16 5 H 0.06 1.71 7.14 -2.39 -0.02 1.69 16 6 C 0.06 1.68 4.26 86.30 0.37 2.04 16 7 N -0.53 -20.15 5.03 -885.53 -4.45 -24.61 16 8 C 0.05 1.94 5.78 86.77 0.50 2.44 16 9 C -0.10 -4.70 5.94 31.98 0.19 -4.51 16 10 C 0.03 1.34 2.78 -10.36 -0.03 1.31 16 11 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 12 C -0.53 -29.77 8.47 25.60 0.22 -29.55 16 13 H 0.05 3.02 7.53 -2.91 -0.02 3.00 16 14 C 0.01 0.75 5.36 84.66 0.45 1.20 16 15 N -0.92 -53.85 12.48 21.45 0.27 -53.58 16 16 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.06 2.62 6.45 86.65 0.56 3.17 16 21 O -0.39 -11.91 10.21 -144.35 -1.47 -13.39 16 22 C 0.03 0.87 10.71 113.37 1.21 2.09 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 29 H 0.06 1.57 7.85 -2.39 -0.02 1.55 16 30 H 0.04 1.55 7.62 -2.39 -0.02 1.53 16 31 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.04 1.97 8.04 -2.39 -0.02 1.95 16 33 H 0.05 2.44 7.76 -2.38 -0.02 2.42 16 34 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.06 2.67 7.63 -2.39 -0.02 2.65 16 36 H 0.05 1.86 7.55 -2.39 -0.02 1.84 16 37 H 0.03 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.05 1.31 6.40 -2.39 -0.02 1.29 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.41 313.33 1.28 -62.13 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.99 Total: 9.63 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 5.20 Total: -15.90 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -4.19 Total: -78.19 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -2.75 Total: -23.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -63.41 1.28 -62.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694701636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.779 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds